Hros016426.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022322.1:1519380-1522103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.3 25 5.6 0.0 2 20 121 138 120 140 0.87 2 14 0.00031 0.026 15.0 1.9 2 20 145 163 144 166 0.94 3 14 0.0013 0.11 13.1 1.4 1 23 172 195 172 195 0.91 4 14 3.2e-06 0.00027 21.3 0.9 1 23 201 223 201 223 0.98 5 14 2.1e-05 0.0018 18.7 1.5 1 23 377 399 377 399 0.97 6 14 0.00023 0.019 15.5 0.1 2 21 409 428 408 429 0.93 7 14 0.00056 0.047 14.2 1.9 1 20 451 470 451 473 0.92 8 14 0.003 0.25 12.0 0.7 1 23 478 501 478 501 0.95 9 14 1.3e-06 0.00011 22.6 0.3 1 23 507 529 507 529 0.98 10 14 0.0021 0.17 12.4 6.3 1 23 536 558 536 558 0.98 11 14 0.00036 0.03 14.9 0.4 3 23 566 586 564 586 0.97 12 14 0.00039 0.033 14.7 0.3 1 23 592 615 592 615 0.96 13 14 0.65 54 4.6 0.1 1 23 629 651 629 651 0.92 14 14 0.0007 0.059 13.9 0.0 2 23 885 906 884 906 0.96
Sequence Information
- Coding Sequence
- atggaaGCACACGAGAGTGAACAGTACGCAAGTTTCCCTTTGTCGGGAGTGCATGACACGATTCAGGACAATATTATATCCCACGAGGAGATATGCGAGCCAGTGGATGAGTGTGTTCTGCAGGACGGACTGACAGAAGTGCCAGTCACAGATGTCAGTGCCGATATCGCAGAGGCGCAGGTGGCAGTGGAGATTCTGACTGAGCGTTCGGACGAAGACGATGAGAACTCAGTGGTGTATCCGATATACATAAAACAGGAGGACCAGCAGCAGTACACGTCTGGGGACGATGAGTCAATGGCCGTAGAAGCCCTTCGCCAGCTCGGAGGAATGTACCCCTGCTTCGAGGACAAGAAAATCCCCTGTCCAAACTGCTCCAACAGCTTCACGCAGGCAGAGATGAGCAAGCATCAAGCTGCGTGCAACAAACTGTCCTGTACCACCTGCGGGGAGAGGTTCGAGAGGAAACAGGACCTGAATAACCACATGGTTTGTCACCAGGTCGACCGTCCACACGCCTGCAGGACCTGTGGCAATCTTTTCCGCTCCAAGAGCAGCTTGCAGTCTCACATGGTGCAAGTTCATCAAGTGGAAAGGCCTCACAAGTGTACGATTTGTGGTGCGGACTTTCAACGTCCTTCGAGCTTGTCGAACCACATGAAGATCCACACTTACGTCGCTGGCAGGGCCATTAACCAGGCTCAGGGGAACAACCTGTCCCAGTCGACTGACTCGTTTCGCAAATGGCCGGAGAACAGCGTCACCGACGCTGCGACAGTCCCAGTGACGTCATCCTCCGTCGAGGCCATTCAGAATTACGACGTTTGCCAGGTGCAATGGGCAGTTCCTGCTTACAGTTTCCAGAACGACCAGTCTGCGGTGAACTCGATCACCGAGCAGCAGGAGAAAATCGAGACGTTAAACGAGTACACGGTGATGCCGAACGGTGAAGTGGCTCAGTTCGAATACACCGAGCAGAGCAACATGAGTGGACAGATAACTCAGCAGTACAATCTTTCCCTCAACACCTTCGACAATTCCGACGGTTTGGTGAAGGTCGAGAGTTTGCAGTACAGTAACGAATCGAGGAGGAATTACGTGGAGGTCGAGGCAAACGGGACTAAGCAACACACGTGCAGTCATTGTGGAGTGAGTTTCTCGAGAGCAACGGCCTTGGCTTCCCACGAGAAGATCCACGTGGCCAAGGGTTGGGCAGTGCCGATCGAGTGCGAGTATTGCGACAAACAATTCCAGGACGCCAATCATTTAGCGGCTCACCAGACTACCTGTGCTAAGAAGATGATGCAGAACAACCTGGAGCTCGGTTTGCCGAACAGCAAGTGGGGGAAGCACGCCTGTGCAGAGTGCGGGAAGAAGTTCACGACGAAACAGAAGATGTTCCGTCACCAGTGGATCCACCGGAAGAAGACTCATTCCTGCGAGGTCTGCGGCTCTCAGTTCGAGAAGCAGAGCCAGCTGGACGAGCACAGACTCTCCGCTCACCCTGGGGATTCTCCGTTCACCTGCACGGAGTGCGGCAAGAGTTTCGTTTCTCGCCAGGGTCTCTGGGAACACGGGAGAACCCACGCGGGGAGCCCAGCTCATTTCCATTGCGATACCTGCTCGAAAACGTTCTCTTCCAGGCAGGGATACCTCATTCACCACAGGACGCACACCGGGGAACGACCCTACGGATGCAAGTTCTGCTGGAAGGCCTTCAGGGACGGAGGAACCTTGAGGAAACACGAGAGGATACACACGGGGGAACGGCCACACGTTTGTCCGCTTTGCACGAGGGCTTTCAACCAGAAGGTCGTCCTCAGGGAACACGTGCGCTGGGTCCACGCAGCGGGGAAGAACGAAACGGAAGTCACGGGACCGCCATTTCCCTGTCCTCTGTGCGGGGCGTTGAACCAGGACAGGGACGAACTCTGCGCGCATATCGTCAAGCATTCCGACCAGATGATCGCTGAGGCAAAGGCCAAGACCAACAACAACTCCAAGAGCAAACactcgaagaagaagacgaaggcCAGCTCGTCGCAGAGCAAGAATTCCGCGAGAGCAGTGGCCAAGGTCGACGAGAACGAAGTCTTCCTGTCGATCGCCGAGACGGTCGACAAGAATGACGAGCAGCAGAGCTTGCCCGACAAACGAGCCGGTACTCTATTGTTAGTGACGACTGATAAACACAACAACATGCGGCTAATAGCCGAGGGGAAGTCTGCTGATGATTTGCAGGACGGTGAAGGCCGAAGAACCTCGCTCAGCTTGATCGCCATTGAAAAACGGACCGAGGGTTTGATTGATGAAGACACTGGCCACGTGGAACAAGATGGCGACGTCCTGAGGACCGAACCAGAGCTCACGACTATGCACATCATTCGAACGAGCAAGCAAAGCAATACTCTGCATCTCATCACCAAGCAGAACGAGTCCCTGCCGGTCCTCACGATCGCCAATCCCCAGGACCACGAAGATTTCTCCAGCCAGATTGCCCAGATCGCAGGTGACGTTCCCATGGAGATCACTGAAGACCAGGAACAAGAGATCGAGTGCCAGAACGACGAGGCGGAAAACTTGCTCGAGGAACAACAGGTCATCCAGGTTGTTCAGTATCAGAGCAACGACAGCGACGAAGGAGAGGACATGGTCTGCGGAATTTGCGGCGAGGATTTCACGGATAAAAATGTCCTCATGGAGCACGTGAAGATACACATTTAA
- Protein Sequence
- MEAHESEQYASFPLSGVHDTIQDNIISHEEICEPVDECVLQDGLTEVPVTDVSADIAEAQVAVEILTERSDEDDENSVVYPIYIKQEDQQQYTSGDDESMAVEALRQLGGMYPCFEDKKIPCPNCSNSFTQAEMSKHQAACNKLSCTTCGERFERKQDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQSHMVQVHQVERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAINQAQGNNLSQSTDSFRKWPENSVTDAATVPVTSSSVEAIQNYDVCQVQWAVPAYSFQNDQSAVNSITEQQEKIETLNEYTVMPNGEVAQFEYTEQSNMSGQITQQYNLSLNTFDNSDGLVKVESLQYSNESRRNYVEVEANGTKQHTCSHCGVSFSRATALASHEKIHVAKGWAVPIECEYCDKQFQDANHLAAHQTTCAKKMMQNNLELGLPNSKWGKHACAECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQSQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCTRAFNQKVVLREHVRWVHAAGKNETEVTGPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNSKSKHSKKKTKASSSQSKNSARAVAKVDENEVFLSIAETVDKNDEQQSLPDKRAGTLLLVTTDKHNNMRLIAEGKSADDLQDGEGRRTSLSLIAIEKRTEGLIDEDTGHVEQDGDVLRTEPELTTMHIIRTSKQSNTLHLITKQNESLPVLTIANPQDHEDFSSQIAQIAGDVPMEITEDQEQEIECQNDEAENLLEEQQVIQVVQYQSNDSDEGEDMVCGICGEDFTDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -