Hros014795.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022319.1:5991861-5994928[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.021 1.7 9.3 0.9 2 20 408 426 407 428 0.93 2 16 0.00025 0.021 15.3 1.2 2 23 437 458 436 458 0.93 3 16 0.00025 0.021 15.3 1.3 2 23 472 494 471 494 0.95 4 16 0.015 1.2 9.8 0.2 1 23 500 522 500 522 0.97 5 16 5.2e-06 0.00044 20.6 2.6 1 23 528 550 528 550 0.96 6 16 4.2e-05 0.0035 17.8 3.0 1 23 559 581 559 581 0.97 7 16 2.9e-05 0.0024 18.3 1.5 1 23 587 609 587 609 0.98 8 16 3.1e-06 0.00026 21.3 1.3 1 23 614 636 614 636 0.97 9 16 0.027 2.3 8.9 7.1 1 23 642 664 642 664 0.98 10 16 0.00042 0.035 14.6 1.1 2 23 684 705 683 705 0.97 11 16 3.2 2.7e+02 2.4 2.0 2 23 713 735 712 735 0.93 12 16 0.0015 0.13 12.8 0.3 1 23 741 763 741 763 0.96 13 16 0.0003 0.026 15.1 2.6 1 23 769 791 769 791 0.98 14 16 9.6e-07 8.1e-05 22.9 3.0 1 23 797 819 797 819 0.98 15 16 1.1e-06 9.1e-05 22.8 1.5 1 23 825 847 825 847 0.99 16 16 0.0016 0.13 12.8 0.1 2 23 853 874 853 874 0.94
Sequence Information
- Coding Sequence
- ATGAGAGTAACGTGTGCTTCAACGAGTTGCAAATATTCATTAGATACGGAGGACTCGTCACAggttattttcataaattttccgAACAATGAAACGGCTAAGTTGTGGGCCCAAAGTTGTGGCAGACCAGACTTACTGTTGAAGTCTAACGAAGAATtacatttaaattattatatttgttctCATCATATTGAAGATCGGTATTATGTTAATAAGTCGGATGCTATTGTAATTCAGCAAGGAGCGATACCAACATTGTTTAATAGGCAGTTCAATGGTCAAAAAGAGAATTCGTTAAATGGGTTTAGCAGGCACAATCACATGGAAATAACTAACAATGCAACATTAACATATTGTGACATAAATATGGAATTAGACCAATATCATGACATTTCTATTAGACTGAGTAATTTGTGTAGAATATGTGGTGAATCATCCTCTGATGGGATGGAAATATATGATGAAAAAGGCATGAAACTAAAGTTGAAAGATAAGATTAATCTTTACATGCCTGTATCAAATAATGTAGAAGATTTAATGCCACAAAGAATATGCATTGATTGTTACAACAAATTAGAAATTACACACTTATTAGTTTTAACATGTCTAAGGACAGACATAAGATTGAGAAGATACTTGAATATTGAAGAAGCGCCAAGTTATGATAAGAGATTTGATACACTACTTCAAGAGTGTTCAATAGAAGTATCTCAAGAAATAGCCATGGATAATGGAGCAGAACCTACAAACCAGTATTTTCCCTCAGAGAAAGTTGGCATAAATAATGAACTAAGTGTTCATATAAAAGATTGTATTGCAGAGACtgatgtaaatgaaatacacACTGTAACTCAAACATCTGACCCACAgaaaagtaatattaataacagaaagattggaaacattttaaaaaatgacataCATCCTGACTTAAATAGCTTTATGGAGTCGTACAGAAATACAAAGAGTATTCCTAATGACTGTAACCTCCAACCCACACATGCTGAAAGTAATGAgactaataataaaaaagaaaacaatgaaagCCTGCATGTACATTGTAAGGACACTTTTAAAACTCAGGAGATATTTAAAAACCATAAAGTTTTGTGTGCAGAGGAAGAGCTGGTACATCTACAAACACACAAAGAAACCTCAAACAATATAGAGCATCAAGAATCTAATGAGATGGAAGCAATTAATTTACAGTTTGTAGTGCAAACTTGTAACATCTGCCAACAGATATTTGAAACAAAACAGTTGTTTGAAGAGCATCGACATTCATACTGTAAATCAGTACACCAAATAGAATGCCAAATGTGTGGCCAGTCTTTTGCTAATAATGAAGAGTTCATTAGGCACAAACATTTTCATGACAAACAAACTGCAAGTGCCATATCCTCATCAACTAAAAAATGCGGCCATTGCCAAGTTGTTTTTAATACTAAGAAAGAACTATTGAATCATATTATGGAGCTTCATAAGGGACAATTGTTGTTCAGATGTTTCGCCTGCGAAAAAACATACGAAAAATGGGCGAGTCTTGACGTTCACGAAGCTACTCATAGAGTTGACAAACCGTATCTCTGTGACTTGTGTGGCAAAAGCTTCAAACATTCTAACAACTTACGGGGACATAAGAGAATACATTTAGACGATTCCAAGAAAAAAAGACATGTCTGCGACGTATGTGGTAACGCATTTAGATCCAGATTTCACTTACGTGAACACATGAATCAACATAATGGTAATAAGCCATATTCATGTGAGCAATGTGGCAAAGCTTTCTACAAACGTATACAATTACGTCAACACAAGTTATCCCATGGGTCGCACAAACATATATGTCCGGTTTGCGGTATGTCATTCAATCGTAGGGGAAATATGAATACACACCTCAAAAGGCATAACAGTGATGGATTGTACTCGTGTAGTGTTTGTAGTCATAGATGTAAATCCATGAGCGAGTTAAAAATGCACAGAAAGAAACATTCGGAAGAGGACATAATCGAGAGTATAAAGAAAAAGTCATCGGACAAGCAGATATGGCAATGTCACGTTTGTGACAAAGTCTTCGCTAAAcgttcaattttaatttatcacGAGCGTAAGCATAATGAGGAGAAGTCAAATGTCAAATGCGACATATGTAGCAAACAACTAGCCTGCAAGACTTCTTTATTGTACCATAAAAAGTCGGCGCATTCGACCGAAAGACCACATATGTGTCAGTATTGTGGCGAAGCGTTTGTTTCCCGAGAGGCGCGCTTGATACACGAACGTATACATACCGGTGAGAGGCCCTATGTGTGCAAAATATGTGATATGCAGTATAGATGTTCTAGTAATTTGAGTCAACAtatgaaaattcattcaaatatCCGACCTCACAAATGTCATTTCTGCGGCAAGGCTTTCACGCGTAAAGGCGCATTAAATGTCCACGAGAGAATACATACTGGTATCAAACCATACGAATGTGAAATTTGTGGTAGAAAATTTTCTCAAAAGAATGATATGCTGAAACATACCAAGACCCATGACCTTAAACCGGCCGAGTGTGAATACTGTAATGAGATATTTCCAACAAAAAAAGATGTCTTAAAACACATTGTAGCACACGAATTAAATAGAAATCCGACGGAAGAGTATTCACAAGTATCGCAACAAGTACCAACGTTCACGGAAAATATAACGTATTCTCATATTATTTAG
- Protein Sequence
- MRVTCASTSCKYSLDTEDSSQVIFINFPNNETAKLWAQSCGRPDLLLKSNEELHLNYYICSHHIEDRYYVNKSDAIVIQQGAIPTLFNRQFNGQKENSLNGFSRHNHMEITNNATLTYCDINMELDQYHDISIRLSNLCRICGESSSDGMEIYDEKGMKLKLKDKINLYMPVSNNVEDLMPQRICIDCYNKLEITHLLVLTCLRTDIRLRRYLNIEEAPSYDKRFDTLLQECSIEVSQEIAMDNGAEPTNQYFPSEKVGINNELSVHIKDCIAETDVNEIHTVTQTSDPQKSNINNRKIGNILKNDIHPDLNSFMESYRNTKSIPNDCNLQPTHAESNETNNKKENNESLHVHCKDTFKTQEIFKNHKVLCAEEELVHLQTHKETSNNIEHQESNEMEAINLQFVVQTCNICQQIFETKQLFEEHRHSYCKSVHQIECQMCGQSFANNEEFIRHKHFHDKQTASAISSSTKKCGHCQVVFNTKKELLNHIMELHKGQLLFRCFACEKTYEKWASLDVHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRIHLDDSKKKRHVCDVCGNAFRSRFHLREHMNQHNGNKPYSCEQCGKAFYKRIQLRQHKLSHGSHKHICPVCGMSFNRRGNMNTHLKRHNSDGLYSCSVCSHRCKSMSELKMHRKKHSEEDIIESIKKKSSDKQIWQCHVCDKVFAKRSILIYHERKHNEEKSNVKCDICSKQLACKTSLLYHKKSAHSTERPHMCQYCGEAFVSREARLIHERIHTGERPYVCKICDMQYRCSSNLSQHMKIHSNIRPHKCHFCGKAFTRKGALNVHERIHTGIKPYECEICGRKFSQKNDMLKHTKTHDLKPAECEYCNEIFPTKKDVLKHIVAHELNRNPTEEYSQVSQQVPTFTENITYSHII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -