Basic Information

Insect: Heliconius congener
Gene Symbol: -
Assembly: GCA_018230605.1
Location: DWAO01006169.1:1-11149[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.6e-05 0.0051 18.2 2.2 1 23 229 251 229 251 0.97

2 16 0.0034 0.37 12.3 0.7 1 20 257 276 257 279 0.94

3 16 1.3e-05 0.0014 20.0 5.4 1 23 298 320 298 320 0.98

4 16 0.00011 0.012 17.0 4.7 1 23 326 348 326 348 0.99

5 16 2e-05 0.0023 19.3 5.3 1 23 354 376 354 376 0.97

6 16 6.5e-06 0.00073 20.9 7.3 1 23 382 404 382 404 0.97

7 16 4.3e-07 4.8e-05 24.6 2.9 1 23 410 432 410 432 0.97

8 16 5.8e-05 0.0065 17.9 6.7 1 23 438 460 438 460 0.97

9 16 0.00013 0.015 16.7 5.6 1 23 466 488 466 488 0.97

10 16 2.8e-07 3.1e-05 25.2 1.9 1 23 494 516 494 516 0.98

11 16 2.7e-05 0.003 18.9 8.1 1 23 522 544 522 544 0.98

12 16 4.6e-06 0.00051 21.4 6.6 1 23 550 572 550 572 0.98

13 16 3.9e-06 0.00043 21.6 5.8 1 23 578 600 578 600 0.98

14 16 9e-06 0.001 20.4 6.1 1 23 606 628 606 628 0.97

15 16 1.3e-05 0.0014 20.0 7.1 1 23 634 656 634 656 0.97

16 16 3.6e-05 0.004 18.5 3.8 1 19 662 680 662 681 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.6e-05	0.0051	18.2	2.2	1	23	229	251	229	251	0.97
2	16	0.0034	0.37	12.3	0.7	1	20	257	276	257	279	0.94
3	16	1.3e-05	0.0014	20.0	5.4	1	23	298	320	298	320	0.98
4	16	0.00011	0.012	17.0	4.7	1	23	326	348	326	348	0.99
5	16	2e-05	0.0023	19.3	5.3	1	23	354	376	354	376	0.97
6	16	6.5e-06	0.00073	20.9	7.3	1	23	382	404	382	404	0.97
7	16	4.3e-07	4.8e-05	24.6	2.9	1	23	410	432	410	432	0.97
8	16	5.8e-05	0.0065	17.9	6.7	1	23	438	460	438	460	0.97
9	16	0.00013	0.015	16.7	5.6	1	23	466	488	466	488	0.97
10	16	2.8e-07	3.1e-05	25.2	1.9	1	23	494	516	494	516	0.98
11	16	2.7e-05	0.003	18.9	8.1	1	23	522	544	522	544	0.98
12	16	4.6e-06	0.00051	21.4	6.6	1	23	550	572	550	572	0.98
13	16	3.9e-06	0.00043	21.6	5.8	1	23	578	600	578	600	0.98
14	16	9e-06	0.001	20.4	6.1	1	23	606	628	606	628	0.97
15	16	1.3e-05	0.0014	20.0	7.1	1	23	634	656	634	656	0.97
16	16	3.6e-05	0.004	18.5	3.8	1	19	662	680	662	681	0.96

Sequence Information

Coding Sequence: GGTCATCATTCACAGCAGCATATCATGCAGCAGCAGTTGATGGCGGCCGCACGTCCCGAACACGCAAACCAACAGATTCAACTGACAGTAAGCGAGGATGGCATAGTGACGGTGGTGGAGcccggcggcggcggcgggaaGCTCGTGGAGAAGGAGGAGCTTCATGAAACAATCAAAATGCCTACAGACCACACCCTCACTGTGCACCAGTTGCAACAGATTGTTGGACATCACCAgGTGATCGACAGCGTGGTGCGCATCGAGCAGGCGACGGGCGAGCCCGCCAACATACTGGTGACGCAGAACCCGGACGGCACCACCTCCATAGAGACCAGCGCCGCCGACCCGCTGCTCGTGAAAGATGAGAAAAATGTCGCTAAAATTGAATCCGCCCAATTTGCTATACCGACggaaattaaagatattaaaggAATCGATTTAAAGAGTGTTGGAGCTATGGGCATGGAGGGAGCGGTGGTCAAGATTTCAGCGGCAACTGAGCACGACCTCCAACATGCCATGTATAAAGTGAATGTGGAAGATCTCTCGCAACTATTGGCCTACCACGAAGTATTTGGAAaacttaataatgaaaatccaCAACAACCTAAGGTAATAACTGAAGTAGAAGCGGAGGCCGGCACCAGCGCCGCCATGTCGGAGGCGGAGTCGTCTCCCGGACATCACTCTTGCGACATATGCGGGAAAATATTCCAATTTCGATACCAACTTATCGtacatagacgCTATCACGGAGAAAGCAAACCGTTTACGTGTCAAGTTTGTGGGTCCGCATTTGCTAATCCGGTGGAACTGTCAAAACACGGCAAATGTCACTTAGCCGGTGATCCCGCTGAGCGTCAAGCAAAGAGACTGGCGCAAGATAAGCCCTACGCATGCTCCACTTGCCATAAGACATTCTCACGTAAGGAGCACCTGGACAACCATGTACGGAGTCACACTGGAGAAACTCCTTACAGGTGTCAATTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCACCGCTGCGAGATATGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACGGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGTGAACCATATGAGGTCGCACACAAACGACACCCCGTTCAGGTGCGATCTGTGCGGCAAGTCCTTCACCAGGAAGGAGCATTTCACCAATCATATATTGTGGCACACCGGTGAAACTCCACATCGATGCGACTTCTGCTCTAAAACCTTTACACGTAAAGAGCACCTGCTAAATCATGTGCGTCAGCATACAGGGGAATCGCCGCATCGCTGCAATTTCTGTGCGAAGTCCTTCACAAGACGAGAACATTTGGTCAATCATGTGCGACAACACACCGGTGAAACGCCTTTTCAGTGCGGATACTGTCCTAAAGCTTTTACTAGGAAAGATcatttagTGAATCATGTTCGTCAACACACGGGAGAGTCCCCACATAAATGTACATTCTGTACGAAATCATTTACGCGCAAAGAGCATTTAACAAATCATGTGCGACAACACACGGGGGAATCCCCTCATCGATGTACATACTGCGCCAAGTCTTTCACTAGAAAGGAACATCTTACAAATCATATAAGACAGCATACGGGCGAGACTCCCCACAAGTGCACGTACTGCCCGCGCGAGTTCTCGCGCAAGGACCACCTGCAGCAGCACGTGCGCCAGCACACGGGCGACGCGCCGCACACCTGCAGCTACTGCAACAAGAGCTTCACCAGGAAAGAGCACCTCGTTACGCACGCCAGACAACATACTGGCGAAACTCCATTCAAATGCACGTACTGCTCGAAGTCGTTCTCGCGTAAGGAGCACCTCACGAACCACGTGCACCTTCACACTGGTGAAACACCGCACAAGTGTCCGTTCTGTACTAAGACCTTCTCTAGGAAGGAACATTTAACTAACCATGTCag
Protein Sequence: GHHSQQHIMQQQLMAAARPEHANQQIQLTVSEDGIVTVVEPGGGGGKLVEKEELHETIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLLVKDEKNVAKIESAQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISAATEHDLQHAMYKVNVEDLSQLLAYHEVFGKLNNENPQQPKVITEVEAEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPREFSRKDHLQQHVRQHTGDAPHTCSYCNKSFTRKEHLVTHARQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00776162;
90% Identity: iTF_00776162;
80% Identity: iTF_00776162;