Basic Information

Insect: Hedychridium roseum
Gene Symbol: -
Assembly: GCA_963989215.1
Location: OZ022312.1:5706030-5714240[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.26 22 5.9 4.7 1 23 421 443 421 443 0.98

2 19 0.00024 0.02 15.4 1.0 2 19 479 496 478 500 0.90

3 19 0.00013 0.011 16.3 3.6 1 23 506 528 506 528 0.98

4 19 0.00031 0.026 15.1 0.1 3 23 536 557 534 557 0.94

5 19 0.96 80 4.1 1.2 1 23 564 587 564 587 0.97

6 19 5.1e-05 0.0043 17.5 0.2 1 23 591 613 591 613 0.97

7 19 0.0011 0.089 13.4 0.8 1 23 619 641 619 641 0.98

8 19 3.7e-05 0.0031 18.0 2.0 1 23 647 669 647 669 0.97

9 19 0.0026 0.21 12.2 0.1 1 17 674 690 674 691 0.90

10 19 3.5 2.9e+02 2.3 0.5 2 20 1136 1154 1135 1157 0.83

11 19 1.4 1.2e+02 3.5 2.3 1 23 1163 1186 1163 1186 0.98

12 19 0.00022 0.018 15.5 0.1 1 23 1192 1214 1192 1214 0.97

13 19 1 85 4.0 2.1 1 23 1220 1242 1220 1242 0.95

14 19 7.6e-05 0.0064 17.0 0.3 2 23 1249 1270 1248 1270 0.96

15 19 1.3 1.1e+02 3.6 0.1 2 23 1277 1299 1276 1299 0.93

16 19 7.3e-05 0.0061 17.0 1.8 1 23 1303 1325 1303 1325 0.98

17 19 0.026 2.2 9.0 2.0 1 23 1330 1352 1330 1352 0.98

18 19 5.7e-08 4.8e-06 26.8 0.5 1 23 1358 1380 1358 1380 0.98

19 19 0.0027 0.23 12.1 1.1 1 21 1385 1405 1385 1406 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.26	22	5.9	4.7	1	23	421	443	421	443	0.98
2	19	0.00024	0.02	15.4	1.0	2	19	479	496	478	500	0.90
3	19	0.00013	0.011	16.3	3.6	1	23	506	528	506	528	0.98
4	19	0.00031	0.026	15.1	0.1	3	23	536	557	534	557	0.94
5	19	0.96	80	4.1	1.2	1	23	564	587	564	587	0.97
6	19	5.1e-05	0.0043	17.5	0.2	1	23	591	613	591	613	0.97
7	19	0.0011	0.089	13.4	0.8	1	23	619	641	619	641	0.98
8	19	3.7e-05	0.0031	18.0	2.0	1	23	647	669	647	669	0.97
9	19	0.0026	0.21	12.2	0.1	1	17	674	690	674	691	0.90
10	19	3.5	2.9e+02	2.3	0.5	2	20	1136	1154	1135	1157	0.83
11	19	1.4	1.2e+02	3.5	2.3	1	23	1163	1186	1163	1186	0.98
12	19	0.00022	0.018	15.5	0.1	1	23	1192	1214	1192	1214	0.97
13	19	1	85	4.0	2.1	1	23	1220	1242	1220	1242	0.95
14	19	7.6e-05	0.0064	17.0	0.3	2	23	1249	1270	1248	1270	0.96
15	19	1.3	1.1e+02	3.6	0.1	2	23	1277	1299	1276	1299	0.93
16	19	7.3e-05	0.0061	17.0	1.8	1	23	1303	1325	1303	1325	0.98
17	19	0.026	2.2	9.0	2.0	1	23	1330	1352	1330	1352	0.98
18	19	5.7e-08	4.8e-06	26.8	0.5	1	23	1358	1380	1358	1380	0.98
19	19	0.0027	0.23	12.1	1.1	1	21	1385	1405	1385	1406	0.94

