Basic Information

Insect: Heliconius charithonia
Gene Symbol: -
Assembly: GCA_030704555.1
Location: CM060810.1:7340856-7348579[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0023 0.18 12.9 1.8 2 23 72 93 71 93 0.96

2 12 0.012 0.93 10.6 1.0 3 23 101 122 99 122 0.94

3 12 0.011 0.84 10.8 0.3 2 23 130 152 129 152 0.95

4 12 5.2e-05 0.004 18.0 3.0 1 23 158 180 158 180 0.96

5 12 0.00063 0.048 14.7 6.0 1 23 186 208 186 208 0.95

6 12 0.00035 0.027 15.5 0.8 1 21 214 234 214 235 0.96

7 12 0.066 5.1 8.3 2.2 3 19 254 270 253 275 0.92

8 12 1.8e-06 0.00014 22.7 1.4 1 23 561 583 561 583 0.98

9 12 0.00032 0.024 15.6 0.6 1 23 590 612 590 612 0.95

10 12 5 3.8e+02 2.4 0.1 1 23 621 644 621 644 0.88

11 12 0.4 31 5.8 4.2 2 23 651 674 650 674 0.93

12 12 0.0038 0.3 12.2 1.6 1 21 680 700 680 701 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0023	0.18	12.9	1.8	2	23	72	93	71	93	0.96
2	12	0.012	0.93	10.6	1.0	3	23	101	122	99	122	0.94
3	12	0.011	0.84	10.8	0.3	2	23	130	152	129	152	0.95
4	12	5.2e-05	0.004	18.0	3.0	1	23	158	180	158	180	0.96
5	12	0.00063	0.048	14.7	6.0	1	23	186	208	186	208	0.95
6	12	0.00035	0.027	15.5	0.8	1	21	214	234	214	235	0.96
7	12	0.066	5.1	8.3	2.2	3	19	254	270	253	275	0.92
8	12	1.8e-06	0.00014	22.7	1.4	1	23	561	583	561	583	0.98
9	12	0.00032	0.024	15.6	0.6	1	23	590	612	590	612	0.95
10	12	5	3.8e+02	2.4	0.1	1	23	621	644	621	644	0.88
11	12	0.4	31	5.8	4.2	2	23	651	674	650	674	0.93
12	12	0.0038	0.3	12.2	1.6	1	21	680	700	680	701	0.97

