Hcha004470.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliconius charithonia
Gene Symbol
-
Assembly
GCA_030704555.1
Location
CM060813.1:6336589-6347248[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.1e-05 0.007 17.3 0.1 3 23 129 149 128 149 0.97
2 17 8.3e-07 6.4e-05 23.7 1.2 1 23 155 177 155 177 0.99
3 17 5.1e-06 0.0004 21.2 2.7 1 23 183 205 183 205 0.99
4 17 3.4e-06 0.00026 21.8 2.6 1 23 220 242 220 242 0.98
5 17 4.7e-05 0.0036 18.2 3.1 1 23 257 279 257 279 0.98
6 17 3.3e-07 2.5e-05 25.0 1.5 1 23 294 316 294 316 0.99
7 17 0.00015 0.011 16.7 2.8 1 23 322 344 322 344 0.98
8 17 8e-06 0.00062 20.6 1.7 1 23 350 372 350 372 0.99
9 17 0.033 2.6 9.2 1.8 1 23 379 401 379 401 0.98
10 17 5.5e-07 4.3e-05 24.3 2.3 1 23 407 429 407 429 0.99
11 17 0.038 3 9.0 1.8 1 23 436 458 436 458 0.98
12 17 2.3e-06 0.00017 22.3 1.5 1 23 464 486 464 486 0.99
13 17 0.00043 0.033 15.2 0.7 1 23 493 515 493 515 0.99
14 17 2.5e-06 0.00019 22.2 1.9 1 23 521 543 521 543 0.98
15 17 0.0018 0.14 13.2 0.3 1 20 549 568 549 571 0.93
16 17 3.4e-05 0.0026 18.6 1.3 2 23 578 599 577 599 0.96
17 17 3.2e-06 0.00025 21.9 1.4 1 23 605 628 605 628 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAGATCAAAGCAGAGCCTATGAGcttttatCCGCATCCTCATGTAAACACAGGCCCCCCTACAATAATCCGTTCAGATACAAACCATGGTATAATTAACATGAACCAACACCATCCAGAAGATTCAAAAGATAGTCTTATAGTACAACAGCAAGTACAACACCAGGAGCTGCTGGATCAGCACCAACAACATGAAGAGTTGAATGAAGATGAGGTTGATAATttaagtTTCAAAGGAATGGAGGATGAAGGTGTTGAAATGGATATGGATGGCCGTGGCTGTTCTCAGGGTATGGGGGTTGACATGGGATCAGTTCAAACTAAAATGGAATTATCGAATGGTGGTCAAGTCCCAAGATCCAAACCACAGGCCTGTAAGgTCTGTGGGAAAGTCCTATCATCTGCCTCATCTTATTATGTGCATATGAAATTGCACTCTGGAAATAAACCCTTCCAATGCACGGTGTGCGACGCAGCGTTCTGCCGCAAGCCGTACCTGGAGGTACACATGCGCACGCACACCGGCGAGCGCCCCTTCCAATGCGACCTCTGCCTCAAACGCTTCACGCAAAAGTCAAGTCTCAATACGCACAAACGTGTACACACTGATGAGCACATGCGGGCTCTGATGGTGAAGGAGCGCCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACATACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGAAAAATACACACCGAGGAGCACATCCAATCGCTGATCCACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTACACGAAAAGATACATACGGGCGAGCGGCCCTATCAGTGCGGCGCGTGTCTCAAACGCTTCACGCAGAAGTCCAGCCTCAATATCCATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCCTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGCCCCTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTGAACATCCACAAGCGGACGCATTCGGTGCAGGGCCGGCCGTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTGTGCCTCAAGAGATTCGCGCAAAAGTCCACACTCAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGCACGCACACCGGCGAGCGCCCCTTCGAGTGCGATGTGTGTTACAAGCGCTTCACGCAGAAATCCACGCTCAACATCCACAAGCGCATCCACACCGGAGAACGTCCATATGCATGTGATATTTGCCAAAAAAGATTTGCAGTCAAAAGCTATGTAACAGCGCACAGGTGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGTTCCATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCCAGCGGGCCCTGCTACGAGTGCAGCGTGTGCGGCCGCACCTTCGTGCGCGACAGCTACCTCATACGACATCACAACCGCGTGCACCGTGAGAACCACAGCAACGTGTCGGCCAACAGCATTGGCACCATCAACAGTGTTGCCACCAACACAAATAATGGCGGATTCGAGAGCCCTGGCGTTTGTGACTTAAGCTTTGTGCCAATGGTGAACCGGTACATGACGTCGCAGGGCACGCAGGTGTCGATGCAGGACACGCAGAGCAAGATGGCGGCCATGTCGCCGCAGTCCATCGCGTCTATTTCATCTCCGCCGCCGCCGCACACGCCCACACCGCAGCCGCAGATGTCGATGCGACTCGCTGATTGA
Protein Sequence
MFEQQIKAEPMSFYPHPHVNTGPPTIIRSDTNHGIINMNQHHPEDSKDSLIVQQQVQHQELLDQHQQHEELNEDEVDNLSFKGMEDEGVEMDMDGRGCSQGMGVDMGSVQTKMELSNGGQVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLIHKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCGACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHASGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNGGFESPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMAAMSPQSIASISSPPPPHTPTPQPQMSMRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_00248309;
80% Identity
-