Basic Information

Insect: Hedychridium roseum
Gene Symbol: -
Assembly: GCA_963989215.1
Location: OZ022319.1:5865448-5869231[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-05 0.0021 18.5 0.7 1 23 148 170 148 170 0.95

2 15 0.00092 0.077 13.6 1.1 3 23 178 198 177 198 0.99

3 15 0.00036 0.03 14.9 0.0 1 23 321 343 321 343 0.98

4 15 0.069 5.8 7.6 0.3 1 23 349 372 349 372 0.97

5 15 3e-05 0.0025 18.2 2.0 1 23 398 420 398 420 0.98

6 15 1.7 1.4e+02 3.3 0.0 1 23 435 457 435 457 0.86

7 15 0.52 44 4.9 0.4 2 23 464 486 464 486 0.94

8 15 0.0038 0.32 11.6 3.0 2 19 494 511 494 515 0.95

9 15 0.00019 0.016 15.7 3.5 3 23 523 543 521 543 0.97

10 15 0.014 1.2 9.9 0.1 3 23 550 570 549 570 0.97

11 15 8e-06 0.00067 20.0 0.4 1 23 579 601 579 601 0.98

12 15 0.0035 0.29 11.7 0.2 3 23 609 629 607 629 0.97

13 15 0.0031 0.26 11.9 0.2 3 23 637 657 635 658 0.94

14 15 0.047 3.9 8.2 0.0 1 23 672 694 672 694 0.93

15 15 0.0024 0.2 12.2 0.0 1 20 1087 1106 1087 1109 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-05	0.0021	18.5	0.7	1	23	148	170	148	170	0.95
2	15	0.00092	0.077	13.6	1.1	3	23	178	198	177	198	0.99
3	15	0.00036	0.03	14.9	0.0	1	23	321	343	321	343	0.98
4	15	0.069	5.8	7.6	0.3	1	23	349	372	349	372	0.97
5	15	3e-05	0.0025	18.2	2.0	1	23	398	420	398	420	0.98
6	15	1.7	1.4e+02	3.3	0.0	1	23	435	457	435	457	0.86
7	15	0.52	44	4.9	0.4	2	23	464	486	464	486	0.94
8	15	0.0038	0.32	11.6	3.0	2	19	494	511	494	515	0.95
9	15	0.00019	0.016	15.7	3.5	3	23	523	543	521	543	0.97
10	15	0.014	1.2	9.9	0.1	3	23	550	570	549	570	0.97
11	15	8e-06	0.00067	20.0	0.4	1	23	579	601	579	601	0.98
12	15	0.0035	0.29	11.7	0.2	3	23	609	629	607	629	0.97
13	15	0.0031	0.26	11.9	0.2	3	23	637	657	635	658	0.94
14	15	0.047	3.9	8.2	0.0	1	23	672	694	672	694	0.93
15	15	0.0024	0.2	12.2	0.0	1	20	1087	1106	1087	1109	0.94

Sequence Information

Coding Sequence: ATGGATGTGGCAGGGGACTTGTCGTTGCAATGGGTTGAGGAAGTAGGGAATGTGATTCACGAGGAAGTAATATGTGGGTTGGAGGCAGAGTTGGTGGCTCCCGAAGAGGAAGTCATAGGGGCTTGCGAAGAGGTGGCAGTAGAAGAAACAGTAGAATCTGTTCCTGACCCTATAGGTGAACCCACAACCGAAACAGAAATCCTGATGGTTCCTCAAACAAGTGATATGGAATCTATTTATATAGTTCCACAGGATCAAGGTCATGATTACCTCAATATACAAGTTACTGAAGAAGTAATAACAGATAATTGGGACAGAGCAGGACCAGACGATGGTGTGGAGATACCAGAGACAAAGGTGTCTCATGACAACTTACTGGAATATGATGATATGGAAATTCCTTTACCGATAGATCAAGATTCTTATACAAACACTCGACCATACCCATGTGATTTTTGTAGTAGGAGATTCAGAAAAAAGGCAAATCTTATGAATCACATGGTGGCACATCAGACAGATCGACCACACGGGTGTAATTTATGTGGGGCTCGATATGTACGAAAATGTGATCTTATGAACCACTTGAAAATTCATGCTTATGCCCCATCAAGGGACGGTTTAGAAGACGATCTGAATGACGATGATTCGTTACCGCCGGAAGAGGAGGAGACAACAAAAGGTCGGCGCAAGAAGGTACAATCGAGCGCACCTaggaaacgtaaaaataacGCCGCTGTTGCCAAAAGAAATAACGAGGACGGAAAGATCGAAATGGGAAAGTACGTGAATAAATCATACGATTATGTTGACGAAGATATGCGACTTTTGGAAGAAATGGCTGGCCGAAATACAGGGCGTAACAGCAGTTATGCATCCAGTTCCAGATGGAACGAAGAAATGTCTCCGGTTTCAAACGAGGCACAGGCTCCGCGATGGCCTATCACAGACCCAACTAAGCCTTACGTATGTCAGTTCTGTGGTGTTGGATTTGCGAGAGAGAAAGCACTTGCTTCGCACGCACGTATCCACGGTGGGGACAGTCCTTTCGAATGTACATCTTGCGGTGATATGTTCTGGGATGTCAACAGTTTGCGGGAACACATTAGAACCAAACACGGTGGTACTATACAATCAGATACAGAAGAGGTGGACCAAGATGCTACTTATACAGGTGACGAAAGATTTGGGGAATTCTATTGCAATACCTGCGGTGTTCCCTTCCACCGCTTGGATCTCCTTAAGCGTCACCAAAAGATTCACGTGAAGCAAGAAACGGACGTAGTAGAAGGTTCGAGTCAACATCATGTGTGTAATGTTTGTGGAGAATGGTTTGAGGAAGCCTTAGCTCTTTTAGCCCATGCTGAACTTCATGCCAGGTCTCCAAGTCGGCGTTGTTTGCTCTGCGGTGAAAGATGCCGCGATGATGCCGAAGTCGCAGAACACGTTCGCCAGAATCATGCCGAGGATGCACCACCAAATACTTGCACGCTTTGCGGCAAAACGTGCAAGGACAAACGTAGTTTGTTAAAACATTCTTGGGTTCACAACGTTGACAAAACTTTTGGTTGCACAAAATGTGGCAAACGTTTTCACAGTAAAGCCAGGTTACGGAGACACATGGTTTCCCATCGCAATAAAATGGTTGCTTGCGATGAATGCGGAGAAGAGTTCCCAGACGGTAGAGCTCTTGTCAGTCACCGTCACTCTCACAACAAAGAATTGGGTGGACGATCGTTCCCCTGCCGAGAGTGCGGCAAAACCTTCGGAAGTCGCAGCTCCCAGCAAATCCACATCCGCATTCATACCGGCGAAAGACCATACGGATGTAGGTTTTGCTGGAAAGCCTTTGCGGACGGAGGGACGTTAAGAAAACACGAACGAATTCACACCGGAGAGAAACCCTATGGATGTGCGATTTGTCCGCGAGCTTTCAACCAAAGGGTAGTCTTACGGGAACACGTACGTGCTCATCATTCTGGTCCTGATCCTAAATGCGTTGGTAGTGCCACTCCGTACTTGTGTAAAGTATGTGGCGACTCCTATTCGACATCTGAAGAAATCGTGGCTCATATCGTTCAACATTGCGACGATAATACAGCACTGAGACGTCAGCCTCAGACAGGCCCGCGAAAGTACAAGAGAAGGTGTAAGCTCAAACCACGCGAGACAAACACAATGTTGCGCATGAACGAAAATTACGATGCTCTCGATGCTGGCTCCGACTCCGATGACAATACAAAACGGAAACttggaaggaaaaataaacagCATCGATCTAACGTTGAGGAAGGATTCCAGAATGTCTTGAAAAGCTTCGAAAGCTCATTGCAAAACATAAACTCGATAGTCAGTAATTCAAAGGTGAACCCTGTGAAGTCGAAGCtttcgaagaaaaaattgcgaaaagaggagaagaagaacgaaGCTCAGGGGACAAATCAGCCCGGGCGACCGAAGATGATACACACACAAAAGACACGCGTGCCTGTAGAGGTTGGCAGTGATGGCGTTAAGAAAGGTCAGAAAACAAAGACTATGGTAACACGAACACCTAAGGTAATGCCCAGTGAACACAAGCCTGGAATCTTCCCTGGGGGCGAGAGGAACAGGCCGAGAACAAAGAACGTGAGTTATCACGTTGAAGGAAAACTCCAGTTATCACCGGCGACATTCCCAAAGCCAAAAGAAGAGACCGTAAAGACATCTATCTTGACTAATCAGCAACAACAAATAATCTCTAACATAAAACTGGAGACAGTGTCAAAAACGAGCAATAATTACACAAACAATAATGGCAATCTCCTTGACGTGAAGAAGGAGAAGCTTTCTCCTTCGACACCTTCTCCCAAGAAGAAAGTGTCCGTGCTCAAGCGAAAGAAACAGAAGCATATAACCATTAAACAGGAATCGAAGCATGATGATGATGACATGGTggaaatgcaaaataataataatactgaaGATAACGATACGATGCACTTGATGGAACATGCGGTAGACGGCAGTAGCATGGAAGTCGCCTTTGAGGCTAATGTTGTTGCGGTCGAAGATGAAAGTATCCTGCCCGACATTTCAGAAAGGGTAAACAGCGTGGTAGatgacgaggaggaggacgaggaggaggacgagaaCAGGGAAAATGGGAATGTTCAGTTAAGTGTGAAGGTCGAATCGACATCTCAACACATGCTGGCTGTTCATAGTGTTATCACTCCCGTTGACGAGGTACCAGAAACAATAATACCAGACGTCGTAGAATATACGTGTGAAATGTGTTCGGCTGTGTTCTCTAGCCGTGCCGAGCTCTTGGTCCACGTGCCGATACatatttga
Protein Sequence: MDVAGDLSLQWVEEVGNVIHEEVICGLEAELVAPEEEVIGACEEVAVEETVESVPDPIGEPTTETEILMVPQTSDMESIYIVPQDQGHDYLNIQVTEEVITDNWDRAGPDDGVEIPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYVRKCDLMNHLKIHAYAPSRDGLEDDLNDDDSLPPEEEETTKGRRKKVQSSAPRKRKNNAAVAKRNNEDGKIEMGKYVNKSYDYVDEDMRLLEEMAGRNTGRNSSYASSSRWNEEMSPVSNEAQAPRWPITDPTKPYVCQFCGVGFAREKALASHARIHGGDSPFECTSCGDMFWDVNSLREHIRTKHGGTIQSDTEEVDQDATYTGDERFGEFYCNTCGVPFHRLDLLKRHQKIHVKQETDVVEGSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGERCRDDAEVAEHVRQNHAEDAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKELGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSATPYLCKVCGDSYSTSEEIVAHIVQHCDDNTALRRQPQTGPRKYKRRCKLKPRETNTMLRMNENYDALDAGSDSDDNTKRKLGRKNKQHRSNVEEGFQNVLKSFESSLQNINSIVSNSKVNPVKSKLSKKKLRKEEKKNEAQGTNQPGRPKMIHTQKTRVPVEVGSDGVKKGQKTKTMVTRTPKVMPSEHKPGIFPGGERNRPRTKNVSYHVEGKLQLSPATFPKPKEETVKTSILTNQQQQIISNIKLETVSKTSNNYTNNNGNLLDVKKEKLSPSTPSPKKKVSVLKRKKQKHITIKQESKHDDDDMVEMQNNNNTEDNDTMHLMEHAVDGSSMEVAFEANVVAVEDESILPDISERVNSVVDDEEEDEEEDENRENGNVQLSVKVESTSQHMLAVHSVITPVDEVPETIIPDVVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01424531;
90% Identity: -
80% Identity: -