Sequence Information

Coding Sequence: ATGGAGTCCAATATGTCTTTCTTCAGTTTACCTTTTGTTGACTCGGAGACTTCAGATCTAGTGTTCAATAAGAAAGTCGATGAATGTGATTATGACTTTCAAAGTGAATTACCTTCGCAAAGTGCTTTACTTGGTACGGATGACGAACTGGCCCAATTGCTGACCGCCGATGGACCTTTAGAAGAACCAGATTTAAATGGACCGGCCACTTTACATTGCGAAATATGTCAAAAAAGATTTGATAATGCAAAGAAATATTATGGACATTTGAGAGTACATTCTAAAGATAATCTTTGGATTTGTGaGAAATGTCCAAATCAAAAATTCTCTACAAAGCAACAATTAATGAAGCATAGTTTAACTCACAAGCCACTGGCAAGAGTATGGAAATGTCCTCAATGTTCCATGGCATTTGAGTCTTTGTGGCGTCTTCAACAGCATGTTTTTACTAAACATTTTGATTATAGGCCTCATAAATGTGATCAATGTGAAAAATCATTCCAGAAACCGTCTGATCTTAAAAAGCACAAAGATATCCATAAcgaTGTTAAAAAACATATCTGTCCATGTTGTGAAAGAGAGTTTGGACATAAATCCAATTTGAAGAGACACATGTTGACACACACCAATGAGAAACCCTTCAGTTGTACTGGATGCAATAATAGATTTACAcagATAGCATCACTAAAACGACATCAGAAAAACTGCGTTCTGTTTTCCAATAGCAATGAAAATGAGGATAAAACGAGAAAAAACCATTGTAGGGTTTGTGGGGagacatttcaatataaaagtGCATTGATAGAACATTGTGTAAGGCAACATAGTAGTGGAAATAATGGTAATGAAGACAAGTTACAAATAAGCCAAGCCAACATAGATACAAATAGAACTGAAGACAACATAGTGGATGACATACTGTCAGCCGAGGACGACTACATGACGATGTCCGCACAAACCTTACAAAATTATAACCAACAAACGGTCCCAGATCAAAACACTTACGACAATCTAATGCAAATAGAATTCCTCAAAGAGATGAACCAACTGCACATTTTAGATGAAGATGAAGAGGATTTGCTATATAACGATATTGATTTTGATTCATTTAAcactaacaataatataaatagcgatatagattatataaatgacaGACACGGTGTTCTATTTGATGATATGTCCAGCAAAGTGGATCAAGATCTGATGAGTGCGCTGTATCATGTTAAAGCTGATTTACCTGATGATATATTGAATGTGGAGACACCGAAACAAGTAGAAACTCAAAATTCATCACCTCAATGTACTGGTACTGTTCCGGTGAACGAATGTGCAACTATATTTGAAAGTGATGTGGATTTAGAAGCTAGTACCAACTTGGCGGCCAATTTGAATCAGCTTATCGGTGAAAATACTGTACAATATATTTCAACTGAAGACGATGATATGTTTATCATACAATTAAATAGTGAAATTGATGCAGAACAACTGACAGACATGTTGAATATTGGTGTAGAAGTTGTAAATACAGATAATGATAAAACTAAAGTTAATAATGAtactattaataatgaaatgacAAATGATAACATGcctattgttattaaaatagaaaatgtgaAAGAAACAGGGCAATTTGAAAGTtctaagctgaaaaaaaaatgcaagaaaCAAGTGCTTTATGTGTGCTCTActtgtgataaaatatttaagaagaaaGATAATTATAGATCTCATATcgCGACGCACAGCGCGGCGCTGCGCCGGCACGCGTGCGGCACGTGCGGCGCGCGCTTCAGCTACCGCTCCACGCTGGTGCGCCACGCCGCGCGCCACcgcccgcgcgcgccgccccGCGCGCACCGCTGCGCGCCCTGCGCGCGCCCCTACGCCGCCGCGTGGATGTTAAAGAATCACATAGAACGCGACCACGAGCGGTTGACGCCGCACGCGTGCGACGCGCAGGGGTGCACCAGGAAGTTCTACAAGAAGTGCGACCTGGACGTGCATAAGAGGTACCACACGGGTGAGCGACCCTATGTCTGTAACGTGTGTCAGTTTGCCTTCCTCCACGTGTCACACTTGCGGCGGCACCAGCGACTCGTGGACTGCAAACGAAGgctTGAAAGACGTCAGAGAGTGGAACAACAAACTATTGagaactaa
Protein Sequence: MESNMSFFSLPFVDSETSDLVFNKKVDECDYDFQSELPSQSALLGTDDELAQLLTADGPLEEPDLNGPATLHCEICQKRFDNAKKYYGHLRVHSKDNLWICEKCPNQKFSTKQQLMKHSLTHKPLARVWKCPQCSMAFESLWRLQQHVFTKHFDYRPHKCDQCEKSFQKPSDLKKHKDIHNDVKKHICPCCEREFGHKSNLKRHMLTHTNEKPFSCTGCNNRFTQIASLKRHQKNCVLFSNSNENEDKTRKNHCRVCGETFQYKSALIEHCVRQHSSGNNGNEDKLQISQANIDTNRTEDNIVDDILSAEDDYMTMSAQTLQNYNQQTVPDQNTYDNLMQIEFLKEMNQLHILDEDEEDLLYNDIDFDSFNTNNNINSDIDYINDRHGVLFDDMSSKVDQDLMSALYHVKADLPDDILNVETPKQVETQNSSPQCTGTVPVNECATIFESDVDLEASTNLAANLNQLIGENTVQYISTEDDDMFIIQLNSEIDAEQLTDMLNIGVEVVNTDNDKTKVNNDTINNEMTNDNMPIVIKIENVKETGQFESSKLKKKCKKQVLYVCSTCDKIFKKKDNYRSHIATHSAALRRHACGTCGARFSYRSTLVRHAARHRPRAPPRAHRCAPCARPYAAAWMLKNHIERDHERLTPHACDAQGCTRKFYKKCDLDVHKRYHTGERPYVCNVCQFAFLHVSHLRRHQRLVDCKRRLERRQRVEQQTIEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00782076;
90% Identity: iTF_00778987;
80% Identity: -