Hcha005772.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- -
- Assembly
- GCA_030704555.1
- Location
- CM060814.1:15913470-15936135[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00055 0.043 14.8 1.1 1 23 292 314 292 314 0.99 2 11 0.0026 0.2 12.7 1.9 1 23 321 343 321 343 0.98 3 11 9.4 7.2e+02 1.5 0.3 1 8 347 354 347 370 0.81 4 11 4.3e-05 0.0033 18.3 0.9 1 23 377 399 377 399 0.99 5 11 3e-06 0.00023 22.0 5.1 1 23 405 427 405 427 0.98 6 11 0.0001 0.0077 17.2 1.1 1 23 433 456 433 456 0.96 7 11 1.6e-05 0.0013 19.6 0.8 1 21 461 481 461 486 0.93 8 11 0.00088 0.068 14.2 0.8 1 23 494 517 494 517 0.93 9 11 7.5e-05 0.0058 17.6 1.1 2 23 524 546 523 546 0.96 10 11 1.5e-07 1.2e-05 26.0 0.7 2 23 563 584 562 584 0.97 11 11 0.012 0.94 10.6 0.6 5 23 593 612 590 612 0.90
Sequence Information
- Coding Sequence
- atggaaatatgccAAACTTGCTTAAGAACGGGAAACTACGTTCACCCTATGACTActgaagatttaaaatattatcagttGTTTATGAAAACGATTGAAGAtccgttaaatatattatacatatgtatatactgtAGGaggttattgaataaaatagtaAAGTTCACAGAACAATGTAAGGTTGCTGATATTTGGCTAAGAGAAAAAGTAGACAAGattgatataataccaaataaacatagttatttagttaaatcaacacccacatattattatttaggtcCAGAAAATCAATTTTCAGTTAAGTTAGAAGATATAAAACAAGATAAAGTGCATGAGGATGACCTTcctttagttttattaaatggaaataatgatTATGACAGTAATAGTGTGAACGATAATCATGATCTTGATAGTAACAGTGTATTTGAGAGTGGAGATATTCTGattGATAAAACACCAAAGTTACAAAGTAATTTAGTTCATTCGAcacctacatattattatttgggCCCAGAAAGTCGATTTTCTGTTAAATTAGAAGATATTAAATCTGATGAAGTGGATGAAGATGACATTCCTTTAGTTTTATGGAATGAAAATCATGATTTTGATAGTAACAGTGTAATTGAGAGTGGAGTTAAGGTGgaaaaccCCCTAACTAAAGATGTTGATATTACCacagaatatacaaaaaaagataaagaacaCAGCtccacaaaaaaatgtaaaaagaaagaACTTAGAGAAGGTTTCTCGTCCAGAATGGTTATGGAGACCAATGAATATGTAGTTATTAAGCTCACTAAGGAACAAattttAGAAGAAATGCAAAACTATGCGAATAGtgagaaatataaaatgttgccaTACAAATGTGTTAAATGTGTGAAAGGATTTAACTTTGAAGATGTATTACAGAGTCATATGAAGAAACATTCTGAGaaaaatgGTCCATTCCGATGTGAATTGTGTGAACAGTATTGTCCAAGCAAAGTATCGTTACGTGGTCACATGAAATCACATTCTTCTagGTATAAATGTAAGCTATGCAATATAATCCGTCTCTCCCGCCAACATATAGTAGAGCACTACTCGCTAGAGCACGCGGCGTCGCCCGCCGTGTACAAGTGTCCGGATTGTGATTACACTACCAAtaaacGTACAGCAATGCAACGACACGTCAAAATACACTCAACAAATGAACCACATAAGTGTCATATATgtggtaaatattataaaactaaagattCATTGAGAATTCATATAATGCGCCACGACGATAAAAAACTACACCAATGCGAGGTATGCAGCACATCGTTCGTGTACGCCATGCAACTGAAGAAGCACGTGCAGTCTGTGCACGTGCTGAAGGACTTCTACTGTGTTGAGTgtgatattatgtttaaatctaGGGATAATTTGAAACGACACTTGGAACGTGCCAAAAAGCACCGTGACGCATCTGCTTATAAACATGAATGCCAAACCTGCAAGCAACGTTTCATATCGCCGTCCTCCCTCGCGTCGCACAGCGCGCGCGCGCACGGCGGCGCGCGGCCCGTGCCGTGCGCGCACTGCGGGCGCCGCTACTGCAGCCGCGACGCGCTGCGCTGGCACGCCCGCAGTGCGCACGCGGCCGCCGGCGCGGGCGGTGCGGCCGCCGCGGCCAGGGCGCGCGTCACTTGCGAACTGTGCGGGAGGAGCTTCTCGCGCAAGTACGTGCTGCGCGTGCACATGCGCACGCACAGCGGCGAGCGGCCGCACGCGTGCCACTGCGGCGCCGCCTTCACGCAGCGCGCCGCCCTGCGCGCGCACCTCGCCGCCAAGCACGCGGCGCGCGACTGA
- Protein Sequence
- MEICQTCLRTGNYVHPMTTEDLKYYQLFMKTIEDPLNILYICIYCRRLLNKIVKFTEQCKVADIWLREKVDKIDIIPNKHSYLVKSTPTYYYLGPENQFSVKLEDIKQDKVHEDDLPLVLLNGNNDYDSNSVNDNHDLDSNSVFESGDILIDKTPKLQSNLVHSTPTYYYLGPESRFSVKLEDIKSDEVDEDDIPLVLWNENHDFDSNSVIESGVKVENPLTKDVDITTEYTKKDKEHSSTKKCKKKELREGFSSRMVMETNEYVVIKLTKEQILEEMQNYANSEKYKMLPYKCVKCVKGFNFEDVLQSHMKKHSEKNGPFRCELCEQYCPSKVSLRGHMKSHSSRYKCKLCNIIRLSRQHIVEHYSLEHAASPAVYKCPDCDYTTNKRTAMQRHVKIHSTNEPHKCHICGKYYKTKDSLRIHIMRHDDKKLHQCEVCSTSFVYAMQLKKHVQSVHVLKDFYCVECDIMFKSRDNLKRHLERAKKHRDASAYKHECQTCKQRFISPSSLASHSARAHGGARPVPCAHCGRRYCSRDALRWHARSAHAAAGAGGAAAAARARVTCELCGRSFSRKYVLRVHMRTHSGERPHACHCGAAFTQRAALRAHLAAKHAARD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00779679;
- 90% Identity
- iTF_00782833;
- 80% Identity
- -