Hros009420.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- ZFX
- Assembly
- GCA_963989215.1
- Location
- OZ022313.1:5140719-5145139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6 1.4e+02 3.3 0.1 3 23 16 36 15 36 0.94 2 15 3.2 2.7e+02 2.4 3.8 1 23 902 925 902 925 0.81 3 15 0.0019 0.16 12.6 2.0 3 23 1015 1036 1014 1036 0.97 4 15 0.0089 0.75 10.4 0.1 2 23 1049 1070 1049 1070 0.98 5 15 1.8e-05 0.0015 18.9 2.3 2 23 1073 1094 1072 1094 0.97 6 15 0.012 1 10.0 0.3 1 23 1100 1122 1100 1122 0.95 7 15 2.5e-05 0.0021 18.5 4.5 2 23 1129 1150 1128 1151 0.95 8 15 0.052 4.4 8.0 2.8 5 23 1164 1182 1161 1182 0.96 9 15 2.2e-05 0.0019 18.6 1.5 3 23 1189 1210 1188 1210 0.97 10 15 0.01 0.85 10.3 0.3 2 23 1226 1246 1225 1246 0.97 11 15 6.7e-05 0.0056 17.1 0.7 1 20 1252 1271 1252 1274 0.92 12 15 8.3e-05 0.007 16.8 2.7 1 23 1282 1304 1282 1304 0.99 13 15 0.0023 0.2 12.3 3.2 1 23 1310 1332 1310 1332 0.97 14 15 4.2e-06 0.00035 20.9 3.9 1 23 1338 1360 1338 1360 0.99 15 15 0.0015 0.12 12.9 6.3 1 23 1366 1388 1366 1389 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCAACAGTGGTACAGGACTAGGGAGTGGGGCTGTGGCCTGCCCAGTATGCACACTTTATTTACGTGAGGGTATCAGTCTGCAAAAGCATCTTGATACTCATCCTAAGGAACAGGTGATTGAGGCCCTTATAAAGGCTAGTGGTTCGTTGCCACAAACGTCACAAACTTCAGGTCCTCCACCTCCACCAGCGTTATCGACGACAATACCGCCATCGCCTCCCTCGCTACAGTCATCTCAACAGGCTTCACAAATTACACAAAGTGCTCAGGTCACTTCTCAGTCACCATATCCCATCGGCCCTATTTTCGAATGTCCGCCTATCGGCACCGCTATGATGCCACCTCAGTTTGCTTCCTTTAGTTATCAgcaatttgttaataatgGGACCATGATGATACCCCAATATGCCATGGCACCACCACAGGCCAATCAAATGCTTCAGATGCTGTACAATCCGTATAGTGTATACCAACAGCAACAAATACCTACCGTTCAGATGCTGTCTCCTGTTACGACTATTCCTACAACAAGTAGACTGCAGAGGCCAATGGTTTCTGTTGCCGGTAGTGACTCGAGTAACAGAGCTGCCCTCTTTTCGGTTAGCGAATCCGAGCCCAAACAAATTTTGCCTGAAATCGTGTCAGAACCCGAAACTGAGTCTGATAGGGTCGAATCAACTATAGCTCCTGCTTCGCCTACGTCAATGCCTTCTACCGAGGATATTTCCTCGAGTGAACATGATGGACCTGAAGGGGATACTCCCGAGCAAATTGAATACCAAGGGCAAACAAGAAATTCCCCGTCAATCGAAACACCGACTATTCGACCAGTAGACACCACGAAAATCTCAGATTCGTTGATTACTGACGTGACTTGCGTTGAGGAGGATCACGCTGAGAGTGTATTACCGGATATTGAAGAATCGTCGCGACCACCATCACCGCCACCCTCACCATTGTCCAATAACCCAGTCAAATCCACTGATCACTATGAACGTCAATCGGAATGTCCGAAATACGTAGAAGTATATGAAGGTGGAAGAAGGGATATATCAAAAGAGTTTGAAGAAAACCAAGGAGAAAGGATAGACGAAACTGACGAGAATGTTAAAGAGATGGATGTAACGACGTCAATTGAGTGCAAAACCCCATCCGATGACAGTACAAAGAATTCCAATCGACCGGAGGTGGAACAATTAGAACATTTTCTGGTGACGATAATGGAGGCGGAATTTGCCGACCAACGGAAAGTCTGGAAGGATGACAAGGATATTAAAAACAGATCTACATCACATAGAGAAGAAAGTGTTATTCGTGATTGTGTTCctcatgaaaattgtacactGCAAGCCTCTGAAGTGACAGTTAACGATGTGCCGAAAGTTTCTGGAATGGACAGCGAATTACAATGTTGCGATGTTAACTTTGATCGACTTTACCGTTACAAGCACAGTATGTCCGCTCCAACTTCGCCAGTTACGCATAAACCAACTTTGCGAACATTTTCCGTTCACTCCGAATTTGGGTCAAACGATGATCTCGGTGCTTACGTCGATGGATTCGATGGAATGATAATCGTACAAGATGAGGAGGAGGACATCGAGAAACACGAGAATTTTGATGAAATCGATATGGAAGTCGAAGAAATCGCTAGTCCACATACGCCTTCTCTCAAGTACGGAGAAAGCGCGAGCAATCACGTAAGATCACACACGCCGCTTTCTGCGATTAGTGGAATTTCTGTGTTGAGGGTGCGGAATGACCTCAGCAAGCCATCATCTCCAGCTTCAACTCACTCCCTTTGTCAGGTAGATTGTAGCACTGAACTGATTTGCTCTATGGAAGACAGTAACGATGCAGTGGATGCGACAATAGAAAAAGATCCTATCGATTGCGACCAAACGCAAGAACAGGAAACGAACTTCAATCATCATCCTGACACACAGGTGGTCACTGACGATCTCGAGGAAAAATCCGAGTCTACCCACGCTTATCACGAGTCCGTTATCACTGGCCACGTTACTTCTTTCCCTGTACTTCATTCACAGCAGCAATACCAATCATATCAACAGCAGCAACCACAACAACAGCCTGCTGTAGCCCACGAAAATGACCCGGTGCCAAGTAACAAGACGCTTTTAAATCTATCCGAACCTGTCGATTCTACAACGGACATAGgatcgaaaaatttcacgtcCGGCAAGTCGATTGCTCAACAAAAACAGTCGAtggaaattttgaatataagCGAAGACGCTCATGCTGGCCCAATGAATGTCCTCGAGTTCGACGGTCTACAAATTTTAGTTCCTAGTACGTTTATAAGTGAATCTTCACAGAAGGCAGTTAGTGCCTCCAGTCAACAATCCGCAGCGAGTAGCGAGAGTGTGGGTATCGATGAAGAGGTCAAAAGCATTAATATGCGAGCCGATGAGACTATGCCGCCAAGGGGTGAATTATCGGAACAAGAAAGTAATGGATGTACCGAACAATCCGCGTGGCAGCTTTACATGGGCCAACAAGAATCTTCACGAATGTCCACATCGTACGACCTCATGGCTCGTGAAAGTTGGGAGGAATCGGAGGGATCGGACAATGAAATTGGGGGACCTCTATTAGATAGTCGATCGTTAGCTACCCACTTCACTTCTAGCCTATTTTTAGATAGAGATAGAAAAACACCGACGAAACGGACGTTCAAGTGTTCACATTGTTCCGAAGTCTTTGACTGTCCGAAAGAACGACGCGTTCACAGCACCACTGTACACAAAGAAGCCGGACCAAGTGGTAGCGGGGATCGGATAGATCAACCGGAAGTTAAAGATATCAAGTTACTGGATGGCCGTATGAATGTGTTCGAGGACATTTTTGTGCCAGGCTTGCATCATGTTCAACAGGTCtatcagcagcaacaacaatcACAACCCCTTTTACACCAACTTCAACCTCCAGCAGCGACTGCGCCGCATCTCGGTAAAATCGAGACCGATGGGAAAATGGACGATTTGACCATGCCCTCGAGCATAGAAGTGGCCTGTATGATATGCAATCAGAGATTCGCTACTGAAAAGTCTCTTCAGCTACACCATAGGCGAATGCACGTTACCGACGTTCCTAAGCGCATTCGAGAAAGCGCGAAATGTCAGGTCTGCAACGAGGAGTTCCCCTCAGTTATTTTATTCAATGCTCATTTGAAAATCCACCCGCTTGAGTGCGGACAGTGCGGCAAGTACTTTTATAGGAAACAAAATTTCAAGTTGCACATGAAGAGACACCTAGGCATCAAGCCTTTCCCGTGTACCGTCTGTGACAAGGCATTTCTTACGAAGCAGAAACTCGACGAGCACACGAACGGTCATACTGGGAATGCCCCCGTCAAGTGTAATCTATGCAACGAAACTTTCCGTAGATATTCAAATTTGACGCAGCACAAAAACAGGCATCACTTGAATATTAAGAAGAAGCTCAAAGACTACGTGTGTCATTGTGGCGAAGTTTTTCATACGAAGAAAAAGCTAGCTTGGCACAAGGAGACACATGACGAGAAGCCAAAGGCGTGCACCTACTGCAACGAGAGGTTCATTCACATGGCGAGTCTCACACGACACATGCGACGGGCGCACAATCGGAGATTTGTGCCCGATGCCCAgcgagaaaacgaaaacgTCGAGTGCCCGATCTGCAAATGTATCTACTTACGTTCTTCTCTAGCCGTGCATATGCGAGTGCACAACGGCGAAAGACCGTACGAATGTCAAGTCTGCTCGAAAGCGTTTAGCACCAAGTGGAATCTACAGTTGCACAAGTGGACTCATGCCGCGCGCAGCACCAAGCCCTTCAAGTGCAATCAGTGCAGTGCCGCCTTCTATCGACACAGTGATTATACGGCTCATATGAACTCTCATCGAAACGTAAGGCCTTATACGTGCAATTACTGCGGTGCCCAATTTATAAGGAAGTACAATTGCCTGAGGCACGTCAAGGAACATGAGGAGAATAAGGCATACACCTGTGACGTTTGCAACAAGACTTTCCACAGGTCTTACTACCTTAAGGAACACTTGCGAGTGCATTCGGGGGCGAGACCGTACACTTGCCATATTTGTGGCAAGTCTAGCGGTACGAAATCGAATCACAATAAACACGTTAGAATTCACCATGCTCGAGAACCCGTTAACAcggaaaattaa
- Protein Sequence
- MDLNSGTGLGSGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIKASGSLPQTSQTSGPPPPPALSTTIPPSPPSLQSSQQASQITQSAQVTSQSPYPIGPIFECPPIGTAMMPPQFASFSYQQFVNNGTMMIPQYAMAPPQANQMLQMLYNPYSVYQQQQIPTVQMLSPVTTIPTTSRLQRPMVSVAGSDSSNRAALFSVSESEPKQILPEIVSEPETESDRVESTIAPASPTSMPSTEDISSSEHDGPEGDTPEQIEYQGQTRNSPSIETPTIRPVDTTKISDSLITDVTCVEEDHAESVLPDIEESSRPPSPPPSPLSNNPVKSTDHYERQSECPKYVEVYEGGRRDISKEFEENQGERIDETDENVKEMDVTTSIECKTPSDDSTKNSNRPEVEQLEHFLVTIMEAEFADQRKVWKDDKDIKNRSTSHREESVIRDCVPHENCTLQASEVTVNDVPKVSGMDSELQCCDVNFDRLYRYKHSMSAPTSPVTHKPTLRTFSVHSEFGSNDDLGAYVDGFDGMIIVQDEEEDIEKHENFDEIDMEVEEIASPHTPSLKYGESASNHVRSHTPLSAISGISVLRVRNDLSKPSSPASTHSLCQVDCSTELICSMEDSNDAVDATIEKDPIDCDQTQEQETNFNHHPDTQVVTDDLEEKSESTHAYHESVITGHVTSFPVLHSQQQYQSYQQQQPQQQPAVAHENDPVPSNKTLLNLSEPVDSTTDIGSKNFTSGKSIAQQKQSMEILNISEDAHAGPMNVLEFDGLQILVPSTFISESSQKAVSASSQQSAASSESVGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYMGQQESSRMSTSYDLMARESWEESEGSDNEIGGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSHCSEVFDCPKERRVHSTTVHKEAGPSGSGDRIDQPEVKDIKLLDGRMNVFEDIFVPGLHHVQQVYQQQQQSQPLLHQLQPPAATAPHLGKIETDGKMDDLTMPSSIEVACMICNQRFATEKSLQLHHRRMHVTDVPKRIRESAKCQVCNEEFPSVILFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYVCHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRENENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -