Basic Information

Insect: Heliconius charithonia
Gene Symbol: -
Assembly: GCA_030704555.1
Location: CM060816.1:445887-447988[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.4 5.7e+02 1.8 0.2 1 23 39 64 39 64 0.77

2 15 0.13 9.7 7.4 1.9 1 23 108 130 108 130 0.96

3 15 0.41 32 5.8 0.2 6 23 142 160 142 160 0.97

4 15 0.036 2.8 9.1 0.2 3 23 171 192 170 192 0.96

5 15 3.1e-07 2.4e-05 25.1 0.3 2 23 217 238 217 238 0.97

6 15 5.9e-05 0.0046 17.9 2.4 1 23 245 268 245 268 0.96

7 15 0.0033 0.25 12.4 0.0 1 23 274 296 274 296 0.97

8 15 9.8e-06 0.00075 20.3 2.2 1 23 302 324 302 324 0.97

9 15 0.56 43 5.4 0.8 1 23 462 484 462 484 0.93

10 15 0.00055 0.042 14.8 0.6 2 23 491 513 490 513 0.90

11 15 0.0023 0.18 12.9 0.2 3 23 520 540 519 540 0.97

12 15 0.00059 0.046 14.7 0.1 1 23 546 568 546 568 0.96

13 15 0.007 0.54 11.4 0.1 1 23 574 596 574 596 0.94

14 15 0.005 0.39 11.8 0.3 1 23 602 624 602 624 0.92

15 15 0.32 25 6.1 1.4 1 19 630 648 630 653 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.4	5.7e+02	1.8	0.2	1	23	39	64	39	64	0.77
2	15	0.13	9.7	7.4	1.9	1	23	108	130	108	130	0.96
3	15	0.41	32	5.8	0.2	6	23	142	160	142	160	0.97
4	15	0.036	2.8	9.1	0.2	3	23	171	192	170	192	0.96
5	15	3.1e-07	2.4e-05	25.1	0.3	2	23	217	238	217	238	0.97
6	15	5.9e-05	0.0046	17.9	2.4	1	23	245	268	245	268	0.96
7	15	0.0033	0.25	12.4	0.0	1	23	274	296	274	296	0.97
8	15	9.8e-06	0.00075	20.3	2.2	1	23	302	324	302	324	0.97
9	15	0.56	43	5.4	0.8	1	23	462	484	462	484	0.93
10	15	0.00055	0.042	14.8	0.6	2	23	491	513	490	513	0.90
11	15	0.0023	0.18	12.9	0.2	3	23	520	540	519	540	0.97
12	15	0.00059	0.046	14.7	0.1	1	23	546	568	546	568	0.96
13	15	0.007	0.54	11.4	0.1	1	23	574	596	574	596	0.94
14	15	0.005	0.39	11.8	0.3	1	23	602	624	602	624	0.92
15	15	0.32	25	6.1	1.4	1	19	630	648	630	653	0.89

Sequence Information

Coding Sequence: ATGTACAATTTCAGGTCGTCAGATCCACATTCACTTTCCGCGATTATCAAAAGCATGTTGACTGACGACTATTTTAAAGTGTTCGACATTGATACGGAAGGCTCAAATGTAGAATATGTCTGCCAAATATGCCCGGGAAACCCGACTTCGAGGACTATCGACAATTTGAGCTACCATTTAACTTATTCACATCctacttatataattaacaagCAATCcgttgaaaaatttataaaaaaaaatattactttcgaAGAAATATTAGATGATCACTTAATTGACGAAGATCCAGAACTGAGGACAATTATACAATTGCCAAATTACTTTTGTCCGTTTTGTGATAGTGCTTTCTCGTCGCCAACTCGTCTCGTGTGTCATTTGAATAAGCATATAGAAGTGAACTTAGATAACGGAGTGACATGTTGTGACAATCGTTACCCCAATAAGAAGTCCTTCGTGGCCCACTTGCAAACATCGCACATAGATAAAAATGTACATGGCaaagaaatatgtaaaagttGCGGTTTTGCTACAAATTACATGGATGATTTACAATCACATATAAGTAAAGCTCACCCGGAAAGTAAAAAtgataatgaaaagaaaaagaaagatcCAAGTCCTAAAAATCAGAAATTCATCCCAGCAGTCTGCCCTGAATGTGATAAAGTTTTTTCTAACAAATATAACATGCTGGTTCATATGAAGAATCATAGTAAATCGTCCGTTAAATTTGCATGTGATAAATGTAACAGAACTTACACAAGTCGAGGAAACTTGTCTCATCACAAGAAAATAGCACACGAGGGTCTACTTCCGTTTCCGTGTCCTCTTTGCGGGGAAGCGTTTCCGTCCAGAATGGCGCGCGACGTGCACACGCGCATACACACCGGCAGCAAGCCGTTCTGTTGCCAAATCTGCGATAAGAGTTTCCGAGCCAAAAATAGCCTGGAGAGACACATAGACATGCACTTAGACATCAGAAAATGGTCACCCTACTCCGACCAAGATGAAATTTACGGAAATGCCATCGAGCATATAGTCGTCGGAACGGCTGCCGAGTTTTATACTGAACCTAGTTCGTCCGACGACGAACCTCTTGCCACTTTGGCAAACAGGAATAAAACAGAGctatataagaaattttatatcgCCTTAAAAGAATTCCGAGACCATTTCGCGAGCGATCATCACGGACAACTGAGCCATTCGGACTTTTCCGACTCCACCGATTCGGAGTCCGACGGCGGAGACGACAACGCGCAGGAGACGGACGCTAAGTACTACGACGACCTCACGGACCGCGACGCCGGGACGGGCGCGGACGACGTCAGCCGCGAGGAGCTGcacgccgcgcgccgccgcgtcGACGGCcggctgcgctacgactgccgCGTGTGCGGGCGCGCGCTCGCCTCCGCGCACTCCTACGTGTGCCACGCGCGCATCCACTCCGGCGCGCGCCCCTGCGTGTGCCACCTCTGCGGCAAGCAGTTCCGCGCGCCCGCCGGCCTCGCGCGCCACCTCGCCGACACGcaccgcgccgcgcgccgcgcctGCGCCCTCTGCCGCCGCTCCTTCGCCAGCGCGCGCGGCCTGCGCCAGCACGCGCGCCTGCACTCCGGCGAGCGCCCGCACGCCTGCCCCAGCTGCGCGCGCGCCTTCGCCACCCGCGCCGGCCTGCGCGCGCACGCGCGCTCGCacgccgcgcgccgcccgcaCGCCTGCGCGCTGTGCGGCGCCGCCTTCCGCCTGCGCGCCGCGCTGGCGCGCCACCGCCTCGCGCACTCGGGCGAGCGCCCGCACGCGTGCGCGCTGTGCCCGCGCGCCTTCCGCTCGCGCCACGAGCTGGGCGCGCACGCGCTGGCGCACTCGGGCGCGCGCCCGCACGCGTGCAAGCTCTGCGCCGCCGCCTTCCGCCAGCGCCGGGCACTGCGCCTGCACTGCGCGCGCGTGCACCCCGAACACGCAATAAATCATTCCAACTGA
Protein Sequence: MYNFRSSDPHSLSAIIKSMLTDDYFKVFDIDTEGSNVEYVCQICPGNPTSRTIDNLSYHLTYSHPTYIINKQSVEKFIKKNITFEEILDDHLIDEDPELRTIIQLPNYFCPFCDSAFSSPTRLVCHLNKHIEVNLDNGVTCCDNRYPNKKSFVAHLQTSHIDKNVHGKEICKSCGFATNYMDDLQSHISKAHPESKNDNEKKKKDPSPKNQKFIPAVCPECDKVFSNKYNMLVHMKNHSKSSVKFACDKCNRTYTSRGNLSHHKKIAHEGLLPFPCPLCGEAFPSRMARDVHTRIHTGSKPFCCQICDKSFRAKNSLERHIDMHLDIRKWSPYSDQDEIYGNAIEHIVVGTAAEFYTEPSSSDDEPLATLANRNKTELYKKFYIALKEFRDHFASDHHGQLSHSDFSDSTDSESDGGDDNAQETDAKYYDDLTDRDAGTGADDVSREELHAARRRVDGRLRYDCRVCGRALASAHSYVCHARIHSGARPCVCHLCGKQFRAPAGLARHLADTHRAARRACALCRRSFASARGLRQHARLHSGERPHACPSCARAFATRAGLRAHARSHAARRPHACALCGAAFRLRAALARHRLAHSGERPHACALCPRAFRSRHELGAHALAHSGARPHACKLCAAAFRQRRALRLHCARVHPEHAINHSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00782869;
90% Identity: iTF_00778986;
80% Identity: -