Sequence Information

Coding Sequence: ATGGAGCTAGAAGGGGAAGAAGCACAAGTTTGCCGACTCTGTGGTCAATGCGAAAGTATCTACATTGACGTTTTTGGAGAAGAAGGTACCAAAAGATTCCTGGGTCTGAAAATTCATTCGAGAATCAACATTTTGATAGATGAGAGGGATCCTCTGCCCAAGGCAATCTGCGTACAGTGTCTGGGCAAGCTCGAATTCGTTTGTGACTTCCAAGAGGAGTGTCTACGCACCCAACAAGTGTTACGCGATCGATACATTCTGCCAACCTTAACAGACATTACTGGAATAAAACATGAAGATCCGGTACCAAGCACGTCGACAAATAACAACAACATAGAGAAGAATCTTAATTCACCAACTGAGGAGAAAGTCAAAGGTGTGGAGCAGCGAGTTCTGCGAACGGCGACAAAGTCGCAAAGATCGCGAAGAAGTATTAAGGATCAGGGGTCAAAGAATGGGGGCGAAATTATAAAGGAACCAGGCATCGACATATCTGCAACAGAAGATCAGATTGATTACAATGCGGACGAAACGGTGCAACACTCCGATCAGGCCGCAGGAAACCTCCCTACTAGGTGGCTCCGGCGTAGACAAGTCACAGAAACTGCATCTACCGCGAATAATGTGGAAAGCATTTCCAATACTTCCATTGCCAATCGATTACGAAGTCACGATAGTACGCCAACAAACATAGAGCTTAACAATGTACAATCACGCAATAGCATCAGCGAAAGTAACGTAAAACTGCCTAACAGTAGTTTGACTGAGTCCAGTATCAACAAGCAATCTAACAATAATAAACCACAAGATCCGCACACTATTCAAATACCGACGTCGGCGTTAAATAAGCTTCTGACGATTGTATCAACATCGCCCGACATAGAGGTGTCCGTAAAGGAATCGAGAAATCGTAATAGCGATGCCGAGGACATCAGCTTCACGGTGGAATTGTGCAAGAAACAGAGCGACGATGTAGAAACGGTTCGTGCAAGGGTCTTTCCTGATCAAGGTTCATGCTTGGTCGACACGGCAATCGTCGACCTACTGCGGAATCAAAGCAGTGCAGAAGTGAACTACATAATAAATGGTCTTATCAATAGTGGGGGAAAGAACGGTAGCTCCACGAAAGCAAACGATTTAGCCAAACTCGAAGAAAGATTGGAGGCCTCTCAAAATCCACAACAGCTGTTTCGGGTCGACGGCGAGGAGATCCGCGTCGACGACAACGTCGAGCATGTTGTGACCGACAATCAGAACGGATACGCATGTAAACTCTGTCGAAAATTCTATGAACGGAAAGACAAGTGTACTGTTCACGTAAAAACGCACCTCGGTATAAAACAGTACACTTGTATCCTTTGTAATGCCAAATTTGTTTGCAAGTCTGACGTGATGAAACATATACGGTGTTCTCATACGAATCCCAGACCTATACAATGTCCAAAGTGTCCTAAACGGTTCAAATCCAAGTTTTATTTGACAGAACATGATAATGTGCACAAAGGAATACGACCCTATACGTGTTCAGACTGCGGGCAGAGCTATCATCATAAGGTATCTTTGCAGATACACGTGAAGTCACATCTACCACCTCAGAATTTGGCATGCGAATACTGTGGTAAAGTCTTCCCGTATCGCACGAGATTACTTAGTCACATTGCTAGCGTACACTTGAAAAATAGGCGGAATTTCAGATGCCGATTCTGTTACAATCTTTACTCGAGTCTTGCTGTACTGAACGAGCACATTAAGACTAGACACGCGACCACGTACACATGCGAAATTTGCGGGAAAGCCTTCAAGGTCGTTTCTAAGTACAAGGCCCACGTCCTACAGCATTCAAACCCTAAACCGtttacttgtaatatctgtaACAACAGATACGCTTCGAAAGCATTCCTTAATGAGCATCTGCTCAAGCATGAAGGCCTGCGGAAGCACGTCTGCCAAAAATGTGGAGCCAGTTTCGCCCAAGCGAGTCACCTTGCCGCCCACCGTCACGTTCACGGGGAAAAGACTCATGCCTGTCCCGAGTGCGGCAGGAAATTTAACAGGCGTGACAATATGAAAATCAAAGAAGACGATGATTTGCCACACAAAGTTTGCGTAAGATGTCTGGGGACACTGGAATTTTTTTGCGATTTTTATAACGTCTGCCAGAAAACACAGAAGAAACTCACGGCTAAACAGAATACGACGTGTAATAAGCCCAAAGATGAATTCGATATCGATTCAGATAAAGAGAACGTCCATCCGATGGGAGTCTTTGCGGGGCGAAGAAGGAAGAACTCGGAGGAAGGTGTTCTACCGTCAATTAGGACGACGAAAACAATGACACGGCCGGATATTCAAGCAGACGGCCCTTGCAAGCAACTTGAGCCGTTAGCTCGCACAATAATTAGTAACAAAACTCTGGAAGAACTAGATCGTCAAGAATTACTCTCAATATCAGGCAAATCGAGTACAATGATCAATGATTTGACGAATCTCTCACAAGTTGACGGAGAGGATGGCACGAACAACTTCTGCTTGAGACGACGAAGTACAAGAAGTATGAAAACCGAGAAAGTACAACCGCGGACAGATATGACTGAACATAATGCGCTAAGACGGAAAAGAGGACGACcaacgaaaaaagtaaatacCGAGCCCTTCCAGAAACAGCACCTCCACCTAATCTCAGGTAATGAGATTAGCAACTATGATCGGCATTCGCCTACGGCGGAAAAAAATGCTTCCGTTGGCGAAAAGCTATTAAGCAAAGCAGAAAGCTCTTTAAccaaagaagaaattaaatttaaagcAAAAGGCAAGAAGGTGTCTTTAGATCTTGGGGATGATACAACAACAAATCAGTCTGTGCCATTATTCACagtaaaagaagagaaatcTTCAGATACAGAAGAAGCTTTAGTGTCCCCTGTACAAGATTCAAGAATTAATCCACTAGTTTGGATACCGGGGAATATTATAATTCAAGAGCCAGGGCAAGCCAATAGCGATGTTTTGTCTAATTCAAGTTTACCGGCCGCAAGTGAAGCAGAACCAAGTCATTCGAAAAAATCAGCCGACAATTCAAATACAGAAATTCGCGTTGGAACCTCGATGAACTTGCAAAACAACGGTAGGAAAAAAGCACTTGGGCGATCACGAACGACGTTTTTTGACTATTTTGAAAGAGATGCGGATGTTATTATTCACCAAATCACAGAGGAAGAACGGCGCATCATGCTGGAAAGTCAGCGTTCGTCCAGAATCAATGGCAGAGAAAAGTATAGGAAGATATCCGAACTTATCACCGATGAACAAAAAGGTGTAATcgaaacattttacaaagTTGATATGTCGGTGGTAAATGCGGATAAAGTTCAAGAAAATTTAACGGTGGTCGACAAGAAAACCATTCAGTGCAAAATATGCGGTCTGCTCTATCCTAGATTAGACAAGTGCCAGGTCCACATTTGGAGTCATCTTAACATGAGACCGTATCAATGCAAAGCTTGTGAATTCTCCACGGTAACGGTGAGCAATGTGCGTTGTCATATAAGGAAAAGCCATCTGAAGATTAAACCCTTTGCGTGTAATCTTTGCGAGAAGAAATACGTCACCGCAGTTCTTCTTGAAGAACATCTGAACACACATACAGGTGAACGACCTTTCAAATGCAAACTCTGTAACTTTGCCAGTTCTAGCCGACAGGTACTCAGTTATCACAATACAACGCACAAAGCTGTCAAGGATATTTCCTGTAAGGTTTGTGGGAAGGAGTTTTACTCGAAGGGCAGAATGCGCGCACATATGCTCATTCACAATAAAGACAAAGTCGTCATGTGCAAATTATGTTCCTCCTATTTGTCTAACGCAAAAGCTCTTGAGGCACATAACAGAAACGTCCACATGCGTGACTATATTTGCAATGTGTGCGGCAAGAAGCTCAAGTCAAGGAAAGCTCTGCACAATCAtcaaaatGTTCATGCAGCTGCCAAATATAAATGCACCTTATGCCCGAACGTATACAAAAGCAGTCATATCTTAAAGGAGCACCTGTTAAAGCACGAAGgcattagaaaatataaatgcaCTATTTGTGAAAAATCTTTTGCTCAGCAGTCCCACCTAGCTGCTCATATGGCAGTACATAGTGAAATAAGATTCTATTGTCCGGCTTGCCAACGGGCCTTTAATCGTCACGACAACATGAAGATCCACACAAAACGCTGTGAGGCATTTTTGGCTAATCCTGAACTAAAGGACCTTCTTATCAAACGAGAGAAGACTAAATCAACCTTCCAATCCGATGGAAGCTCCATTACGTCTAAAGATAATGATACACCTACCAAGGAAACCTCTGATATCGTAAAGTGCTCGGACATAAAGACTGATATTAACATAGATAAGACTGATGTAAATGTAAGAGTTACAGAAGGTAACGCAGATATAAACGTATCAGGAGAAAATCCTAATTACGTTGTTTTGGCTGTCGCAGAAGATAGCAATGTAATTAAAGTGGATGAGGTTCGGattttagaaaaaatagtAGACGACCCGAAACTCGTCGATGACTGCGGAATCAATGTAGTTCTAAATGTATTAGCGcctgataatttttaa
Protein Sequence: MELEGEEAQVCRLCGQCESIYIDVFGEEGTKRFLGLKIHSRINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYILPTLTDITGIKHEDPVPSTSTNNNNIEKNLNSPTEEKVKGVEQRVLRTATKSQRSRRSIKDQGSKNGGEIIKEPGIDISATEDQIDYNADETVQHSDQAAGNLPTRWLRRRQVTETASTANNVESISNTSIANRLRSHDSTPTNIELNNVQSRNSISESNVKLPNSSLTESSINKQSNNNKPQDPHTIQIPTSALNKLLTIVSTSPDIEVSVKESRNRNSDAEDISFTVELCKKQSDDVETVRARVFPDQGSCLVDTAIVDLLRNQSSAEVNYIINGLINSGGKNGSSTKANDLAKLEERLEASQNPQQLFRVDGEEIRVDDNVEHVVTDNQNGYACKLCRKFYERKDKCTVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLTEHDNVHKGIRPYTCSDCGQSYHHKVSLQIHVKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLAVLNEHIKTRHATTYTCEICGKAFKVVSKYKAHVLQHSNPKPFTCNICNNRYASKAFLNEHLLKHEGLRKHVCQKCGASFAQASHLAAHRHVHGEKTHACPECGRKFNRRDNMKIKEDDDLPHKVCVRCLGTLEFFCDFYNVCQKTQKKLTAKQNTTCNKPKDEFDIDSDKENVHPMGVFAGRRRKNSEEGVLPSIRTTKTMTRPDIQADGPCKQLEPLARTIISNKTLEELDRQELLSISGKSSTMINDLTNLSQVDGEDGTNNFCLRRRSTRSMKTEKVQPRTDMTEHNALRRKRGRPTKKVNTEPFQKQHLHLISGNEISNYDRHSPTAEKNASVGEKLLSKAESSLTKEEIKFKAKGKKVSLDLGDDTTTNQSVPLFTVKEEKSSDTEEALVSPVQDSRINPLVWIPGNIIIQEPGQANSDVLSNSSLPAASEAEPSHSKKSADNSNTEIRVGTSMNLQNNGRKKALGRSRTTFFDYFERDADVIIHQITEEERRIMLESQRSSRINGREKYRKISELITDEQKGVIETFYKVDMSVVNADKVQENLTVVDKKTIQCKICGLLYPRLDKCQVHIWSHLNMRPYQCKACEFSTVTVSNVRCHIRKSHLKIKPFACNLCEKKYVTAVLLEEHLNTHTGERPFKCKLCNFASSSRQVLSYHNTTHKAVKDISCKVCGKEFYSKGRMRAHMLIHNKDKVVMCKLCSSYLSNAKALEAHNRNVHMRDYICNVCGKKLKSRKALHNHQNVHAAAKYKCTLCPNVYKSSHILKEHLLKHEGIRKYKCTICEKSFAQQSHLAAHMAVHSEIRFYCPACQRAFNRHDNMKIHTKRCEAFLANPELKDLLIKREKTKSTFQSDGSSITSKDNDTPTKETSDIVKCSDIKTDINIDKTDVNVRVTEGNADINVSGENPNYVVLAVAEDSNVIKVDEVRILEKIVDDPKLVDDCGINVVLNVLAPDNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -