Hcon019497.1
Basic Information
- Insect
- Heliconius congener
- Gene Symbol
- -
- Assembly
- GCA_018230605.1
- Location
- DWAO01026951.1:1567-3996[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.3 33 6.2 0.0 6 23 2 19 1 19 0.95 2 14 0.0055 0.61 11.7 0.3 1 23 25 47 25 47 0.92 3 14 0.98 1.1e+02 4.6 0.1 2 23 98 118 98 118 0.94 4 14 0.0018 0.2 13.2 0.0 1 23 124 147 124 147 0.95 5 14 2.8e-05 0.0031 18.9 6.8 1 23 153 175 153 175 0.96 6 14 5.2e-06 0.00057 21.2 0.5 1 23 181 203 181 203 0.98 7 14 0.0016 0.18 13.3 3.2 1 23 208 230 208 230 0.97 8 14 0.00047 0.052 15.0 0.3 6 23 240 257 239 257 0.99 9 14 0.29 32 6.3 0.9 3 23 292 312 292 312 0.93 10 14 6 6.7e+02 2.1 0.7 3 23 319 338 317 338 0.84 11 14 0.00085 0.094 14.2 1.3 2 23 541 563 541 563 0.96 12 14 0.0088 0.97 11.0 4.5 1 23 607 629 607 629 0.97 13 14 3.3e-06 0.00037 21.8 3.5 1 23 635 657 635 657 0.98 14 14 0.00062 0.069 14.6 1.5 1 23 662 685 662 685 0.97
Sequence Information
- Coding Sequence
- CTGTGCGGCGCCGCCTTCCGCCTGCGCGCCGCTCTGGCGCGCCACCGCCTCGCGCACTCGGGCGAGCGCCCGCACGCGTGCGCGCTGTGCCCGCGCGCCTTCCGCTCGCGCCACGAGCTGGGCGCGCACGCGCTGGCGCACTCGGGCGCCCGCCCGCACGCCACATTGACTGACGCGCAAAGTGCCGTCAGCCCGGAACCAGATTTTGCGTCGGACGAATCTAGAAACACACGAAAGGAGTATATCGAGAAGCCCCAAACTGTGCTGGTGAAAGACGGCAAGAAATACGGAGTGTGCGACGTTTGCCAGAAGGGGGTGATGCTGGCGTCGTGGCGGCGGCACGTGCGCTCGCACCGCAGCGTGAAGAGCTTCAGCTGCGAGGCGTGCGGGCTCGGCTTCAGCGACGGCGGGAACCTCGCGCGCCACGCCCGCGCGCTGCACGGGGACGACCGCCCGCACGCCTGTCACATTTGCCTCAAAAAGTTTTCCAGAAACAGCCACCTCCAGGACCACATAAAGTCGCACTTTGACAGCAGAGAGTTCGTCTGCGACCTGTGCGGTAAGGCGTCTAAATCCAGCTCGGCGTTGAGGATGCACAAGAGGACGCACGACGATTACAAGTTCCACTGCATGTACTGCGAGGCCAAGTTCAAGCGGCGCGCGCACCTCTCCGCGCACGTGTCGGTGCACACCGGCGAGAAGGCGCACGAGTGCGCGTGCGGGAAGACCTTCCGCCTCAGGAGCCAGCTCACGAGCCACGCGCGCGTCCACGAGAGGCGGGACTCGTTTGAAACGCCACAATTCAAGGCGTTCGTGcccttaatattattgaactgGACATACGTCGACAACCGTCAGAGCATCTGGCGCTGGTGTTACGTCTGTGACAAGAGGTTCCAGCGGGAGGTGTTCACCACGCACGTGTATACGATGCACGCGGAGTTCCAGCTGCACTGCGAGGTGTGCAACACTTTCGTAGAGAAGCAGGAGTACGTAGCGCACATGAGTCAGCACTCGTACGAGAGATCCATAGAAAAGGAAAAACATGCTAAGACAACGACTAAAAAGATTTTGGATGTCAATCTCGCTTGGTTTGTCAGACACGAGTTTTGCGACTGCAAGAACATTATGTGTACTTTCAATAAGGAaatgatgtataaaatatgtccCACCTATGTAGATTACGATTGCATTACGGAAACGATGGCTCATATACTTAATACTTCACTGGAGAAAGTACGGTGTGCGTATGAAGAACATTATATCGAACACGTCACACGAAGAAAGAAGTTAGTGTCGCTACCGACTGAACTCAACACCATAGGCACACCGAGACAAACGAAAATCGCaggtaaaatatctattaggAGCCTTTTGAATAATCTAAATAACCTAGTGGCAATTAAAAGGCAATCTGACTTACACCATTATCGAGTAGATTGCTTTAAAAGACGCTACGGACCTGATCAAAAGCAGCTGCCAGGACGTCCCGTTCGCGTCCATGACGCCAACATCCAAATAAAACTTGAACTGCAAGACGAAGTGAATAATAACGCGAACACGACAGAAAGCAATGATGACACAAATACTCCAGCAGTGAGACGTATTGAAAGGAATCGGAAGTGTCGTTTCTGTGGCAAGGTGTACACGTCGTCCGTAGATTACTTCGTCCACGTACGGCACGCGCACAAAGAGAGCCAAGGCCTGGTCGCTCCATCGCAACCACTTCCAGTCTTCAAATGCCGCGACTGCAACAAGCGCCTGAGGTGCAGGCAGAGCCTATTGATGCACTGTAGACGTCACACAGGAGTCAAGAATTACCACTGCAGCTCCTGTGATAAATCGTTCCGATGGCGTATACATTTAGAGAAGCACGAGAAGGTGCACGGTCCGAGGGTTAAATACGCCTGTCCAACTTGCCAAAAGGTGTTCACCGTAAAATGCGACTTGCGGAAACATCAACGCAAGCACGTAGTGAAGAACTTTGAATGCACAATTTGCAAGGAGAAATTCACTGGAGACAGATATTTGAAGGTTCACATGACGAGGAAACATAAGAACGGAAACGAATCAGGAGGAAAAATTGTGAAGAAAGTTAAGGGTATCAAATCGACTACCGATGTAGGCACAAGGAAGCCTAACGTGCAGGCCAGGAGAGTCTCCACACGGAACAAGTAA
- Protein Sequence
- LCGAAFRLRAALARHRLAHSGERPHACALCPRAFRSRHELGAHALAHSGARPHATLTDAQSAVSPEPDFASDESRNTRKEYIEKPQTVLVKDGKKYGVCDVCQKGVMLASWRRHVRSHRSVKSFSCEACGLGFSDGGNLARHARALHGDDRPHACHICLKKFSRNSHLQDHIKSHFDSREFVCDLCGKASKSSSALRMHKRTHDDYKFHCMYCEAKFKRRAHLSAHVSVHTGEKAHECACGKTFRLRSQLTSHARVHERRDSFETPQFKAFVPLILLNWTYVDNRQSIWRWCYVCDKRFQREVFTTHVYTMHAEFQLHCEVCNTFVEKQEYVAHMSQHSYERSIEKEKHAKTTTKKILDVNLAWFVRHEFCDCKNIMCTFNKEMMYKICPTYVDYDCITETMAHILNTSLEKVRCAYEEHYIEHVTRRKKLVSLPTELNTIGTPRQTKIAGKISIRSLLNNLNNLVAIKRQSDLHHYRVDCFKRRYGPDQKQLPGRPVRVHDANIQIKLELQDEVNNNANTTESNDDTNTPAVRRIERNRKCRFCGKVYTSSVDYFVHVRHAHKESQGLVAPSQPLPVFKCRDCNKRLRCRQSLLMHCRRHTGVKNYHCSSCDKSFRWRIHLEKHEKVHGPRVKYACPTCQKVFTVKCDLRKHQRKHVVKNFECTICKEKFTGDRYLKVHMTRKHKNGNESGGKIVKKVKGIKSTTDVGTRKPNVQARRVSTRNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00778215;
- 90% Identity
- iTF_00778215;
- 80% Identity
- -