Hros013360.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022317.1:7760986-7763641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.016 1.4 9.6 0.2 3 21 8 27 6 28 0.85 2 14 0.77 65 4.4 0.0 2 20 34 52 33 54 0.91 3 14 1 85 4.0 0.5 1 12 241 252 241 261 0.83 4 14 0.036 3 8.6 1.6 1 20 368 387 368 389 0.94 5 14 0.00013 0.011 16.3 0.2 2 23 394 415 394 415 0.97 6 14 0.00018 0.015 15.8 4.7 1 23 426 448 426 448 0.98 7 14 0.031 2.6 8.8 0.1 1 23 467 488 467 488 0.85 8 14 0.00063 0.053 14.1 0.1 2 23 494 515 493 515 0.95 9 14 4.5e-05 0.0038 17.7 4.8 1 23 549 571 549 571 0.99 10 14 2e-06 0.00016 22.0 3.7 1 23 577 599 577 599 0.96 11 14 0.001 0.087 13.4 3.9 3 23 607 627 605 627 0.97 12 14 1.4e-06 0.00011 22.5 0.8 1 23 633 655 633 655 0.98 13 14 8.6e-05 0.0073 16.8 0.2 1 23 659 681 659 681 0.99 14 14 0.00037 0.031 14.8 0.2 1 23 689 711 689 711 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCATTGAGCCTCGTCTGTCCAATGTGCTGCGGTGAAACATTCAACAACCCGCAATCGTTGAAGTATCACTTACTCAGTATGACGGACAACCTGTATTGCCCTGGGTGTTCACAGCGTTCAGATTCGGTAACGGCTCTGATACAGCATTTGGATCGGTGTGGGCAGGGCACTGACTGTGAGGAACCATTGAAAATAGAAGGACCTGCCATTCAAGATCCCGAAGCAGAAGACGACACAGACTCAGAGATTCTAATGGACACTAATGTGGGACAGATTGATCAGAGTTTTTTGGCAACTGTAAATGACAATGGTATTATGATCGTCGGTGCACCACAGACCATAGAAGTAGATGAAAATGGAGAGATCAAAATCGTGAATAATGTGGAAAGCGGAGAGACACAGGCTAATAATGACGATGGACTGGACGGGCTGAATGGACTGGTGCCTGAAAGTCAGTCTTGTGTTGtcgacagaaaagtgacagaagaAACGACTTTGTCGAGGTCCACTACACTAACAAGTGTTTCTCCTATGGTACCCAACGAGAAATCAGAAAACAAGAATGTGATTACCATTTTACCGAACGAAACGGCGATGTTAGAAGAAGGTGAAGGTGCTCTGATCAACATGGATTATATAAACGATGTAGATCTAGATGAGTCGCGGCTACTGCAAGTTAAACGGGAACTCTGCGAGCTGGGATCGGAAGTTCTGTATAGCTGTAGCAGCTGCGATATGAGCTTCAACTCTGTATTAGAACATATTAAGCGATTTCACGACGGCCAGGAAGTAGTATTGGAGATGGTAGACCATCAAGTGGACGACTTAATGCCGGTCGCTTCTGCTTCGCCGGACGAGTCAGAACCGTCGGTGAATCTACGGCAGCGTCAAACGATGAACACTTTGCGGACAGAGGAGTGCGTCGACAGCGAGGGACGTCTGTACACTAGGAAAGTGGTACAGATCGAGAGATTTTGGGACAGAAATCCCGCTACTGTTCAATCATCCAAAGCACCGATGATCGAAAAGTTTTTCTCAAATGTTGAGGGGGTCAAAGTGCGCGAAAAAAAATTGACGGTGGCACCGGTCCGAATGTACAGATGCAATCAATGTCTGCAGCAGTTTTCCAAATTAGGAAATTATCGTGTTCATGCGTGCCTTAATGGGAATAACCGGTGTGACAACTGTGATCAGACGTTCGCGACGGCCAGAGCGCTGCAATTACATGCAAAGGTGCATGACGGCGAGAGAGATCACACACCGAGGACATTTGTCTGTACGATCTGTGGCACGGAGTTCTGCTCTCACAAGAGCTTGCGATTGCATTCCCGAATGCACGCACCAGTCAGAGCGCGACATGTCGACGCCCCTGAGGGCACACCCAGTGGAACCTTTACATGTCCCGAGTGCGGAAAGATTTTATCTGTGTCTTACAAAGAGGCACATATGGCATTGCACTCCGGTGACTCCGTGACATGTACCGTTTGCAATAGAAAATTCGACTCCGCCGATAGCTTGGCTATGCACGCCGCTGTGCACGCCGAGCTAAGTCAGCCTCATTCTCCGACTCCGCCGGTCACGGAGACATTAAGCGAACCACCTAGCGACGGCCAGTCAGCTGTTAATCAGCAAAAGCCGTATCAGTGCCAACATTGCGGACGTAGGTTTACCAGACCGCACGAAAAGGTGAAACACGAACGGATACACACCGGGGAGAAACCACATGCTTGTGAGGTGTGCGGCAAAACCTTCCGAGTTTCGTATTGTCTGACTCTTCACATGAGAACGCATACCGGAGTACGACCCTACGGATGTCAGCATTGTGGCAAGCGGTTCAAAGCCTCCTCGGTCTACAATCATCATTTGCTGACGCACGGCGAAGAACGGGCGTATACCTGCCCCTACTGTCCGAAGACCTTCAAGACGCGAGTTCAGCTCGCCGGTCATAAAAACAGCCACACCAAACCATTCCGATGTACCGAGTGTTCCCGACCATTTGCCTCGTTGTATGCAGCACGTGCGCACATACAGACACACAAGAAGGACAATAATCTCAAGTTCAGCTGTTACATCTGTGGCGCTTCTTATGGTCGAGCCTTCGCATTAAAAGACCATTTGAAACAGCATGGCCAGGACGTACTTGCAGCGCCTGAACCAGCCCGAGAAGAGGAGGTGCACGAAGGAGATGACTTTGTTCTTTCTGAGGAAGGGGTAGAGGAAGTTAAACTCGTCATACCATCACCATCACCTCTGCCGGTAGGACACTCGTCAGAAGCGGAGGAATCTGATTGA
- Protein Sequence
- MGSLSLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVTALIQHLDRCGQGTDCEEPLKIEGPAIQDPEAEDDTDSEILMDTNVGQIDQSFLATVNDNGIMIVGAPQTIEVDENGEIKIVNNVESGETQANNDDGLDGLNGLVPESQSCVVDRKVTEETTLSRSTTLTSVSPMVPNEKSENKNVITILPNETAMLEEGEGALINMDYINDVDLDESRLLQVKRELCELGSEVLYSCSSCDMSFNSVLEHIKRFHDGQEVVLEMVDHQVDDLMPVASASPDESEPSVNLRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRNPATVQSSKAPMIEKFFSNVEGVKVREKKLTVAPVRMYRCNQCLQQFSKLGNYRVHACLNGNNRCDNCDQTFATARALQLHAKVHDGERDHTPRTFVCTICGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSGTFTCPECGKILSVSYKEAHMALHSGDSVTCTVCNRKFDSADSLAMHAAVHAELSQPHSPTPPVTETLSEPPSDGQSAVNQQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAAPEPAREEEVHEGDDFVLSEEGVEEVKLVIPSPSPLPVGHSSEAEESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -