Haoe013857.1
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000355.1:33791-38940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.026 1.6 9.5 0.2 1 23 686 709 686 709 0.95 2 14 0.0015 0.09 13.4 1.3 1 23 721 743 721 743 0.97 3 14 0.00094 0.056 14.1 4.0 1 23 786 809 786 809 0.96 4 14 0.0033 0.2 12.4 1.7 1 23 869 892 869 892 0.96 5 14 0.00079 0.047 14.3 2.3 2 23 915 937 914 937 0.95 6 14 0.057 3.4 8.5 0.1 2 23 943 965 942 965 0.93 7 14 0.0064 0.39 11.4 0.2 1 21 1009 1029 1009 1030 0.95 8 14 0.0008 0.048 14.3 0.6 1 23 1040 1062 1040 1062 0.93 9 14 5.7e-05 0.0034 17.9 0.3 2 23 1150 1172 1150 1172 0.93 10 14 1.2e-07 7e-06 26.4 1.1 3 23 1179 1199 1178 1199 0.98 11 14 0.01 0.6 10.8 0.6 1 23 1216 1239 1216 1239 0.94 12 14 0.078 4.7 8.0 0.0 1 23 1262 1284 1262 1284 0.97 13 14 0.018 1.1 10.0 0.6 1 23 1290 1313 1290 1313 0.95 14 14 0.00017 0.0099 16.4 0.4 1 23 1321 1344 1321 1344 0.96
Sequence Information
- Coding Sequence
- atgaaCGTGAATTATGACCGTGTTTGTAGACTGTGCTTGTCATCTCGATGCGAATTATTACCGATATTTCCTACCACCAGTTCGGATGACTCCGAACCTCCTGTCCTCGCCTCGAAAATCAAAGATTGCGTGTCTGTGCAGataagCGAAAATGACGACCTGCCGAGTAATGTCTGCAGGAAATGCTTGGACAATGTTAATAACTGGCATATTTTCAAGACAATATGTGAAAGGACACAAAATAAGTTACAGTCTTTCATTAATAAGGACAGCAACCTACTAGAAGAGgtcaaaataaaaaatgaaccaATGTCAGATGAAGCCTATGATGATGGAGTGATTATTGACGGATCATACCCTGACATTGAGaatgcTGGAccatcaaataaaatacaacctGAAGGTCCACCCATATTGGCATCATTGGGACTTACACCGAGGAGTGATAAGAAATATGTAGACCCTCGAATGGACTGGCACCGAGTCCATGCAATTCTGGACATGGTCCAAGAAGATGAGGTCATAGATTCCCTTCAGTCTATGGAGGAATGTGATGTCATACATCAATCTGACCATGACTCTGAATCGGaaacagaattaaataatgataccCTAGAGGACTATGTTGATTGCAAAAATGGATACATGtgcagaaacaaaaaaatattgtcaagaAATCCTAAAATATCAGCAGTTCACACAATGAAAAAAGTTAAACAAGCTGTTGAcacaagaaaaagaaattttggATCAAAAAAACATTGCCCTCAACCGAAATCTGCAtggcaattattatttacagatgATCTATTAGATTTAATTGTTACTTCAACTAatgaaaaaattgcaaaatatagtagaaaaaaaacagataaaacaaatgtttctGAAATTAGAACACTAATTGGAATACTGTATTATCATGGAATAATGAGAGCTACACATCAGAAATTCAGTGACCTCTGGAATAATGAGTTTGGAGCGCCTTGTGTTCGCAAAGCTATGCAGTTggaaagatttaaatttctcCTGCAAAACATCAGTTTTGATAATGAAGATGATGACAGCATTGTGCAATTTGATGTTATGAAACGTATAAGGaaattgtttgaaatatttgcacTGAATTGTCGTACGTCAATGGATGTAGGCAACATAGTTGTTATAGATGAAGTTATACTTCCTGTGCATGGCCCTTGTCCTTTCCGATATGAGATTAAAAGGAAAAACCTAAACAGTGGTGTCAAGTTAGTCATGTTATTGGACCCATCTAATTTTTATGTGACAAACTTAGATGTTATAACTGATCCATACTTTGGTAATGACGAAATAGTTGCAAAGTTGGTCCAACATTTAGCAGGGACTGGGCGGACTGTGATTATGGACAGCTGGTTCACATCAAATTCCATTTTACAGAGACTCTTAACTGAATACAAGCTTTTTAGTATTGGAGCTATCGGACCCTCTAATGAGTTGGTGCCaccattatttttaactaaatacagaatcaaaaagatatttatgaaTGGCTTCCTAGATGATGATACATGTCTGACATCTTATGTGAATGAAAATTCAAAAGTTGTTAATATTGTAGCAAATGAtcctaaatattacaaaaggaCACACAGCAGCCATACATCATCCgtctctttatataaaaaatatcagagTGCAATTGAAGTGATTGATGTGTTAATGCACTACTACACAACTATGCAACACACAAACGATTGGACACTTTCCTTGTTTTTTATGCTTCTCAATATAGCTTCAGTGAACGCGCAGGTTATTTGGGCTTCTGACAACACTAATACAATAGTGCAAAGACGCATATTTATAAGAGAACTCGCTATAAGTTTGACAGAGAATGACCAGCCAGTGCCATCTTTCAGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTACGTCCGTCAGAACTTGCGGAGCATAAGAACACGCATTTAAGAGTTAAATTCTATCCTTGTAGTATTTGTACGAATTCTTACAGCACACCTTTAAAATTATCTGAACATGTACAGCAGGTTCACCCTGGAGCAGGGAAGACGCAAGCGGACACGGAATTCTTTTGTGACATTTGTATAAGATCATTCAAAAGCCGCCAAGCTTATTCTAATCATATGCGTATTCATGCGAAAGTTCCTACCACTAACAGAAAACCTGGAGAAAATAAAGGTTTTGCGCCACAGATTATAGGGAAACCAATACGCCAGTTTTCTATGCAACCGGGTTTTAGTCCATATGTTCCAAATGCTCCTTATTGCTGTGATATTTGTGGAAAAGGATTTATGcacaaaaagaatatatgGAAACATAAGAAGGTGCTACATGCCGATCTTCTCGCTGATAGAAACGACAGCGAGGAGAACACAATGCAAGCGTCTACTGAAGAAGATGAATACAATATTGATGAGAATGGCGCTATATTGTCGACTCCACAATTTAACAGCtttaatttcacaaatttttCGAATAATATGCAACAAACAACTCAAGATGCTTTACCATACTCTTGTGAATTATGCTACAAGAAGTTCCCTCTAAGAACAAGTCTTTGGAAACACAAAAGGGCAAAGCACGGAATTAATGCGACTGCCGGTACAGCGGAAACTCAAATACAACCTTCCAATGAAGGCACGAGATCTAGCTGcactatttgtaaaataacctTCACAgacaaaaaatcttattaccgTCATAGAAAAAATGTTCACAAATCATCAGTACAGATGTGCAAAATATGTGGAAAACCACTAAATTCGACATTAGAACTTTATGAACATCTGAAGGCGGCGCACGCTCGGGAACTACTAGGTTATAATTCAAACCACAGTTCAAGTAAATCGCAAGATATAAGTCAAGATATGGACGTGGAGGATGACGGAGATCAGGACTCCGTCGATCCCAGCATTGACTACCAAGCACGATACCCCTGCGACACTTGTGGAAAACAGTTTGTGGGACTGTTAGCTTTACAGAACCATCAGTGTATCAATCAGATTCAAAGTCAACCACAAACATTTGACTGTGAAATATGTCACAAGAGCTACACTTCCATTGCTGCTCTGAAAAGCCACCGCGGCTGGCACTTGCGATCTCCCGATGGCAAGGCCGCTGCTAACAACTCGGGGCTTTGGATGCCTCAAAATAAAGTAACCAGCAAAGTCAGCAAACACGAAGTGGTAGACATGGTTCAAAATACTCGCTCCTCAACGTCTGCAAACTTAGCCAAGAGACGGTTACCGCCCGAAGTGGAAGTGACCGTAGTCAAccctaataaaaaattacgatcTGACGATTCCATAGACTTAGATCATCAAAATAGTTATTCTGGAGGGCCAGAAGACAGGTACTGCAATATTTGTGACAAGGAGTTCACCAAGCGAGCCGCATACCAGCGTCACATGGACGAGGTGCACCAACCGAATTCTGTATTCTGTCCGGTTTGCGACAAGTCGTTTACACGAAAATCCACGTTAATTGTACATATGAAGAAACACTACGAGGGCGGCGAGGGCAGCTCCGGCACGCAAGTAGACGAGGACGTCCACGCGTGTGAAGTGTGCGGCGCTCAGTTCGACACCGTGAAGGATCTGAACACCCACCACGCGATGGAGCATGGGGACGAAGTGGACGACACTGGGGAATCGGAGGACGACGGGGGAGCTGTGGCACCACCAGGGGAGTTCACTTGCGGCCAATGCGGGGACGGGGTGGCGACCCCTCGCGACCTGATAGCTCACCGGACAATGCACTCAACTCCCACCAAGTTCTTCTGCAACATATGCAAGGTTTACTTCGCGAGAGCCCTCGACCTATCTTCGCACACGCGAGCGAGGCACTCGGACAATGAAAAAGTGTTCTTTCCTTGCGCCATGTGCGACCGGttttatatgaacaaaaagAGTTTACAGAGACACATCGAGATGGCCCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRCELLPIFPTTSSDDSEPPVLASKIKDCVSVQISENDDLPSNVCRKCLDNVNNWHIFKTICERTQNKLQSFINKDSNLLEEVKIKNEPMSDEAYDDGVIIDGSYPDIENAGPSNKIQPEGPPILASLGLTPRSDKKYVDPRMDWHRVHAILDMVQEDEVIDSLQSMEECDVIHQSDHDSESETELNNDTLEDYVDCKNGYMCRNKKILSRNPKISAVHTMKKVKQAVDTRKRNFGSKKHCPQPKSAWQLLFTDDLLDLIVTSTNEKIAKYSRKKTDKTNVSEIRTLIGILYYHGIMRATHQKFSDLWNNEFGAPCVRKAMQLERFKFLLQNISFDNEDDDSIVQFDVMKRIRKLFEIFALNCRTSMDVGNIVVIDEVILPVHGPCPFRYEIKRKNLNSGVKLVMLLDPSNFYVTNLDVITDPYFGNDEIVAKLVQHLAGTGRTVIMDSWFTSNSILQRLLTEYKLFSIGAIGPSNELVPPLFLTKYRIKKIFMNGFLDDDTCLTSYVNENSKVVNIVANDPKYYKRTHSSHTSSVSLYKKYQSAIEVIDVLMHYYTTMQHTNDWTLSLFFMLLNIASVNAQVIWASDNTNTIVQRRIFIRELAISLTENDQPVPSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLRPSELAEHKNTHLRVKFYPCSICTNSYSTPLKLSEHVQQVHPGAGKTQADTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGENKGFAPQIIGKPIRQFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLADRNDSEENTMQASTEEDEYNIDENGAILSTPQFNSFNFTNFSNNMQQTTQDALPYSCELCYKKFPLRTSLWKHKRAKHGINATAGTAETQIQPSNEGTRSSCTICKITFTDKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNSNHSSSKSQDISQDMDVEDDGDQDSVDPSIDYQARYPCDTCGKQFVGLLALQNHQCINQIQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVDMVQNTRSSTSANLAKRRLPPEVEVTVVNPNKKLRSDDSIDLDHQNSYSGGPEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSGTQVDEDVHACEVCGAQFDTVKDLNTHHAMEHGDEVDDTGESEDDGGAVAPPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -