Basic Information

Insect: Heliconius aoede
Gene Symbol: -
Assembly: GCA_037355905.1
Location: JBAIZZ010000157.1:134115-140522[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0063 17.1 0.1 2 23 196 218 195 218 0.95

2 12 3.2 1.9e+02 2.9 0.6 2 23 219 245 218 245 0.81

3 12 0.0063 0.38 11.5 3.4 1 19 279 297 279 302 0.94

4 12 0.32 19 6.1 0.2 5 23 311 329 310 329 0.94

5 12 0.066 4 8.3 1.5 3 23 337 357 335 357 0.96

6 12 3.9e-05 0.0024 18.4 4.1 1 23 365 387 365 387 0.97

7 12 6.5e-05 0.0039 17.7 0.8 1 23 396 419 396 419 0.98

8 12 0.00022 0.013 16.0 0.2 1 23 425 447 425 447 0.97

9 12 1.7e-06 9.9e-05 22.7 2.4 1 23 453 475 453 475 0.98

10 12 0.0004 0.024 15.2 0.6 1 23 480 502 480 502 0.97

11 12 3e-06 0.00018 21.9 4.2 1 23 508 530 508 530 0.97

12 12 0.00017 0.01 16.4 2.7 2 23 537 559 536 559 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0063	17.1	0.1	2	23	196	218	195	218	0.95
2	12	3.2	1.9e+02	2.9	0.6	2	23	219	245	218	245	0.81
3	12	0.0063	0.38	11.5	3.4	1	19	279	297	279	302	0.94
4	12	0.32	19	6.1	0.2	5	23	311	329	310	329	0.94
5	12	0.066	4	8.3	1.5	3	23	337	357	335	357	0.96
6	12	3.9e-05	0.0024	18.4	4.1	1	23	365	387	365	387	0.97
7	12	6.5e-05	0.0039	17.7	0.8	1	23	396	419	396	419	0.98
8	12	0.00022	0.013	16.0	0.2	1	23	425	447	425	447	0.97
9	12	1.7e-06	9.9e-05	22.7	2.4	1	23	453	475	453	475	0.98
10	12	0.0004	0.024	15.2	0.6	1	23	480	502	480	502	0.97
11	12	3e-06	0.00018	21.9	4.2	1	23	508	530	508	530	0.97
12	12	0.00017	0.01	16.4	2.7	2	23	537	559	536	559	0.95

Sequence Information

Coding Sequence: atggctctgaatataaaagaattatgtAGATTATGTGCCAAAAAGGATGAATTTTCCAAGGACTTAGTTGacgaagctaataaaaatgttctaaAAATGATACAAGAATTTGTACAAATACCGGTTCTAGAAAGTGAAGAATTACCTTCAAAAATATGCTTGAATTGTGAAGATACAGTAGTATCATTTCAACTTTTTGTATTAGAATGTTTGAAAGTACAAGAAACgctaagaaaaatgtatatagaatcatgtaataaatatccCATTAAAATTGAACAAGATATGGTTGAGTTTGATGTAGCAATAGCAGCCGTAAAGTCCGAGGTTAAAGATGAATTAACAGCTGCAGACATAGTGAGTGCTATAAACAATGATGAATCTATGTCTGGTTTGGATGGTCATGATTATATCAGTGATGATAAACATGACAGTGATGGGGACTTAAGTGATGTAACATTAGCCACTTTAAAGGAAACTAAAGCCAAAAAGGTGAAACGAAAAGTATTAAGTGAAGAGGAAGAAGATGAAttccaaaaattattaaaaaaatctaatttaaatgttaaagacTTTGTAAAATTACAGTGTGACTTATGTGGTGAAAGTGTTAAGACGTGGAGTGGATTAAGAATTCATTATGCAAAATTTCACAAATGTAAACCAATGTTGAGTTGTGCCTGTGGCTTTGTTATAAGGTCCAAAAGTGTTCTTTACAAACACGTATCAGATCATAGAGTGGAAAGCAGAAAACTTAAAAAGACTGTTGATTCTGATTCCGATAAACAAGATGATGAGAAATATTCCAGTTTAAATGTTACGGACTTTGTCAAttttgcTTGTTCAATTTGTCAGAAACAATGCAAGAGTTGGTATAGTCTAAGAGCTCACTGTGAAGAGGAACATAATGTAATGCCTGTGGTCAGCTGCGTTTGCGGAATCAGTCTTAAATCTAAATCTGTTTTATACAAACATGTGCAAGATCATAAAAATCCGAATGTTATATGTTGTGACAAATGCCCAAGAATAACGAAAACAATGGCAGCAATGATCAAACACAAGATGAGACATGTACCAAAGTCAGAAAGAAAGTTCTGTTGTTCCTCCTGTGATAAAGTATTCAATTCTAAAGACACACTTAAGTCCCACGAACGGTCGCATATACCCATAGAGGAAAGGAAGATATATCGCTGTGAAATTTGTGATTTAAAGTTCACGACGCGGTCGTCGGCGTCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGAGCTACGTATGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGTGCCATACACAGCGACGACAAGCCCTTCGTGTGCCGCACCTGCTCCAAGCCattcaaAACATATTCCAACTTGAAAACCCACATGGACACTCACGAGGACACCTCGTACGCGTGCTATGTGTGCAACCGCGTACTGAACAGCCGTCGAACGCTGCGCAAGCACTTGCTGGTCCACGAGGACAAATGTCGGCACGTGTGCTCGTACTGCAATAAGGCGTTTAAGCGACGGCAGACTTTGAAGGTCCACATGTACACGCACACGGGCGACAAGCCGCTCAGCTGCAAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACCTTGCGCTCGCACCGCCTGCGCTGCCACCCCGATAAGATGGCGGGCCACTACTCCGGGTACGCCGCCCCCGTGCAACAGGGTTACATTAAAAACGATCCGATTCCTTCTAAAAACGACGTGGAAGCGATATAA
Protein Sequence: MALNIKELCRLCAKKDEFSKDLVDEANKNVLKMIQEFVQIPVLESEELPSKICLNCEDTVVSFQLFVLECLKVQETLRKMYIESCNKYPIKIEQDMVEFDVAIAAVKSEVKDELTAADIVSAINNDESMSGLDGHDYISDDKHDSDGDLSDVTLATLKETKAKKVKRKVLSEEEEDEFQKLLKKSNLNVKDFVKLQCDLCGESVKTWSGLRIHYAKFHKCKPMLSCACGFVIRSKSVLYKHVSDHRVESRKLKKTVDSDSDKQDDEKYSSLNVTDFVNFACSICQKQCKSWYSLRAHCEEEHNVMPVVSCVCGISLKSKSVLYKHVQDHKNPNVICCDKCPRITKTMAAMIKHKMRHVPKSERKFCCSSCDKVFNSKDTLKSHERSHIPIEERKIYRCEICDLKFTTRSSASSHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRTCSKPFKTYSNLKTHMDTHEDTSYACYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRCHPDKMAGHYSGYAAPVQQGYIKNDPIPSKNDVEAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00897149;
90% Identity: iTF_00621430;
80% Identity: -