Hros002188.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022306.1:2309959-2315950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.2 3.6e+02 2.0 0.6 2 20 139 157 138 159 0.86 2 22 0.16 13 6.5 6.5 1 23 200 223 200 223 0.96 3 22 0.0046 0.39 11.3 0.5 1 23 516 539 516 539 0.95 4 22 2.2 1.9e+02 2.9 0.7 5 23 546 565 545 565 0.94 5 22 0.0043 0.36 11.4 1.0 2 23 572 593 572 593 0.95 6 22 0.45 38 5.1 2.0 2 20 621 639 620 641 0.92 7 22 0.026 2.2 9.0 0.5 1 22 764 785 764 785 0.93 8 22 0.0013 0.11 13.0 0.2 3 23 794 815 793 815 0.98 9 22 0.0047 0.39 11.3 1.9 1 23 824 847 824 847 0.95 10 22 2.1 1.8e+02 3.0 0.1 2 19 865 882 864 884 0.84 11 22 0.05 4.2 8.1 2.6 1 23 892 915 892 915 0.92 12 22 0.0022 0.18 12.4 5.0 1 22 926 947 926 949 0.90 13 22 0.014 1.2 9.9 0.2 1 19 991 1009 991 1011 0.95 14 22 3.5 3e+02 2.3 1.8 1 21 1019 1039 1019 1042 0.88 15 22 0.31 26 5.6 0.2 1 23 1051 1074 1051 1074 0.95 16 22 1.1 96 3.8 0.1 2 20 1093 1111 1092 1112 0.94 17 22 0.032 2.7 8.7 7.5 1 23 1120 1142 1120 1142 0.97 18 22 0.00048 0.041 14.4 0.3 2 20 1301 1319 1301 1321 0.94 19 22 0.00092 0.078 13.5 2.0 1 23 1328 1350 1328 1350 0.98 20 22 0.031 2.6 8.8 0.8 3 23 1362 1383 1360 1383 0.90 21 22 0.0029 0.24 12.0 0.9 1 23 1497 1520 1497 1520 0.97 22 22 0.0061 0.51 11.0 0.2 3 23 1552 1573 1552 1573 0.97
Sequence Information
- Coding Sequence
- ATGGCTCGAATGTTACTGTACGAAAGGCCTGTCGATGTCATCGATGGAGGTCCATCCGAGTGCACTCCTTCTTGGTCTGGATCATTATTCAAGATTAAGGAAGAACCAAATAATGATGATGAAGCAGCGAATCTGTTTTCCgataatagtaatagtttAGTTTCGACAAAAAACAGTAGCGCGAGCTTAAATGTCGGTGATAGTACATCTGATACAGTTATTAATAGGAATAAAGCGAAAAGgcaaaatgtgttaaaaagaaaacgttcTCGATTTGTTGAAAATGAGAGACAGTTTTTTCGCTGTAATACACGATCAAATAATCGTAAACGTAAGAAAGGTGTTCTCGGTAATAAAACTACTCGATTAAAAGTTCCGACCAATACAAAATCACAAACCGTGTGTCCGAAAGTTAAGTGTGAGGTGTGCTTTCTAAAGTTTAGTTCGGTTTCAAGGGTAAAGGGTCATTATCAACATTATGACACCAGCACGGAAGTTTCGTGTGATACTTGTAATTTGCATATGCGTTCGCAAAAGTTAGCAGCTATCCATTTTAGATCAACCCATTCTGCCAAAAAATTTGGCAAAAGGTATCACTATGAATGCCACTTTTGTACACAGCAATTTTGTTTGAAGCCCACATTACAAGCCCACATATTACACTTTCACAATGACAaaatatgtagaaaaaataaagcatCATCGCAAAAAACTCAAAACTTAAAACTGCACTTTTCTGTGCAATCGCCAACCGTCAAACCATCATCAGAAGTATTAGAGTCTGAAATAACTAAGGATGAACAAAAAAACAGGAGTTCCTCCTCATCTCCCTTGAAGAATAGTCCTAGTCCCAAAAAATTGCGTCAAACTACATTAACGGAATTTATGTGCGTTAATAACGTAGAGCATAAAAAGGAACCTATCAGCCCAAGTAAAATTAAAGAGGATGCAATTGAGGAAGAGCAACCGCCTTCAATCGACATATGTAAAGCGAATCATACTCCAAGCACTGACCTAAACAAGAAACCTTTTGTACAAATACATTTACCCCTTACGGAATATTCACCAGCATCAAGTGGTCGTTTCGGTTCAAAAGAGATAAAGTATCGCAAAACATCGCGGCAGACACGTAGTTCTCTTGAAGACAGAATGGTACGACGTTCATTGAGGCTTAGCACCTCTGACTATGCTAATGAACCACAAGGAAATctggaaagaagaagacgaaggatCAAAAGGGTTCTAAGATCTTTGTATCCTACAAATACTGACTCTGTACTCagagaaaaatacaaatgtaaGGCTTGTTGTGTGCGTTTAGTCAGATGCGATAGTGAAAGGAATCATGTTATGAAGTCCAATAGTGCAGCGGTCTCACCTAAACCTCCAAACACGCCGTTCAGTGCACCCAGGCTTTCAAAAGACGGTAACTTGATATTTAAAGAGGTTGCAGTTTGTTTAGAAAAGTTGCCTGTTACATTAGTGGAAAGTAAATTAAATGATCCAGAGCCTGAAGAAAGCGCAGAGACATCTATTACGAGAAGTTTTACTTGTAAGGCGTGCGATGAAGAATTTTCATCTAAAGAAGACAGGAAGCAGCATGTTAAGGAGGCGCATACGGCTTACATGTCAAGTATATGTAATGCCCGTTACAGTCTTAAACATAAACTGATTGAACATTATTTGCGACAACATTACCTTTTCAAGCGTAACGAGTGTTGTGTTTGTGGAGAACCATGTTCTGATCGGATAGCCTTAAGACGTCATCTTATATTGCATTGCATTAAAGTCGTACAATCAAAGGAAGACACGTCACCATTAAACATCGATGTAATTTGTAAATCTTATCAGAAGACCAACAAGTGTGCGACATGCGGTAAGAGTTTTTGGTTACTGTCATGTTTGAAACAACACCAAGCGCACTGTCGGATGCGAAAGGTGAATGGTAACGGTAACAGCAAGAGTGATAACCGTGAGAAGAAGACCAAATTTCCAATAATAAAACTAATTGAGACTGATAACAATCATGCGGTTACGTCCCCAGAGTCCGCCGAATCTCAGACCAGTTTATCTACAAGTCAGCAACATCCAGTATCTAGTACACATCTAAAAGATAAACACGTAGTGTCCGCAAATAATCCACAAAACGATGTCCAAAACATGGACCCTAACACGCTTGTACCTCCAACATGTCATTCGGACCAGCCGGTAGACCTAGCACCTCCCATTGGATCACAGTTGACTCCGATATGTACAGGTCCTACTAAAGAGAGTGTTATTAAACCAAAATACTCTTGTGATATTTGTGGgaagaaatatcatttatacCAGAGTTTACTAGGTCATCTCCGTATGTACACAAAGCTGACCAGTGCGCTCTGTGAAGTATGTGGGACAGTTTTTGGTTCAACAAGATTATTACAAGTTCACTACAATACGACGCATACGCCTCTTTCGTGTTCGTACAAATATCATTGTAACGTTTGCTATCAAGGATTTGCGAGGAAGGATCCGCTTCGAGTTCATCAGTTACATGTACACCCACAACTACTGCCACTCCCTGACGTTAACCGCCTACGGCAAGTCACCTCTATGTGTAACGTGTGCAATCTAGTATTTGAAAACTATAATCGTTTTGTGGAACACAACATGTACTACTGTAAGAATCAAGTGTTTTCCTGTGCGTTTTGTGGGAAGGTGTTTGAAGGAATGTATCTGTTACATCACCATAACAAATTGGACCACTATCCGGAATACGCAAGGACTGCCTACAATTACACGTGTGATACTTGTGGGGAAGGGTTTAAACATCAATCCCACTTTTATGCCCATAAGGTACATGTACATTTGATGAACCCGATTTCAACAGAGGAACTCAGTAGGCAACCTTCTGATGCTAGATTGCTGAACACAATCGAGGGGTCTAATTGTGATAAGTTAGAAGTGATGCCGAATTCAGAGAAAACACTATACACTTGCAAAATTTGTAACGCGCAGTTTAACAGCTCCATTGCATTGAGGTACCATGAATCAGAATTTGCAGACAATGGATTTTTCAATTGTGAACAGTGTCCCAGAAAGTGTTGGACATTAGTTTTGTTGAGTAAACATCAAGTTTTTAGTCATGGCGCTTACGAACGCGACAGGAAATATGTGTGTCGTACTTGCAATGAAGTACTTATGTCAGAAGACGCTTTAGCATCTCACGAAAAACACTTACATAACCAGTCGAATGCTCAGACAATTGATAATAGTAGCACTATGACtattgttaataaatgtgGCATATGTGCACTGGACTTTCCAACTTGTGTTGAATTGATGAATCATGTTGATGAATATGCCAATACAGGGGACCATGTTTGTGAACAATGTCATCAAAAGTTCAGGGAACTTCAACACCTTCGTAACCATAAAGAAACACATACCAGACTCAATTCAAGTTCCACTAGATACCAATGTTCCCTTTGTAACCAACAGCTGTTGTCAGCAGTTGATGTCCATGCtcatattattcatttacatacactGACGTCAGGTTTCCAGAATGTTTTGACTAAGAAAACAACGAGGACCCAACTCaacgaaaatatacaaaacgATCATAACTACGGTGTAACACACTCCCAGCTTCTCGTTCAGGCAGACAACAATTTAGCTGAAGTTATTCAATCACCAATTGTAAGCGCAGGAGCTAAGATAGACCAAGTGGACAATACTGTGTCAACGTCAAATGTAACGAACCCAGCACTCCGGGTAGAAGTGAGGGAAATGGTTGTTGAAAATGTTACTGCTAACCCATTGTCAAAACTGAAGGTCAACCCCCGTCCTGAAAATAAGTTGACAATTATACCTGCGCCGAAACCTAACGTCAGTGAACCAGGCAATGACAAAGCTGCAAAATGCAATGTTTGTAACTTAAAATTTGCTAGCAAGAAAAATCTGATTAGGCACTGGGTGAGGTTTGTAAATAAAGGTAACTATGTTTGTGAATTTTGCGGAAAAGTGTTTCCCTGGGAATCGTGCTTCAAGGATCATCAACGTAAACACCTCGAAACCGTCGGGATAACATTGAAATATGGTTGTGACATTTGTGGGGAGAAATTTCGAACTGCAGCATCGGCGCACGCACATGTTACGCATTACCACAATAAATGTGAAAGCCCATTTGTTGAATTCCTAGAAGTTGATAAAAGAACCTTGGATCAGCAAGTGGATCAAGTGTATTTTCAAACTGAAAGTGGCGAAGTACAGATTGCCGTAATCCAAAGTGATGGAACAATTGAAGATATTGATGGTTTTACTAATCAAACAGATACTTATGAGATTGAAATTTTGGATGAGGAGCCAGATCAGTCTAATGGTGTGCCCACTGCTAACGAGAAGCCTCAGAGTGAAGCCTCCGTTGGGGGAGCTCCCAAACCAACCCATGATGTGATACACAACGAACAACAGGAAGATTATGATAATACTGCCCAGTTAGATAAATATACTTGCCCAGTATGTTTACGGACTTACGAAAATCTGGTAGATTTTCAAACTCATTTCCGAAGTACACATCCAAAGCAGTTATTAAAGTACCCAAATTACCGAGCTTCCGAAAACGGAAAGGGCAATGTCCCGTTCACCGACCAACAAGGCAGCAATATTGGTTGCGTTGTTTGCAATGCTGTTTTTAGCAACGAGATAAGctttaaaaaacatttgaatagCATACATATGCCTCGATCAGTTACGTCGAATAATAGGAAGAAACGACATATACggataattagaaaaattcttgTTTCCCCACACCAGCGTGCACCTCAAGCTGCTTCGAAGGTATCTGAATCGAACAATGACAAGCAATCGAAGGTAGAAAATAATACATCATCGAATAGTACACACTTGAAGAAGAATCATGTCTCTGTGAATGCTGGGATATCTAAAgatgaaaatcaaagaaatactCAAGAGACTGTTCGAGGCGATCAGGTAACAACTGTTGGAGCTAACGTGATTGATAAACCAGAGATTACAAAACCTCAGAACAGCAACGTAGgcaaattaaaagtaaaagattttgcaaaattaatcCAAGTGGAAAATCAGCCAACACGCACTTTGAAAAACAATGCAGTTCCTACGACACCAAAGTACGTCTTACTGCAGGCAGATATTCCAGCTAATTCATTTTTAGGGGCGTATGTGGACAGCCTATGCAATAGTGGCAACAAAAAGTTATGA
- Protein Sequence
- MARMLLYERPVDVIDGGPSECTPSWSGSLFKIKEEPNNDDEAANLFSDNSNSLVSTKNSSASLNVGDSTSDTVINRNKAKRQNVLKRKRSRFVENERQFFRCNTRSNNRKRKKGVLGNKTTRLKVPTNTKSQTVCPKVKCEVCFLKFSSVSRVKGHYQHYDTSTEVSCDTCNLHMRSQKLAAIHFRSTHSAKKFGKRYHYECHFCTQQFCLKPTLQAHILHFHNDKICRKNKASSQKTQNLKLHFSVQSPTVKPSSEVLESEITKDEQKNRSSSSSPLKNSPSPKKLRQTTLTEFMCVNNVEHKKEPISPSKIKEDAIEEEQPPSIDICKANHTPSTDLNKKPFVQIHLPLTEYSPASSGRFGSKEIKYRKTSRQTRSSLEDRMVRRSLRLSTSDYANEPQGNLERRRRRIKRVLRSLYPTNTDSVLREKYKCKACCVRLVRCDSERNHVMKSNSAAVSPKPPNTPFSAPRLSKDGNLIFKEVAVCLEKLPVTLVESKLNDPEPEESAETSITRSFTCKACDEEFSSKEDRKQHVKEAHTAYMSSICNARYSLKHKLIEHYLRQHYLFKRNECCVCGEPCSDRIALRRHLILHCIKVVQSKEDTSPLNIDVICKSYQKTNKCATCGKSFWLLSCLKQHQAHCRMRKVNGNGNSKSDNREKKTKFPIIKLIETDNNHAVTSPESAESQTSLSTSQQHPVSSTHLKDKHVVSANNPQNDVQNMDPNTLVPPTCHSDQPVDLAPPIGSQLTPICTGPTKESVIKPKYSCDICGKKYHLYQSLLGHLRMYTKLTSALCEVCGTVFGSTRLLQVHYNTTHTPLSCSYKYHCNVCYQGFARKDPLRVHQLHVHPQLLPLPDVNRLRQVTSMCNVCNLVFENYNRFVEHNMYYCKNQVFSCAFCGKVFEGMYLLHHHNKLDHYPEYARTAYNYTCDTCGEGFKHQSHFYAHKVHVHLMNPISTEELSRQPSDARLLNTIEGSNCDKLEVMPNSEKTLYTCKICNAQFNSSIALRYHESEFADNGFFNCEQCPRKCWTLVLLSKHQVFSHGAYERDRKYVCRTCNEVLMSEDALASHEKHLHNQSNAQTIDNSSTMTIVNKCGICALDFPTCVELMNHVDEYANTGDHVCEQCHQKFRELQHLRNHKETHTRLNSSSTRYQCSLCNQQLLSAVDVHAHIIHLHTLTSGFQNVLTKKTTRTQLNENIQNDHNYGVTHSQLLVQADNNLAEVIQSPIVSAGAKIDQVDNTVSTSNVTNPALRVEVREMVVENVTANPLSKLKVNPRPENKLTIIPAPKPNVSEPGNDKAAKCNVCNLKFASKKNLIRHWVRFVNKGNYVCEFCGKVFPWESCFKDHQRKHLETVGITLKYGCDICGEKFRTAASAHAHVTHYHNKCESPFVEFLEVDKRTLDQQVDQVYFQTESGEVQIAVIQSDGTIEDIDGFTNQTDTYEIEILDEEPDQSNGVPTANEKPQSEASVGGAPKPTHDVIHNEQQEDYDNTAQLDKYTCPVCLRTYENLVDFQTHFRSTHPKQLLKYPNYRASENGKGNVPFTDQQGSNIGCVVCNAVFSNEISFKKHLNSIHMPRSVTSNNRKKRHIRIIRKILVSPHQRAPQAASKVSESNNDKQSKVENNTSSNSTHLKKNHVSVNAGISKDENQRNTQETVRGDQVTTVGANVIDKPEITKPQNSNVGKLKVKDFAKLIQVENQPTRTLKNNAVPTTPKYVLLQADIPANSFLGAYVDSLCNSGNKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -