Hros014787.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022319.1:5873368-5875881[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.3 4.4e+02 1.7 0.4 1 16 52 67 52 69 0.79 2 16 6.6 5.5e+02 1.4 0.1 2 23 269 290 268 290 0.78 3 16 0.0018 0.15 12.6 1.4 1 23 298 321 298 321 0.92 4 16 0.0019 0.16 12.5 0.8 1 23 327 349 327 349 0.96 5 16 0.079 6.7 7.5 5.3 1 23 433 455 433 455 0.93 6 16 0.0022 0.18 12.4 0.3 1 23 462 485 462 485 0.91 7 16 0.0006 0.05 14.1 3.9 1 23 491 513 491 513 0.97 8 16 0.00015 0.013 16.0 1.9 1 23 519 541 519 541 0.98 9 16 5.1e-06 0.00043 20.7 2.6 1 23 547 569 547 569 0.98 10 16 0.00011 0.009 16.5 0.3 1 23 582 605 582 605 0.96 11 16 0.00021 0.017 15.6 5.5 1 23 621 644 621 644 0.97 12 16 0.01 0.84 10.3 1.3 1 21 652 672 652 675 0.94 13 16 4.2e-05 0.0035 17.8 0.6 1 23 681 703 681 703 0.98 14 16 2.4e-05 0.002 18.5 1.1 1 23 709 731 709 731 0.98 15 16 4e-05 0.0033 17.8 0.6 1 23 737 760 737 760 0.96 16 16 0.0028 0.24 12.0 0.4 1 23 764 786 764 786 0.98
Sequence Information
- Coding Sequence
- ATggatatgccaaaaaatggatTACTCTGTTGTCTATGTGGTGCAGAAGTCATAGCTGAAAACTGTATCCCTATCTTAAGAGATTCCAcagatttaaaaaagaaaataagggaCACATTATCACTTAACATACCCGATGATAGTGATACAAGTCATATCTGCATGATTTGCCATAAGAAGgtgattaatttttacaaattcagGCAAGATATCTTAGCATATCAGAAAGACCTGGACAACACATCTTTATTAAAGAATTGTTTTGACCGGGTTCAAAACATAGAGAGAACTGAAAACTTTTTGAAGAATTACAATGATGCAGTTTACTCATGTCCAAATTGTGATGTAAATCTAATGATTTTGATAGTCAGTAATCCTCAGGGCAGCGAGTACAATTTTCAGATATCATTAGTCCTTGTAGATAGTTATGATGGTCAACCAACTAAAAACAAGCTCGATGATAGTCATACAAATGACAGCAGTCTTGATAATTATAGAATGGATATTGAAGATAAAGCAATAAACCAAGAGCTTGTTGAATCTGTAAAACAGGATGTAGAGCTAACAGGTAAAGAGGAAGTGCAGATAAATCAACAAAGAATAGACCCTGTAAGGGTCTCTGTTGATCCAGCACAGACTTTAAATTTAATAGCTCCAAGTAttgttaattacaattacataCATTTAGATAATGTTATAAAACTTGAACCACCTAATATGAATTGGCTTGATAATACCAATGCAGAAACtgtgaataataaaattgaagaaaatgaggaaaatgatACAGGCAAGACAAAAATTATGTGTGAACTATGTGGTGCTCGATACAtttcattaatgaaatatgaatttcatgTAGAAAGACATAAACTGGGTGACATTGACAAATACAAGTGTCCCCTGTGTGATAAAGAAACAAGCACTGAAAACCTCTTGTGGGATCATTACTTCCACAACCACAAAAGTTCACAAAGATTTGCATGTATGACATGTGGCAAGCTATTTGCAAAGAGATCCAGATTAAGAGGTCATCAAAAGTGGCATAAACACAGTGGTGAGAAAGAAGTACACATTGAAATGAGTAACAATAACACAGATTGTGGGGATGATGGTCAGCCTGTTAGGACAGAAATAGAAGTATTGACATCGGCAAACTGCAATTTCTGTGGTACATTGGTTCATGATTTAAATCCCGAAGCCATTAATGATTTAGTAACTTGTGCTTCTTGCGAGGATACTACTCTCTCCCTGATGGTTGATGGCGACAAGGCAAAACCAATTTTACCGCGGCAATATCACTGTTCTAAATGCCCCAAGCACTTTGTTCGCAAAGAAAGATTAGAATTCCATGAGATGAGgcacaatgaaaatatgaacGAATACGTATGCAGTACGTGCGGTAAAGAATTCCGAGCGGAGAACTCGCTGTACGAACATTACATCTTCGTTCATAAAGGAGCAAGGCCTCACATCTGCGAGCTTTGTGGAAAGTCATTCCAGCTGAAAGCTCGACTCAAGGAGCATCACAGAACTCACACGGGCGAGAGACCCTTTCAATGTGATATCTGCGGTCAGCGCTGTATGACCAGCAATGCCTTAAAACTTCAccgaaaaatacatttttcctaCAACCGATATACgtgtaatatatgtaaaaagAGTTTTAGCAAGAAGCAGAACATGAATGAGCATTTGGAGAAACATTGGAAGACCGATAGGACCGTATCACTGCCACGCGTGTTCACATGCCCCGTTTGTTCGGAGAATTTCCCGACGTATCGTATGTTGAAGTATCACATGATGGAAGTTCACAAAGTCAGTGAACAGGACCCATTGTTAGTCAACCAAAAACCTTGGTACGAATGTAAGCAGTGTCACGAGAAGTTCAAGCATCAAATGTCATTGAAAGcacacagagagaaagaacacGAAGGAAAAACAAGCCCGAGGTATGATTGCAACGAATGTGGTGCTTCATATAGGATTAAGCAGCTCTTGGTGAACCACATAAAATGCAAACATACCACGCTGAAAAGGTACAAGTGTGCACAATGCGAAAAGGGCTTCAACGATAGCAAATCTTTGTACAATCATATTTTGCTTCATACGGGGAAAAAACCTTATGCGTGTGAGTACTGCGGCATGGCCTTCAGAAGGAAAGATTCCAGGGATCAACATCAACGAAAACACACGGGTGAACAACCTTTCCAATGCCCGGATTGTGGAGAAGCCTTCGCCACGTACAACAACCGGGCGAAGCACCGGAAACAAAAACACGGAGAACAGTTCGAGTGCTCCGATTGCGGGGAAAAATGTAACGGAGAGGAGGAGATCAGAGTTCATTTGAATAAACATCTCGGTGAAAAATTAAGGGAATTAGAAAGTGTAAATGAAGAGGAGGAACCAGTTACTGCTTGA
- Protein Sequence
- MDMPKNGLLCCLCGAEVIAENCIPILRDSTDLKKKIRDTLSLNIPDDSDTSHICMICHKKVINFYKFRQDILAYQKDLDNTSLLKNCFDRVQNIERTENFLKNYNDAVYSCPNCDVNLMILIVSNPQGSEYNFQISLVLVDSYDGQPTKNKLDDSHTNDSSLDNYRMDIEDKAINQELVESVKQDVELTGKEEVQINQQRIDPVRVSVDPAQTLNLIAPSIVNYNYIHLDNVIKLEPPNMNWLDNTNAETVNNKIEENEENDTGKTKIMCELCGARYISLMKYEFHVERHKLGDIDKYKCPLCDKETSTENLLWDHYFHNHKSSQRFACMTCGKLFAKRSRLRGHQKWHKHSGEKEVHIEMSNNNTDCGDDGQPVRTEIEVLTSANCNFCGTLVHDLNPEAINDLVTCASCEDTTLSLMVDGDKAKPILPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEYVCSTCGKEFRAENSLYEHYIFVHKGARPHICELCGKSFQLKARLKEHHRTHTGERPFQCDICGQRCMTSNALKLHRKIHFSYNRYTCNICKKSFSKKQNMNEHLEKHWKTDRTVSLPRVFTCPVCSENFPTYRMLKYHMMEVHKVSEQDPLLVNQKPWYECKQCHEKFKHQMSLKAHREKEHEGKTSPRYDCNECGASYRIKQLLVNHIKCKHTTLKRYKCAQCEKGFNDSKSLYNHILLHTGKKPYACEYCGMAFRRKDSRDQHQRKHTGEQPFQCPDCGEAFATYNNRAKHRKQKHGEQFECSDCGEKCNGEEEIRVHLNKHLGEKLRELESVNEEEEPVTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -