Hros006020.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022310.1:2197166-2200075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7e-05 0.004 17.6 1.9 1 23 299 321 299 321 0.97 2 12 0.00023 0.02 15.4 4.5 1 23 325 347 325 347 0.98 3 12 0.00052 0.044 14.3 3.9 1 23 352 374 352 374 0.96 4 12 0.00056 0.047 14.2 2.4 1 23 426 448 426 448 0.98 5 12 0.00077 0.065 13.8 1.4 1 23 453 475 453 475 0.97 6 12 9.7e-05 0.0082 16.6 2.2 1 23 524 546 524 546 0.98 7 12 0.00028 0.024 15.2 0.9 2 23 554 575 553 575 0.97 8 12 9.6e-07 8.1e-05 22.9 2.1 1 23 585 607 585 607 0.96 9 12 0.00022 0.018 15.5 1.6 1 23 613 635 613 635 0.97 10 12 0.00016 0.013 16.0 0.7 1 23 641 663 641 663 0.98 11 12 4.6e-06 0.00039 20.8 2.0 1 23 669 691 669 691 0.96 12 12 8.3e-05 0.0069 16.8 0.3 1 22 697 718 697 718 0.96
Sequence Information
- Coding Sequence
- ATGAATTCCGAATATTTTGGTTTGCCATTGAATATGGACAGAGTATGCAGGATATGCCTAACAGAAGGTACTAATTTGTCACCAATATTCTGCACTGACCAAGAAGCAGATGATTTTTCTGGCCTCCCACAGAAAATTCAAGTATGTGGATCTATCGATATTCATGAGCAAGATGGGTTACCTTCCCTAATCTGTGATGTCTGTATCTATAAAGCAAGTGTTGCTCATGAATTTAGGCAACAATGTCAACATTCGGATGCTAGGTTGCgaatgtattataataaacCTGCAAGACGTATGCCTGTGGATTCAAGCACTCAAACTGATCCACAAACAAGAATAATTTTAACCAAAAAACCATCCAACCTGCAAGATGATTATTTTATAAAGGAAGAAATGCATATGAATTCCGCAGAGCCAGAAGGATTTACTCGATCTAATGATCCATTTCCTCAAAGTCAACCTGATTTGAATCCCAATCAAATGGACATGCAAACTGAAAAACTGTTCATGTGCGCTATGGGGTTTGAGGGGTCTAAAGAGGTTGAGAAAGAACCATGTATTACAGAAGACAAGATACATATCGTCAGCCTTGAAGCTGTAGATGAAACATGTGTGCAGACTAATGCTCCAGAAAATTTAGACACGAACAGTAAATCACAGGAAATTCAACTCATACCTGAGGAACCGGAGAAATCCATTGAAGAAGGTGAAGACGATTTTCTCGGTAATGATTTATCTACTGATAATGTAGATACAGAGGAAGTACCTTCGCTGAAACGTACATCAGCTAGAAAAGCAAAATCGTTACCAAGTAAAACATACAGCGAGGATGAAATTGATGATAATTATTACGATCGTAGCAGTGATAGCCAAGATTCGGAAGAGTTGAAATTCAAGTGCAAAGTGTGTTCAAAACGTTACGCTACTCAAAAAGGATTGAAAAAACATTCTCTCGTTCATGAAAAGAAGCACAAGTGTAACATATGTctgaaaacattttacaagCAAGAAAACATGGAGAAACATAAAAAGATACATGCTTCGAAGCCCCACGCTTGCCAGTTGTGTCACGCATCGTTTTCAAAATCGCAAAGTCTTGTACGTCATTTAAAATCACATACAGAAAAAGTGAATGACATAATTAAGCAGATAAATAGCGATGACCAGAAAGAAGACAAGGAGCcgaaaaaagaattgaaaaGCGAGGATGATACGAACGACGAGGGTGGCGCATTAAATGAAACTGATGAATTTGAGAATGCACCTGAATTGTATAAATGTGATGTCTGCAGTCAGTATTGTTCCTCTCTAAGAAATCTAAAAAGACACGCGCTTGTACACGGTGATAAGAAATACTCCTGTACGGTGTGTAAAAAATGGTTCTTCAGACCAGACACGTTGAAAAAACATGCGGAGAAACATGGGCATGGTTTACTAGATAATTTAATGGATGATAATAAATTGTTTGATTCAGATGACGAACCTTTTCCGAGCGACACAGCAAATACATTGCCTGAGAACAATGAtgtaaagaaagaagaaagtgaTGAAGAAGGTTCAGGGGAGTACAAGTGCCAACATTGTGACAAAGTGATGGCAACAAAAAAAGGCCTAAGACGACATGTATCAATGCACAAGCCTAAAGCAGAGCCAGTAACTTGCGAAATTTGTAGAAAAGTCTGCGCTAGTCAAGCTCGTCTCGTTCTACATCAAAGGACACATAAGCCGAAAGAGAAGGTACCACGAGAGTATCTCTGTCACATATGTAGTAAAGTTTACCCGAGCAATTCATCCTTGACGTACCACATGAGAACTCACACGGGAGTAAAGCCACACGTTTGCAAAACCTGCAATAGCGGATTTACGACGACCACAAGTCTTGCGAACCATATTCGCATACACACAGGAGACAAACCGTTTGTGTGTCACGTCTGTAGTGCAGCTTTTGCAGTGAGTTCTGCCTTTAGGCGGCACTTGACACGGCATACGGGGGAAGCAAATTATCTGTGCAAAACTTGCGGTAAAGCCTTTAAAAGGCTTAGTACACTCAAAGAGCACACTTACACCCATTCTGGCGAAAAACCGTACGTTTGCAAGACATGTGGTGCTGCGTATAGTCATAGCGGCAGTTTATTTGCCCATCAGAAACGTTGCCGTGCTCAGTACGGCGAAATGGTTGTTGAAGAACATCATCATACCGTTGGGCATCATATTCATGTTAATAACGTACAGTCTGCGGTAAGGTCGCTCGCTGTGATAGGACAAATGTTTTAA
- Protein Sequence
- MNSEYFGLPLNMDRVCRICLTEGTNLSPIFCTDQEADDFSGLPQKIQVCGSIDIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPARRMPVDSSTQTDPQTRIILTKKPSNLQDDYFIKEEMHMNSAEPEGFTRSNDPFPQSQPDLNPNQMDMQTEKLFMCAMGFEGSKEVEKEPCITEDKIHIVSLEAVDETCVQTNAPENLDTNSKSQEIQLIPEEPEKSIEEGEDDFLGNDLSTDNVDTEEVPSLKRTSARKAKSLPSKTYSEDEIDDNYYDRSSDSQDSEELKFKCKVCSKRYATQKGLKKHSLVHEKKHKCNICLKTFYKQENMEKHKKIHASKPHACQLCHASFSKSQSLVRHLKSHTEKVNDIIKQINSDDQKEDKEPKKELKSEDDTNDEGGALNETDEFENAPELYKCDVCSQYCSSLRNLKRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLMDDNKLFDSDDEPFPSDTANTLPENNDVKKEESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVEEHHHTVGHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -