Haoe002736.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000069.1:214323-228221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00035 0.021 15.4 0.2 2 21 35 54 34 55 0.93 2 12 0.15 9.3 7.1 0.3 1 12 220 231 220 240 0.86 3 12 9.9 5.9e+02 1.4 0.3 1 19 369 387 369 387 0.96 4 12 6e-05 0.0036 17.8 0.4 1 23 394 416 394 416 0.98 5 12 0.0011 0.067 13.8 1.7 1 23 436 458 436 458 0.98 6 12 9.6e-05 0.0058 17.2 0.7 3 23 513 533 511 533 0.96 7 12 0.00065 0.039 14.6 2.6 1 23 549 571 549 571 0.98 8 12 1.1e-06 6.4e-05 23.3 3.8 1 23 577 599 577 599 0.98 9 12 0.0042 0.25 12.0 5.3 1 23 605 627 605 627 0.97 10 12 2.5e-05 0.0015 19.0 0.3 1 23 633 655 633 655 0.97 11 12 0.00039 0.023 15.3 0.2 1 23 659 681 659 681 0.98 12 12 0.00054 0.032 14.8 0.1 1 23 689 712 689 712 0.96
Sequence Information
- Coding Sequence
- ATGGGAGAACCACTTTTATTATGTTGTCCTCTTTGTTGCAACGATACATTTGGATCGAAACAGGCACTTTatgatcatttatttaatatatcatctaatttaatttgttccctgtgtaataaaagattttcgaCATTGGAACAACTTGTAGATCACTTAAAGTCTGATGGTTgcgaattaataaatatcactCAAACCAATGCTACGTTTGAGGAAAGTTCACAAAATGAAACTAATGAAAACTCTTTAAATAACACAACTTTGAAGCTAGAGTTACATAATGgtcatataacaattaatgatTTAGAAGATCAAATTGCcacaataaaatcaaatgtaaACCAAGGTTCTGAAGTAGGAAAAATGTATGTTGAATTACTTAGTAAGCAACTAATGAAACCATGCTTGCAAACTCAAGagttaaaattagtaaaagaaGATGGGCAAAGTCGCTATGTGATTTTAACAAATGAAGAATCTGTTTTAAATTCAGGTGTTGCCATTGTAACAAAGCAAAATAATGATGGGACAATATCATTAACTACCTTAAAAGataCACAAACTgttgtaaatacaaatgttaaaaCTGAGAGTGAAAACACTATGCCTCTAGAAACTATGCAGGAAACAGAGCCTGAAAAGAACCAAGAGGAAGTCTATAGTTGCAATACATGTGGTGTATCATTTTCATCTGTACTGGAAcacatacaaaattatcataataaccAACATGTTGTAGTTGAGGAACCTTTAGAAGACAATAATAGCAGTACAGTAGAATATGAACAGATTGCAACTGAAGAAGTATCAGATAAACAAATTTCTAGAAGAATGATTACAGAAACTGGCGATATAATAGAGACACCTTTGATTGAAGAAGATACAATCAATGAGGcgTCAAATAAAACCGTGAAATTTTTGATTCCAACAAAAGACGAAAATCATGATAAAAAATTGCGCACTCACTCTAGGCGATATCTACAAATCGATAAGTTTCGTAACAGTATAATTAAggataataaatcaaataatgatAAGGAAGGACCGTACCACAAAGTAGTTATCAAAGAAATGCAAACATTAGATGgtgaaaaagtgaaaatcTACAATTGTATGTCGTGTAACGTGTATGTGTCGAGTCTTTCCGAATTCAATCAACATCCttgtaaaatttTGAAATATCCGTGTTCCCAATGTCCTGTAGCCTACGAAAATTCAAAGTCATTATGTGCACATATGAAAGTGCATAAAACAAGaacagaatttggtGCAGATACTACATATGCAATACCACCTCCAGAGAAGTTTGAATGTGAGACATGCAACACAGTATTCCTTACAAGTAAATCATTGAAATTGCACAAAAGGATGCACGATCCtgtcaaatatcGCCCCATAGAACCTCCAATAGAAACAAGTGATGGCACTGTAGGCAGCAACGACAAATTCTTATGTTCAAtatgtcataaaataatacctaTGGATTACAGAACTATACATCAgaattcacataaaataaataatactacgaTAAATTGTGATATATGCAACAAGAAATTTATGTCTaaggaatttttaaatatgcatatGAGTGTGCATAATTTGGATAAGGTAACGATCGGCAAACAAGATAAATCTCTTCCATACACATGTCTCTACTGTAATAGGAAATTTGCGAGACCACACGAAAAAGTTAAACACGAAAGGATACAtacagGCGAGAAACCCCACAAGTGCGGCATCTGCGGCAAGTCGTTCCGCGTGGCGTACTGCCTCACGCTACACATGCGCACGCACACCGGCGCACGCCCCTACGCCTGCGCGCACTGCGGCAAGAGGTTCAAAGCACACAGTGTGTACAACCATCACTTGTTAACACATTCGGAAGTCCGCGGGTACAAATGTCCGTTATGTCCCAAAGCGTTCAAAACCTCAGTGCAGCTTGCAGGTCATAAATATTCCCATACTAAACCATTCTCCTGTCAACAGTGTAATAGGCCGTTCGCATCGCTGTACGCAGTTCGTATGCATATGGAAGTGCATACAagacaaaacaatttaaagttttcttgCACATTATGCGGGGCGAGCTACGCGCGAGCATTCGCTCTCAAGGACCACGTGAAGCAAGTGCATAAACAGAATGTCGATAAAAGTGATTTGGTGTCACTGAAAGAAGAAAGCTGGATTGTACAAGAGAATACGGACGGATCTGATAGTCTCAAAAAAGAATTGCCTCAAGAGATTAATCAACTgagtattattaattcaagCGAACTGATAGTTCCatag
- Protein Sequence
- MGEPLLLCCPLCCNDTFGSKQALYDHLFNISSNLICSLCNKRFSTLEQLVDHLKSDGCELINITQTNATFEESSQNETNENSLNNTTLKLELHNGHITINDLEDQIATIKSNVNQGSEVGKMYVELLSKQLMKPCLQTQELKLVKEDGQSRYVILTNEESVLNSGVAIVTKQNNDGTISLTTLKDTQTVVNTNVKTESENTMPLETMQETEPEKNQEEVYSCNTCGVSFSSVLEHIQNYHNNQHVVVEEPLEDNNSSTVEYEQIATEEVSDKQISRRMITETGDIIETPLIEEDTINEASNKTVKFLIPTKDENHDKKLRTHSRRYLQIDKFRNSIIKDNKSNNDKEGPYHKVVIKEMQTLDGEKVKIYNCMSCNVYVSSLSEFNQHPCKILKYPCSQCPVAYENSKSLCAHMKVHKTRTEFGADTTYAIPPPEKFECETCNTVFLTSKSLKLHKRMHDPVKYRPIEPPIETSDGTVGSNDKFLCSICHKIIPMDYRTIHQNSHKINNTTINCDICNKKFMSKEFLNMHMSVHNLDKVTIGKQDKSLPYTCLYCNRKFARPHEKVKHERIHTGEKPHKCGICGKSFRVAYCLTLHMRTHTGARPYACAHCGKRFKAHSVYNHHLLTHSEVRGYKCPLCPKAFKTSVQLAGHKYSHTKPFSCQQCNRPFASLYAVRMHMEVHTRQNNLKFSCTLCGASYARAFALKDHVKQVHKQNVDKSDLVSLKEESWIVQENTDGSDSLKKELPQEINQLSIINSSELIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782054;
- 90% Identity
- -
- 80% Identity
- -