Hros010027.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- Prdm15
- Assembly
- GCA_963989215.1
- Location
- OZ022314.1:966455-969925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.3 5.3e+02 1.5 0.1 3 23 239 259 237 259 0.91 2 14 0.26 22 5.8 4.4 3 23 268 289 266 289 0.92 3 14 0.0013 0.11 13.1 1.0 3 23 429 449 427 449 0.97 4 14 0.016 1.3 9.7 1.3 1 20 453 472 453 474 0.95 5 14 0.0011 0.091 13.3 2.3 1 23 482 504 482 504 0.98 6 14 1.3 1.1e+02 3.6 3.9 3 19 510 526 509 529 0.88 7 14 0.0046 0.38 11.4 7.4 1 23 533 555 533 555 0.93 8 14 7.9e-06 0.00066 20.1 0.6 3 23 579 599 577 599 0.97 9 14 0.68 57 4.5 3.4 1 23 604 626 604 626 0.96 10 14 0.001 0.084 13.4 0.1 2 23 632 653 631 653 0.96 11 14 0.002 0.17 12.5 8.8 1 23 658 681 658 681 0.97 12 14 3.4e-05 0.0028 18.1 2.3 1 23 687 709 687 709 0.95 13 14 0.0016 0.13 12.8 3.0 1 23 715 738 715 738 0.95 14 14 0.16 14 6.5 6.1 1 23 743 766 743 766 0.95
Sequence Information
- Coding Sequence
- ATGATGTTAGCTAACGTCCCTTCACAGCCGGATAACGTAATGCAATATGCATCAGTGTGTAATATCTGTGGGGAAAATCATGACACAAGTGATTGTTCTTTCTTATTTAAACAGCATTATATTTCTGACACAGCAATTGTGTCACGAGCCAGGCAGACTCTTCCCAAAGAATTGGAGATCATTAGTATGGCAGATGGTACAACCACCATAATCACAAAAATTGAACTCCAAAGAGGAACAACATTTGGTCCTTTATGCGCTAAGAGAATCTCTACAATGAATCCTCTGACAAACTTTCCCATCAAAGTGTTTGGAACTACATTGTCGGAAACATATTATTTGGATTGCACAAATGAGCATACTTCCAACTGGATGTGTTTTGTACCACCTGCATCAAATGCCAAAGAACAGAATCTAATATGTTATCAAGTAAATCAAAGCATATTATATACCACGACACGTGCAATCTGTGTTGATGAGGAATTGAAAGTTTGGTATGCTCCATATTATGCACTGAAGATGAAAATGCCACTGTATGATATGAATTACCCAACTGTTGATGTTAGTTTCCCACAGTTGGGGCATCAACAGATGGTCAAAATCAAGAACAATAAAGATGAAATGGGATTATTTAGTAAAGATATTGCACATGAGGTAGCAGAAAACTTACCAGCTGAGCATCTGggtgttaaaaataataaagaatccTGGAACTGCAAGTTATGTTCAATAGAAGTGCAGTCTGTAGTTTCATATGCAAAACATTTAATGGAACACTATAAACCGTTGGTGGGGGTATGTTGCGATATTtgcaacaaaaaatgtaataatattactgTCCTAGAACGACATAAAAAAGCAAAACATTCGCAAAATGTGTCCAACAATAACGTAGAAAAAAGCGTAACCGCAAGTCAACAATTCAATTCCGAGACCGTATTTTTACATCTAAGCGATTCCGAAAATGTGGCACCTGATACTTTGAAAGATTTATTGCATAAAGTTGGCAAACCACCACCCAGCAGTGATGTCCAAATTAATCAAAATGAGAAGGAAATCGGTTCAGATATTCCCTTGCTAGATAACACTTCGATAAACGTTAATGATTTACTCCAGAATAATGGATGTCTGAATATCAGTCTAGAATTAAGTTCTGTCTCAGATTCTATGCTATCTGAAACGTGCGTAGAGCCAGTAAAATTTAGCGTGGAGGAATTAACATCTGATTTGTTGGACATCGTGTCCGAtgtgaataatgaaaatattaaggCCGACAGTTTAGACTGCGATATTTGTACTAAAAGATTCgataaagtattatatttgtatAGGCATTTAAGAAAACACACTGGAGAATTTACGTGCCCATCCTGTTTAAGCgtattcgcacgaaaagagaATTTGCTCAATCACACATGCTTTATGCAAAAAATGGGCAACTCGTACGAGTGTTCTATTTGTCAGAAATCATTTCTGCTCAAGAAGTATTTCAAGAGACATATAGCCAGACACAACGCCATGAATCACTGTAAACACTGCAAAGCTAGCTTTTCATCACAACTAGAGTATGACACCCATGAATGTGATGTTTCGAATCATGTATGTATACACTGTAAGAAGAGATTTATGCGCAGAGCGCACTTAAACCGTCACATAAAATTGCATGTTCTTACGAAACCTACGGGAGtggaaatgaagaagaagaagaaaaagcctGAAGATAAACCCGTTATTTGCGAAAAGTGTGGCGATGTTTTTAAGAATCGCAGCAGTCTGAAGCAACATTTACGTTCCCATGGTGAGAGAATGTTCGAGTGTGATGTGTGCCACAGCCGATTTCATCGAATTGGAGTCTTGAAAGAGCACAAAACGAGCCACGAAAGTGCACAAGTTCCGTGCAATGTTTGtgggaagaaaatgaaaagcaaAAAAGCTCTAGATATCCACATGCTGGTGCATGGAAATAAAAGATATCACTGCGAAAAATGTGACAAAAGTTTTTTCCAGAAATGCAATTACTTGAAGCATTACAGACAAATGCACACCGAAAAAGAGAGTCATAATTGCCCTTACTGCCCGACACAGTTTACAAACCAGTCGAGTTTCAACAAACACGTTGCTTACCATAATAAGCCTCGACAATTCCCTTGCACGTTGTGTTCTAAAGCTTTTCACAAAgaatttcaattaaaacgtcATGTGCAGAATAGTCACAGTGGGATAATCTACCGATGTCCTTTTTGCTCAATGACCGCTCGTCATAAGCATAGCATGCGAAGACACTTTGAGCGGCAGCACAATGATTTGAAAGACAGATGGAACATAGCGGATTTTGTTAATCAACTTGCTGAGAAGTCCGATGTGATCTCTATTGAGACCGTCAGCTCTGAGCTAAATACGGAAACCCATCCAATTTCTCCCACAGAAGGCACTTCACGATCTGTGAAAGACATAGATGGGGATGAACCAATGAAACAATCCCAATCAGCGTTTCCAGATTCTCTGAGCAAAGACCCGGAAATGCTAGATGTAGATCTAACATTACACGAAGTACCCCAACTCAGCATAAATGAGACAGATAATCCTTTGGCAGAATCTGTTTTACGGAATACGTACATTTTCGACGAAGGCGGTGGAGATATAATGTTTTACGTGTTGGACAGTACCCCTGTCAGCACTGAATATTAG
- Protein Sequence
- MMLANVPSQPDNVMQYASVCNICGENHDTSDCSFLFKQHYISDTAIVSRARQTLPKELEIISMADGTTTIITKIELQRGTTFGPLCAKRISTMNPLTNFPIKVFGTTLSETYYLDCTNEHTSNWMCFVPPASNAKEQNLICYQVNQSILYTTTRAICVDEELKVWYAPYYALKMKMPLYDMNYPTVDVSFPQLGHQQMVKIKNNKDEMGLFSKDIAHEVAENLPAEHLGVKNNKESWNCKLCSIEVQSVVSYAKHLMEHYKPLVGVCCDICNKKCNNITVLERHKKAKHSQNVSNNNVEKSVTASQQFNSETVFLHLSDSENVAPDTLKDLLHKVGKPPPSSDVQINQNEKEIGSDIPLLDNTSINVNDLLQNNGCLNISLELSSVSDSMLSETCVEPVKFSVEELTSDLLDIVSDVNNENIKADSLDCDICTKRFDKVLYLYRHLRKHTGEFTCPSCLSVFARKENLLNHTCFMQKMGNSYECSICQKSFLLKKYFKRHIARHNAMNHCKHCKASFSSQLEYDTHECDVSNHVCIHCKKRFMRRAHLNRHIKLHVLTKPTGVEMKKKKKKPEDKPVICEKCGDVFKNRSSLKQHLRSHGERMFECDVCHSRFHRIGVLKEHKTSHESAQVPCNVCGKKMKSKKALDIHMLVHGNKRYHCEKCDKSFFQKCNYLKHYRQMHTEKESHNCPYCPTQFTNQSSFNKHVAYHNKPRQFPCTLCSKAFHKEFQLKRHVQNSHSGIIYRCPFCSMTARHKHSMRRHFERQHNDLKDRWNIADFVNQLAEKSDVISIETVSSELNTETHPISPTEGTSRSVKDIDGDEPMKQSQSAFPDSLSKDPEMLDVDLTLHEVPQLSINETDNPLAESVLRNTYIFDEGGGDIMFYVLDSTPVSTEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -