Hros006458.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022310.1:6089566-6098065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 6.6e-06 0.00055 20.3 1.0 1 23 217 239 217 239 0.98 2 31 0.0041 0.35 11.5 2.0 1 23 262 285 262 285 0.96 3 31 8.7e-05 0.0073 16.8 0.8 2 23 292 314 291 314 0.96 4 31 0.0048 0.4 11.3 0.3 1 21 332 352 332 353 0.95 5 31 0.03 2.5 8.8 0.1 2 23 446 467 445 467 0.92 6 31 0.00017 0.015 15.8 0.3 1 23 473 496 473 496 0.97 7 31 0.00012 0.01 16.3 0.1 1 23 556 579 556 579 0.96 8 31 0.011 0.88 10.2 0.7 1 23 585 608 585 608 0.96 9 31 0.065 5.5 7.7 0.8 1 23 621 643 621 643 0.97 10 31 5e-05 0.0042 17.5 0.9 3 23 688 709 687 709 0.96 11 31 0.14 12 6.7 1.7 2 23 770 793 769 793 0.93 12 31 3.3 2.7e+02 2.4 0.0 2 23 802 824 802 824 0.84 13 31 0.97 81 4.0 0.1 2 23 831 853 830 853 0.91 14 31 1.4e-05 0.0011 19.3 1.2 1 23 861 883 861 883 0.98 15 31 0.11 9.1 7.0 0.8 8 23 927 943 920 943 0.84 16 31 0.00022 0.019 15.5 3.3 1 23 946 969 946 969 0.97 17 31 0.006 0.5 11.0 0.4 2 23 976 998 975 998 0.95 18 31 0.00096 0.081 13.5 3.9 1 21 1034 1054 1034 1055 0.95 19 31 0.0033 0.28 11.8 2.0 2 23 1069 1090 1068 1091 0.93 20 31 0.097 8.1 7.2 1.1 1 23 1094 1117 1094 1117 0.95 21 31 0.00099 0.083 13.5 3.5 2 23 1124 1145 1123 1145 0.95 22 31 3.2 2.7e+02 2.4 0.2 2 23 1153 1175 1153 1175 0.94 23 31 3.8 3.2e+02 2.2 0.0 2 23 1182 1204 1181 1204 0.87 24 31 0.24 20 6.0 2.7 2 23 1213 1235 1213 1235 0.96 25 31 2.5 2.1e+02 2.8 0.1 2 23 1241 1263 1241 1263 0.91 26 31 0.24 20 5.9 0.2 1 23 1330 1353 1330 1353 0.94 27 31 0.019 1.6 9.4 0.9 3 20 1384 1401 1382 1403 0.94 28 31 0.34 28 5.5 1.9 2 23 1497 1519 1496 1519 0.94 29 31 2.3 1.9e+02 2.9 0.3 2 23 1526 1548 1525 1548 0.90 30 31 5 4.2e+02 1.8 2.6 1 23 1559 1581 1559 1581 0.92 31 31 1.6 1.3e+02 3.4 0.3 3 20 1590 1607 1588 1609 0.93
Sequence Information
- Coding Sequence
