Haoe011582.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000305.1:1791952-1796636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.071 4.3 8.2 0.7 1 21 78 98 78 99 0.95 2 21 0.012 0.7 10.6 0.3 2 23 171 192 170 192 0.97 3 21 0.016 0.94 10.2 0.1 1 23 196 218 196 218 0.95 4 21 1.7 1e+02 3.8 0.7 1 15 223 237 223 246 0.78 5 21 0.045 2.7 8.8 0.2 1 23 252 275 252 275 0.94 6 21 0.0018 0.11 13.2 1.2 1 23 282 305 282 305 0.98 7 21 2.8 1.7e+02 3.1 0.4 1 19 432 450 432 454 0.86 8 21 0.018 1.1 10.0 1.1 2 21 479 498 478 501 0.89 9 21 0.0063 0.38 11.5 1.6 1 23 523 545 523 545 0.98 10 21 7.3e-05 0.0044 17.6 1.1 1 23 549 571 549 571 0.98 11 21 0.19 11 6.8 1.1 1 23 605 628 605 628 0.92 12 21 0.023 1.4 9.7 1.3 1 23 676 698 676 698 0.97 13 21 0.25 15 6.5 0.3 2 23 722 744 721 744 0.93 14 21 0.0096 0.57 10.9 2.6 3 23 768 788 767 788 0.98 15 21 0.00014 0.0081 16.7 3.6 3 23 794 814 793 814 0.97 16 21 0.19 12 6.8 3.0 1 23 821 844 821 844 0.97 17 21 0.00028 0.017 15.7 2.8 1 23 850 873 850 873 0.97 18 21 0.0016 0.098 13.3 0.7 1 23 879 902 879 902 0.97 19 21 0.00033 0.02 15.5 0.5 1 23 908 930 908 930 0.97 20 21 5e-07 3e-05 24.4 1.0 1 23 936 958 936 958 0.99 21 21 7.7e-05 0.0046 17.5 4.3 1 23 964 986 964 987 0.93
Sequence Information
- Coding Sequence
- ATGGACAGTGGAAGAACTTACTCaggttttctatttttaggaGAACGCGGTCAAACAGAAAACAGAAACGATAAAACATCTGAAAATTTACTGTCTATTGATACGAAAGTTATTGAAAAACGTCGTTATCAGCGAAGTGCGAGAGCTGAAGCaagatttataacaaaaaagaacGCCACAGCATTGCTTGAATGTTGGTCGTTATGTCCATTTAGGTGGAaaagaaatagatttaaatgtgCTTATTGCGAAGATAACTTCACCGAATGTTCAGAGCTAAGAGAACATGTTAAAATATGCTCGATACAATATAGCGTCAAAGATATTTACAGTAAATTCAAAGAAATGTCACTGATAAATGTTGATATTACTGAGGCCATCTGTAGAATTTGTGCCATACCATTTCAAGGTATTCTTGAAATGCGAAACCACGTTATTGATCACGGGTATGACGTAGATACTACATATCCTGATGGCGTTTTGCCATTTTGTTTGAACAAGGAATCTTGGAGATGTGTAATATGTTATGAatcttttaacaattttctcAAATTGTACGAACACATGAACATACATTATCAGCATTACATATGCGCGACTTGCGGTAAAGGATACATGACGGCGCCGAGATTGCGTAAACATTCTGAAGTACATATAACTGGGAATTTTCCGTGTGACAAGTGTCGGCGAATTTTCACCATGCGCGCAGCTAGAGATTATCATAAAGCTCATGCTCATGCTAAGGGACCTCGTTACGAATGTCCACAATGTAATATGAGGTTTGGAGGCTACTACGAAAGGATGAATCATTTGAATGAGGCTCATAGAGAAAAGGAAGTTTCTTACAAGTGTGCTCATTGtgaattatcttttaaaactaGCGGAAAACGAGCTATTCATGTTAGATCCGTTCATTTTCCACAGCAACGCAACTTTGCTTGTCCTTTTTgttccgCTATTGCGGATTATGAAGAGTTAGTAGTAGGAGTTAAGCGCGTTAGAAAGTTAAAGGAGAACGTCTGTGCGAGGCAAATGCGTCGTCGACGGCGCGCCAATAACGAGCTTCCAGAAGAATCTGAGAAAAGAATATCTAAAACAATGATGCGTAGAAATGCCATGACGCTTCTCGAATATTCAACTGCTTGGGCCTTCCgcACAGAAGGCATCGGAACAACAAAACATTCAATAGCGATTGATTGGAGAAAGAAACGACCATTTTTAGAGAATAAGGCTAATTCGGCCGTGATACTAGATTGCTCAAATGCTATAGTATTTCGATGGTCGCGTGGTAAATTTCTTTGTGCCTATTGTCCAGAAATATTCCAAAACGTAGCAGAAATCCGCAAGCACTGCGATGTACATGAAAAGCTTACAGTACTTCAAAAACTAGAAGTGCACAAttcatttccattaaaaatagatataacagATTTAAAGTGCACGCTGTGTAATAAtagtttcaaaaaattaacGGATTTCAAAAGTCATTTAGTTGACGTTCACAGTAAAGTTTTCGACTCAAACTACGACGACGGTGTTATTCCATTCATACTTACAGGCTCAGAGTACAGATGTGTCATTTGTCACAACTTGTTTGAAAGCTACGTGAATCTATTTAGTCATATGAATGAGCATTATCAAAGTTTTGTATGCTACACGTGCGGTAAAGGATATTCGGCAAAATATAAACTGCGAGCACATCAGAAAAGTCACGAGATCGGTAAAGTGCCATGTTCAAGATGTgacttagtatttttaaatcatgttataaaaaatcggCACGTGGCTACAGTGCATGGATCCAAGAAAAGGTATCGTTGCCCAATTTGCGCTATGGCTTTCGAATCTTGTCATTCGAGATTGATACATCTTGGGAAAGTGCATGGACAAAAAAGCGAATATCGATggACATTCACGACGTTTATATGGAAACGTGGACGAAGGCTTTACAATGATCACAGAGATAACGCCGCTACTATTATTCAATTCTCAAACGTTTGTCCTTTTCGCTGGAAACGCGGAGCTTTCGCTTGCTCTCATTGTCCGAGCACTTTTGGCAACTTTAAAGACGTTAGCAATCATATGCAGGAGCATCCTAATCGCCTTGAGGCAATGCGATATGCTCGCCCTTATGATAATGTAAAGGTGGAAATAAGTAACCTTcaatgtaaaatttgtaatgaaaatatgaatggcTTAGAGCATCTTAAAGAGCATTTGTTGGAAGTTCACCAAAAATCAATAACAAAAGATGTTAGTCTTGGTGTAAccccttttattttaaaagacaaaGAAATGCTTTGTACCCATTGTGATGAACGTTTTGTGTTGTTTTCGAGACTAAACAGTCACATGAATCAACACTATCCAAATAATATCTGTCCTCACTGCGGTAAATGTTTCTCTGCTGCTCATCGGCTTAAGGCTCACCAGCTAATACATGAAACTAATCACCAAGAGCATAAATGTGCCAAATGTGGTGATATATTCGAGACGCGAACGTTAAAAACTTATCACATGAACACTAAACACGCTACAGAAAATCGATACAGATGTCCCTATTGTAGAATATCGTTTAAACGGTACTCAGATAGAGTTCGTCACCTGAAGCAGTTTCACAATCAAAGCGTCGAATATCCATGTCATTTATGTACAGCAGTTTTCGCTATGTCCGACCAAAGAACCAAACATATAAGAAACGTTcatattaaacttaaacaaTTTCAATGTGATTTCTGTCCAAATAAGTTTGTTACTGCCGGTCAGTTGAAGAGTCATTTAGTGAAGCACAATGGTGTCAAGGAATACCAATGCAACGTGTGCAAAAAGAGTTACGCGAGAGCTAGAACTTTGAAAGAACATATGAGAATACACAATAATGATAGAAGATTCCTTTGCGAATACTGTAATATTGCGTTCATTCAAAAGTGTAGTCTTAAAAGTCATATCCGAACACATCACCCGAGTGCGTGA
- Protein Sequence
- MDSGRTYSGFLFLGERGQTENRNDKTSENLLSIDTKVIEKRRYQRSARAEARFITKKNATALLECWSLCPFRWKRNRFKCAYCEDNFTECSELREHVKICSIQYSVKDIYSKFKEMSLINVDITEAICRICAIPFQGILEMRNHVIDHGYDVDTTYPDGVLPFCLNKESWRCVICYESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHITGNFPCDKCRRIFTMRAARDYHKAHAHAKGPRYECPQCNMRFGGYYERMNHLNEAHREKEVSYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCSAIADYEELVVGVKRVRKLKENVCARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLEYSTAWAFRTEGIGTTKHSIAIDWRKKRPFLENKANSAVILDCSNAIVFRWSRGKFLCAYCPEIFQNVAEIRKHCDVHEKLTVLQKLEVHNSFPLKIDITDLKCTLCNNSFKKLTDFKSHLVDVHSKVFDSNYDDGVIPFILTGSEYRCVICHNLFESYVNLFSHMNEHYQSFVCYTCGKGYSAKYKLRAHQKSHEIGKVPCSRCDLVFLNHVIKNRHVATVHGSKKRYRCPICAMAFESCHSRLIHLGKVHGQKSEYRWTFTTFIWKRGRRLYNDHRDNAATIIQFSNVCPFRWKRGAFACSHCPSTFGNFKDVSNHMQEHPNRLEAMRYARPYDNVKVEISNLQCKICNENMNGLEHLKEHLLEVHQKSITKDVSLGVTPFILKDKEMLCTHCDERFVLFSRLNSHMNQHYPNNICPHCGKCFSAAHRLKAHQLIHETNHQEHKCAKCGDIFETRTLKTYHMNTKHATENRYRCPYCRISFKRYSDRVRHLKQFHNQSVEYPCHLCTAVFAMSDQRTKHIRNVHIKLKQFQCDFCPNKFVTAGQLKSHLVKHNGVKEYQCNVCKKSYARARTLKEHMRIHNNDRRFLCEYCNIAFIQKCSLKSHIRTHHPSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -