Hcyd023386.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- lov
- Assembly
- GCA_036379175.1
- Location
- FAPN01051229.1:483-1592[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-19 2.1e-15 57.2 0.0 1 44 96 139 96 140 0.96
Sequence Information
- Coding Sequence
- CAATCCGAAACGTTCCTCGAATTATCTGATCGGAATCGAGTTAACGTGATCCGTCggaattataaaactataaagttACATGTGGCGACGTCGCCGGCGGTGCTGCGCTTTCTTTTTGACAGGCCCGCCCCTGCCCTAATAGTCGCGTGCTCGCGCCGAATTAGCGACAGCTCCCGCCGCGTCGCCGCTGCCGCCCGTTGCCGCTGCCGGCTCACTGCATCGCCGAAACACTGGCGGCCGAAGGGGCAGCACAGCGCGCCGCGCGGCGGCCCGCCCCGCTCCTGGACCAACGCAGAACTCACGGAAGCGCTACAACACGTGTGGAACAAGAAGATGACAACGAGCCAAGCATCAAGAATATTCGGCATCCCGTACAATTCACTTCTGATGTACGTGCGGGGTAAATACGGCAAGAGCTTAAAACTGGAGCAACTCCGAAAAGATTGTATCGGCGGTCCGTTGGaggtgttaaatttaaattcaggcaacaacaacaacaaccaCCCGCCGGGCAAGCACCACGACAAGGACGACCAGCACCAGAACGCGAGCCAGCGGCCGGCGAGCTCGGAACCGGACATCTCCTCCAACCCGATGTTCAACCCGTTCCAGCAGGGCTTCTACCCAGAGTTCCCACCCGGGTTCCCCATGCCGCTCAACATGCTGCACCTGCTGCCGCCGAGCGAGAAGGCGCGCGAGCTGTACCAGTCGATGCCGATGGCGCTCGACTCCCTGGCGGGTGTCACCAAGGAGGAGGACTGCAAGAGCGACCGGTCGAAGGAGAACTCCGCCGACGAGGAGGGCGAGGCGTACCGCGCGCCCGCGCACCCGCCGCACCAGCCGCACCCCCCCGACGCGCGCGCGCTGCTGCACCACAACGGGCAGGACTAG
- Protein Sequence
- QSETFLELSDRNRVNVIRRNYKTIKLHVATSPAVLRFLFDRPAPALIVACSRRISDSSRRVAAAARCRCRLTASPKHWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLEVLNLNSGNNNNNHPPGKHHDKDDQHQNASQRPASSEPDISSNPMFNPFQQGFYPEFPPGFPMPLNMLHLLPPSEKARELYQSMPMALDSLAGVTKEEDCKSDRSKENSADEEGEAYRAPAHPPHQPHPPDARALLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00777928; iTF_00779436; iTF_00796447;
- 90% Identity
- -
- 80% Identity
- -