Basic Information

Insect: Hedychridium roseum
Gene Symbol: -
Assembly: GCA_963989215.1
Location: OZ022315.1:6473884-6478073[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.29 25 5.7 1.3 2 18 23 39 22 39 0.93

2 11 0.00083 0.07 13.7 0.4 1 23 305 328 305 328 0.92

3 11 0.00044 0.037 14.6 2.1 1 23 372 394 372 394 0.98

4 11 5.7e-07 4.8e-05 23.6 1.5 2 23 453 474 452 474 0.97

5 11 1.8e-05 0.0016 18.9 0.9 1 23 479 502 479 502 0.96

6 11 7.1e-05 0.006 17.0 1.2 1 23 544 566 544 566 0.97

7 11 7.9e-07 6.6e-05 23.2 0.9 1 23 576 598 576 598 0.96

8 11 2.2e-06 0.00019 21.8 1.2 1 23 604 626 604 626 0.99

9 11 1.1e-05 0.00095 19.6 0.2 1 23 632 654 632 654 0.98

10 11 8.5e-05 0.0072 16.8 4.6 1 23 660 682 660 682 0.98

11 11 0.00042 0.035 14.6 0.3 1 21 688 708 688 709 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.29	25	5.7	1.3	2	18	23	39	22	39	0.93
2	11	0.00083	0.07	13.7	0.4	1	23	305	328	305	328	0.92
3	11	0.00044	0.037	14.6	2.1	1	23	372	394	372	394	0.98
4	11	5.7e-07	4.8e-05	23.6	1.5	2	23	453	474	452	474	0.97
5	11	1.8e-05	0.0016	18.9	0.9	1	23	479	502	479	502	0.96
6	11	7.1e-05	0.006	17.0	1.2	1	23	544	566	544	566	0.97
7	11	7.9e-07	6.6e-05	23.2	0.9	1	23	576	598	576	598	0.96
8	11	2.2e-06	0.00019	21.8	1.2	1	23	604	626	604	626	0.99
9	11	1.1e-05	0.00095	19.6	0.2	1	23	632	654	632	654	0.98
10	11	8.5e-05	0.0072	16.8	4.6	1	23	660	682	660	682	0.98
11	11	0.00042	0.035	14.6	0.3	1	21	688	708	688	709	0.94

Sequence Information

Coding Sequence: ATGGAGGTCTTGAACGAGAGAAATAGTGCTGACATTCTTGACACTGCCGTAAACATTTCAGGCGATGAATGCCGCATTTGCCTAAAGAAGTGCTCTAATCCGAGTCAATTGTTTCGAAATGACAAAGAGATACTGCGAAAACTAATGGCGTTTGCTCATGTGCAGATTGTTGAAGGTGATGGATTGCCAACTGCTATTTGTTCAAACTGCCACCAACTTTTGGACATATCTTATGATTTTAAGCAGCAAATAGAAAAGTCAGATATAAAATTACGGGAAATTTTGAGGAGAAATATAGGCATGATAGGTGATACTAAAGATATATCAtctgtaaaatgttttattgatGATGTTATGTCTGAAATGTGTCATCAAGATATTTCCAATTGTACAGACCATATACCTACATGTGAAAATACACTTTCACTTGACCAAACTAATTCCATTGTCAGAATAGATGAAACATCCAACATGCATCAGCATGAAAGTCCATGTGGTAATCACGTTCTGGAAACTGAGGAAGATAACAAAGTATTTCAAGACTTAAGTGCTCATAAGCATATTATAGATAAGGTAATAAATGTGCACCCACAAGGAACTatggagaatggaataaatgaaaatcttaAAGTAAAGAATGAATTAATGTGCACAAAAACAAGTGAAAACAAAGTACATGACGATTCAGTTTCTAATAGCACTATTATAAATACCACACTggtagaaaatataaacattaatGATACATTACACAAGGATGATACAAAAGTTTTTCATAGTGATGAGGAGAAGCCACTGATAAGTCGAAGGACACGACAAAAGCGCACTCACCGTGTTGACTCTTTTGCAAGCAAGTTAGCTTTACGTCGCCAAGCGACAGCACGTGAGCGACGCTCAAATATGAAAGTACGGTATGTCTGTTATGTGTGTGAGAGACAATTTTCTACTGTTGAGAAGTTAAAGAATCACATTTTTGGTGATCATGAGAAGGAAGACAGAGCAGCGAGAGAAAGTTCTCGGGACAGGAAGACAAAAAAAGGTAGCTCAAAAGAAGAACAggttggaaaaaatgatgttcTACACAACTCAAAAAGGGAACGCAGGAATCGCGAATTTACATGTGAAGTGTGTTCAAAACGATTTGCTTATAGAAAATCTTTTTTGTCTCATGCAAAAAGTCATCCAGAGTATACATCAGAATCAATCAGTAATAATTCATACCAAAATTTAGATCCTTCAGGCGATGTTAAAGATATTGCGTTTACATTGAAAGAAAGTCAATGCAATAATGAAGACGACGATGAAGACGATGACATCGATGAAGAAGGTGATAGTGATTTACCTGTGGAAAGTCTACAATGTACACAATGTGGTAAATTGTTTGCCACAAAACGAAATTTGAAGAGACATATTTCTACGCATAGTGGAATTAAATATGAGTGTACAACATGTGGCAAGGAATTTTCTAGAATAGACAAACTAAAGGACCATGAACAATCTAAGCACAAGGATGAAATGTTTGGCCAGTCTGAGGAGGAGGAACATGATGAAGACGAAGATGTCGATaacgaaaataaattacaggatactgtagaaaataaaaaaaagGAAAAGCAACACAACAGGCCACACAAGTGTGGTTTATGTCCAAAAGCGTTTGCACATCCACAATCGTTGGCGAATCATACAGAAAGGCACAAAAGGGTAAAGGATACACAAAAACGGTTCCTATGTGAAGTTTGTAGCAAGTGCTTCGCACAGAGTGGATCTCTCGTTGCCCATATGCGGACTCATACTGGCGTAAAGCCGTACGTGTGCAATGTCTGTAGTAGAGCGTTTACGAAGAGCACATATTTACAACTACATCTGAGAACTCATAGTGGGGAAAAGCCATATATTTGTCAATATTGTAGTAGAGCCTTCGCACGTGCGAACACCTTAGCGAGGCATATTACAATGCACACAGGAGAAGCTAAGTATCATTGTCAGATATGTACAAAGTCCTTCAGACGATTAACTTCTTTGAACGAGCATACCTATACTCACACTGGCCAAAGGCCATACGCTTGTAAAATTTGCACGAAAAGGTATAACAATGCGGGTTCTTTGTACGCTCATACAAAAAAATGCAAGGCACAACGACTTTCAGGGACGGCAACGTTTGCAGTATCTGTGGACAATTCTACACAGGAAAACGGCACCTCCGTGCCACaggtattaatttattctcaACGAAAGTTAGTTGAGGAAACTACAGTTGGTCAAGTTACAGCGACACCACAATACATGATAGCGAATGTACATAATCAGAAGACCTTGTCTACGAATGTAATTCAACCATTCACATCCGACGACCCAAATTTATATACAGTTAATGCTAAGCAATTCAAGAGTCCCTACTACGCGATATATCCAAATATGTAA
Protein Sequence: MEVLNERNSADILDTAVNISGDECRICLKKCSNPSQLFRNDKEILRKLMAFAHVQIVEGDGLPTAICSNCHQLLDISYDFKQQIEKSDIKLREILRRNIGMIGDTKDISSVKCFIDDVMSEMCHQDISNCTDHIPTCENTLSLDQTNSIVRIDETSNMHQHESPCGNHVLETEEDNKVFQDLSAHKHIIDKVINVHPQGTMENGINENLKVKNELMCTKTSENKVHDDSVSNSTIINTTLVENININDTLHKDDTKVFHSDEEKPLISRRTRQKRTHRVDSFASKLALRRQATARERRSNMKVRYVCYVCERQFSTVEKLKNHIFGDHEKEDRAARESSRDRKTKKGSSKEEQVGKNDVLHNSKRERRNREFTCEVCSKRFAYRKSFLSHAKSHPEYTSESISNNSYQNLDPSGDVKDIAFTLKESQCNNEDDDEDDDIDEEGDSDLPVESLQCTQCGKLFATKRNLKRHISTHSGIKYECTTCGKEFSRIDKLKDHEQSKHKDEMFGQSEEEEHDEDEDVDNENKLQDTVENKKKEKQHNRPHKCGLCPKAFAHPQSLANHTERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQRLSGTATFAVSVDNSTQENGTSVPQVLIYSQRKLVEETTVGQVTATPQYMIANVHNQKTLSTNVIQPFTSDDPNLYTVNAKQFKSPYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -