Hcha002928.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius charithonia
Gene Symbol
Sall1
Assembly
GCA_030704555.1
Location
CM060811.1:1582761-1591819[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 7.4 5.7e+02 1.8 0.2 2 23 6 27 5 27 0.93
2 13 0.014 1.1 10.4 0.6 1 23 1003 1026 1003 1026 0.91
3 13 5.3e-05 0.0041 18.0 1.7 2 23 1129 1150 1128 1150 0.96
4 13 5.4e-05 0.0042 18.0 3.7 1 23 1156 1178 1156 1178 0.99
5 13 0.016 1.2 10.3 2.8 2 23 1185 1206 1184 1207 0.95
6 13 0.54 42 5.4 1.9 5 23 1220 1238 1218 1238 0.97
7 13 0.019 1.5 10.0 1.1 3 23 1245 1266 1244 1266 0.96
8 13 0.19 15 6.8 0.1 2 23 1281 1301 1280 1301 0.95
9 13 0.0037 0.29 12.2 0.8 1 20 1307 1326 1307 1329 0.88
10 13 0.0047 0.36 11.9 1.4 1 23 1337 1359 1337 1359 0.98
11 13 0.0055 0.43 11.7 7.2 1 23 1365 1387 1365 1387 0.98
12 13 6.4e-06 0.0005 20.9 1.3 1 23 1393 1417 1393 1417 0.98
13 13 0.001 0.078 14.0 5.1 1 23 1423 1445 1423 1446 0.95

Sequence Information

Coding Sequence
atgGATCAAAGAGTTCAGTGCCCTGTGTGTACACTGTATCTACACAGTGGGATGTCATTAGCATCACATTTGGATACACATCCAAAAGATCAAGTAATAAAAGCATTATGTAGCCTATCAGCAAAAAATTCTAACTTTGGAAGCAGAAGTACCACTCCATTGAACTCAGAAAGGTCATATAGAAGCAGATCACGCACTCCAGCTACAGATGACAGTGGCCGCTGGGGCAACTCCCATCGTAATAGTGATACTGAAAGGTATTGGAGAAGAACACCAAGCCGTACGAAATCAACCCCAATTTCAAACAATTCAAGAAATCCAACTCCAGATAttagaattggaaatatttcatttgaaaatcATAACTCTAATAATAATTCCAGTCAGTGTTCTGATTCATGTACAGTAAAATCTGATAAAACACAGAAGACATATGGCTCTAATGGTCAGCTGTCAGCTTCTGAATTTGATCAACAATATCCTTACTATGGAGATCAACAAGAAgatacagaaataaaattttcaagaagCTCAGAATATAGTGCACAAATAGAGAATCCAAGTAATTTGTTTGCATATAGTATGCCTGTCATGGGGCCAGGAGTAAAGCTTCCACCAGGTATGATGCCAACAGTGCCTAGACGTAGTGGGgactttacaaaaattttacctaaacaaggaaatttattaatgaaagcCAATATGAGCGGGATGCAATATATGTCCCCTGGAGGGAAACCAATGCATGTAATGATGCCTACACCACCAAcatttatgcaaaaaaatatgcaaaataatatgattatggCTGGAAGTATGCCAGGGTCACCAATGCTAGACCCAAAGTCAATGCCTTCATCAATGAATCCTCTTAGTAGCCAATTTAATCCACTGAATGCTGGATTTACACCTGGAACTACTGTAGTTACACAAAACtctcatattatatatagggaGATGGTGCACAATATTGATGGTAAACCCTTTCCTTCGAATATGCCACCTGTGCTAGGAGGCCCTGAAACTGTTACAAATGTGGCTCAAAGTAGTTCTATGTATCAAAATGTAATGGTTGTTGACCAGTATGGTAACACATCATGCATGTATTCGACACCACAGCATCTAATGCCAAAACCATGTAATCCTATATTTAATGAAAGTATACCATCATATATGCAAAGTATGACTAATAAAACTTCCCAGCGTATGGTCAATGACACTAATAAAACATTGATTATAGAAGTCAGTCCTATGACAGACAGTTCATCTATTCAAGAAGCTCAAATACCTCGGGGAccacaacaaaaaaatcatccAATTAAGAGAAaacttgaaaaagaaaaatgtgaGTTGAAAACTGAATCACCAGGGTCTAGTAAAGGATTAAAAATTCTTAGTAATATTAAAGTGGAAGTTCCTGTCCAACATCataaaaatatgcttaataCTGTTATGGATTTAACGGGTTCAGCTGATTCTGATTACCCCGATCGTTCTGTAACGCCAGAAAAAATATTGCCTGATTTAGATGAAGATCCCACAAGTATAATGGATGAATGTACCCAACGTTCATGTATCAGTGTAGATAGTATAACATCAAATGCATTTACTGGAATAAAAAGTTCATCCAATCATTCCTTTAAAGATTCTTCGTCTAAATCAAACACTGTAGAAAATAAACTAGATACAGAATTTTCAGACAGTTGTCCAGTTCCTGATCTTATATGCAATGAAAAACCTTCTATATCTCCTTGCAGTGAATTATCAGAACAGGGTGATAACTCAACTGAACACATACTACCATCACCCAAACCCGAAAGTAGTCAACCATACCAAAGTTCTTTATGTAATAGTAATGAAACTGGCAAAAAATCTGGTAAAGCACAAAAGAATAATGTTTTAAGGCTGAATaatattttcgtaaaaaaacataaaaaaattttgcaaataaGGAATTCTAAACTGGATCATCCTTCAAAAGTAGCTCTAGCAGAACAAGAGCCAAgagcatcatcatcatcatcatctcgTAAGTCACCAGAAAATTTTTCCATGACAAAAATCCGTCAACCAGATTTAACGGAAGTTAAACCTACTCTACAGACTGTATCCATTGAAAAGATCAAAGATAACGATGTTGATGATCGTAACGATTTCGACGCTAACACAGAGGAACAGTCGATGGATATCGAACCAGTTACTCCGTCCAATGTCAACCATTCCAATGATTTTTCAAGCAATGCATATAATGGCTTGGTGCAAATTAAAGAGGAAGTAAATTCTAGTAATGAATTTAGCAATGAAGCCGTGAGGTCTCCTGCCGATATTGCACCTATGGAGACACTTAGGCCCATTAATGTGATCAATTATAGCAATATGGCGGATTTTGATGACGATTCCAATCATAGGGAGCTCCTAGAATTAGAGGCAACAtcaaaaaataagcaatttgtGTCTATGATGAACGAAAATTATTTTGGTGACAATATTTATGCAGATTATTTTACACCTGACAGAGGAGAAACTTTTGAAGCTCAAAAAGAATCAAATTTTACTAAAGATGTTGCTAAAGACGCGATGTACGTTTGGGGAGAGCCTTCACAAAAGGAGAGTGAATTCGTTTTGCCCAATTTCATCCACGAGAGTTATAAAATAGCGGAGAGTGGTATGGATTATTCTGACATTGGCGCGGGAGAAGAGCAAACGGATAGGGGCGAAAAAGACAGCAAAGTAGATGTTTTAAGTGAAAGTAGGAGTGAGGGTGAACCACCTCTAAACATTTGTGCAGATGAAAGAATGCCGCCTAGAGGTGAACTGAGCGGGCAGGAGAGCAATGGAGATATGGAGTCACCTTGGAACGGGatgtattcGGGAGTGCCGCCCGCGGCAGAAGCTTACGATCTAATGGCGCGGGAAAGTTGGGTGTCAGACGGCTCTGACGTTGAAGTGACcgagaaaattgaaaatatagAGGAAGAAATCCCCTTTCCAAAGGCGCAACGTATGCACAATTGTGCACAATGCGGTAACAAGTTCCCCACCCTTAAGGAACTGCGAGCCCATAAAGCAAATGTTCACGTGTTACCTACTTGCTCTAACTCGAAAACATCATACAGCCGCCTCATGACGGCGAGAGCGATAAAGAAGGAAGAGAAACCCGATGAGCATGTTCTAGCAgGCAATCTCTTGTCAATGGACTCAAAGGAAACAATAGCGTCAGCCATGCTCCAAGTATACCACCAGCAATTCGAAGCTAAACCGTCCCTCGACGGCATATTAAAGCAAGAAAGTAAGAAACGCAGGAAAGATTTCATATGTCCGACGTGTAAAGTGGACCAATTGACAGACGCGGCTTTTCACGCCCATCTAAAAATACATCCGCTGGAGTGCTTGACTTGTGGAAAGTGTTTCTTCAGACGAGCGAACCTGGCGTTACATGTGAAAACACATTTAGGGATAAAGAACTATAAATGCGACATATGCGAGAAGCGTTTCATAACGCGCCAGAAGCTGACGGAGCACCACAACACGCACACCGGCCGCGCGCCCGTCAAGTGCACGCTGTGCGACGACACCTTCAGGCGGTACTCCAACATGGTGCAACATAGagACCGTCACCATTTCAAAAAGAAGACAAAAGTCCGCGACTTCGTCTGCCATTGCGGTGCTGTGTTTCACTCTAGGGCCAAGCTCCTCTGGCATAAGGAAACCCACGAGGACAAGCCCAAAGCGTGTTTGTATTGTAGCGACAAGTTTGTCCACGCGGCGTCACTTACAAGACATGTGCGGAGGTCTCACAATGAACATTTTGCTGATGCACAAAAGGGAAGGGAAAACGTGCCATGTCCTGTGTGTAAACAGTTATACCTCCGAGCGAATCTACGCGCTCACCTCCTAACGCACAGCGGCAAACGTCCCTACAACTGCATCATATGCAACAAGGGCTTCACAACCAAATGGAACCTCAAACTGCACCGATGGACTCACCTCAGTCGTTCAGCGAAGCCCTATAAATGCACCCTGTGCAAAGGTGCATTTATACGACATACAGAATATATATCCCACATGAATGCCCACAAGTCGGTGCGCCCCTACACGTGCAACTACTGCGGCTGTCAGTTCATAAGGAAGTACAACTGTCAACGTCACGTCAGAGAACACGAAATGGCGAAGAAGTATGTGTGCAAAGTGCCGGAATGCGGTAAATCGTTCCATAGGAGTTATTATTTGTCCGAACATATGAAAGTGCATAGTGGTGCTAGACCGTTTTCCTGTAACATTTGCGGGAAAACATCCAGCAATAAGTCCAATCATAATAAACACGTCAAAATACATCACGCCCGAGAACCTGTTGCCACCGAAGCGTAA
Protein Sequence
MDQRVQCPVCTLYLHSGMSLASHLDTHPKDQVIKALCSLSAKNSNFGSRSTTPLNSERSYRSRSRTPATDDSGRWGNSHRNSDTERYWRRTPSRTKSTPISNNSRNPTPDIRIGNISFENHNSNNNSSQCSDSCTVKSDKTQKTYGSNGQLSASEFDQQYPYYGDQQEDTEIKFSRSSEYSAQIENPSNLFAYSMPVMGPGVKLPPGMMPTVPRRSGDFTKILPKQGNLLMKANMSGMQYMSPGGKPMHVMMPTPPTFMQKNMQNNMIMAGSMPGSPMLDPKSMPSSMNPLSSQFNPLNAGFTPGTTVVTQNSHIIYREMVHNIDGKPFPSNMPPVLGGPETVTNVAQSSSMYQNVMVVDQYGNTSCMYSTPQHLMPKPCNPIFNESIPSYMQSMTNKTSQRMVNDTNKTLIIEVSPMTDSSSIQEAQIPRGPQQKNHPIKRKLEKEKCELKTESPGSSKGLKILSNIKVEVPVQHHKNMLNTVMDLTGSADSDYPDRSVTPEKILPDLDEDPTSIMDECTQRSCISVDSITSNAFTGIKSSSNHSFKDSSSKSNTVENKLDTEFSDSCPVPDLICNEKPSISPCSELSEQGDNSTEHILPSPKPESSQPYQSSLCNSNETGKKSGKAQKNNVLRLNNIFVKKHKKILQIRNSKLDHPSKVALAEQEPRASSSSSSRKSPENFSMTKIRQPDLTEVKPTLQTVSIEKIKDNDVDDRNDFDANTEEQSMDIEPVTPSNVNHSNDFSSNAYNGLVQIKEEVNSSNEFSNEAVRSPADIAPMETLRPINVINYSNMADFDDDSNHRELLELEATSKNKQFVSMMNENYFGDNIYADYFTPDRGETFEAQKESNFTKDVAKDAMYVWGEPSQKESEFVLPNFIHESYKIAESGMDYSDIGAGEEQTDRGEKDSKVDVLSESRSEGEPPLNICADERMPPRGELSGQESNGDMESPWNGMYSGVPPAAEAYDLMARESWVSDGSDVEVTEKIENIEEEIPFPKAQRMHNCAQCGNKFPTLKELRAHKANVHVLPTCSNSKTSYSRLMTARAIKKEEKPDEHVLAGNLLSMDSKETIASAMLQVYHQQFEAKPSLDGILKQESKKRRKDFICPTCKVDQLTDAAFHAHLKIHPLECLTCGKCFFRRANLALHVKTHLGIKNYKCDICEKRFITRQKLTEHHNTHTGRAPVKCTLCDDTFRRYSNMVQHRDRHHFKKKTKVRDFVCHCGAVFHSRAKLLWHKETHEDKPKACLYCSDKFVHAASLTRHVRRSHNEHFADAQKGRENVPCPVCKQLYLRANLRAHLLTHSGKRPYNCIICNKGFTTKWNLKLHRWTHLSRSAKPYKCTLCKGAFIRHTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHAREPVATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00782936;
90% Identity
iTF_01182133;
80% Identity
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