- ATGGAGCAGAGGGAACGCTATCATGAGCTCTGTCGTCTCTGCGCCTCCTATGACGCCGTTACGATGGATATTTTCGGCCAGGAGGGTAGAAACCGACAGCTCGTCGACAAGATTCAGACCTGTCTGCCGTTCAAGATTGCAGAAGATGATCGTCTGCCAAAATGCTTGTGTTATCGTTGTATGTATAATTTGGAGAACTTTTACGACTTCAGGACAGCATGTGTTAACGCGGTGGCTCTGTTGGAAAGGTGCTTACCTCCAAACGAAAGCACAGGTGTTAAGAATGGCTCGAAAAGTCAGAACGAGTCACGCATGGGACTTCtcaaagagaaagaaaatatgcCTATTCTCATCCCAGAGGCACCCATTGTAAACCCAAATGCCGCCCTAGGCACGCCTCCGAGATTAAATTCCGACGGGGAAGCGGATCACGAGATCGAGGAAATCCTCGAACAAGATGGCACGGACGAAGAGGGCGAAATCGAAGACCGAAAATCGGACGAGTACGAGATGGACATGGAGACGAACCCCAGTGATTTCTTGGAAATGACGTCGATGGTTACGGAAGAGAACGATGAGAGCGATTCGAGAAACACACCAACGGCAGCTCGAGAACCCTATCGACGTACGTCGGAACAACACGAAGTCTACGTTTGCTCTCTGTGTAATAAGGCATTCAGCTCGAAGGGGCATTTGTCTCTGCACGCGAGGATCCACGTAGGCGCCGGTGACGTGATCGGCGAAAAAGTTATTACCGACGATCATACTTCTTACAAAAGGCCATTCCAGTGCGACCTTTGCAATAAATCTTATTCAACCGCCAAACATCGTTGGGGCCATGTATCCACAACGCACAGGGGTCATCCGGCCGTAACGTGCAGTTATTGTTCTCGTATCTACTCCACCCGAACGAATCTTGAAGAACATATAAAATCACGCCACGCCGGACTCCCAACACCACCAGAGCTGCCTATGCCTTTCACTCACAATAGATACCAGTGTAAGACTTGTCCAAAGACGTACCTGAACGCTGCGGATCTGAATAAACACAGTCGTTTATGCGCCGGTGATCATCGATTGGACGCGTTGAGCAAAAATGTCACGCGAAAAAGTGGCATCGACGCGTCGGATCTTTCGAGTTTGGATTCCGATGGCGAGAACAAGGATTACAAGACCGCTGAAGcgaaattatcaaaaaatCCACAATTAACGATATTGAAACAGGCCCTCACGAAAGACATCAGTTTAAAACGAGACGCCGAAGACAAATTAAATCGGACACCCATAAAAGTGCCACGAACAGATAACGGAGACATCAGCGTAGAGAAAAAATGGTACTGTGAGGCATGCTCGGAAAGTTTTACAACTGTCGATGCTTTAAAACAACACGAAGTAATACACAAAATAGATAAACCTTTCATATGTGTGTTGTGCAACAAAGATTTTGCTTTAAAATCTTCGTTGAGTAGACATATTTTAACGTTGCATGGTGTGGATCCGACTCCCATTGTAGAGAGCGATAAGTGCTTGAAGAAAAAGATCGATACGCACAACTGCGACGACCGGGCCGAAATTATTTGTAAGCAAGAAGCTCCGCCTTCACCTAAGATGGAAAACGATGGTGATGAAAGTAGTCACGAGAATATGATAGAGATTGAGACTGTCTTCGTTTGTGAAATTTGCACAAGGGACTTTAACGATAGAGCATCGTTATGGTTACATATACGAGCAACGCACAAGGAGTTCGCTGCTTTTGCTTGTGGAGTGTGTTTAAAGATTTGTTCCGATAACACACAACTTTTAAACCATGTCAATATGTACCATGGCGGATCGAAACTTTTGGTATCTGAACAGAGAAGGTATAGCTGTACAATATGCGGTAGGCAGCATGATTCGAGAAAAAAGTTGATCGCACACGTTTCCATCCACAACGTCGATCCTGCTTACGATCCTGCTAATTTCGTACAGTTAAATAGTAattattacaatgaaaattcgaTGAGTATCGAAGGGAATGAGCACCTTATGGACTTCGACGGCGAAGATGAAGAGAAAGTCGACTGTTATATTTGTTATAAGTCATTCCCGAGCGAGGATCATCTTATACGACACCAAAGAAATGCTCATAAGtCCGAACAGATGGCTTTACTGGACGATCCTTCCGGCAACTCTTCAAATGCAAGTGGTACCGGAAACAGGGCACAGTATCATCTGTTTTTTGTCTGTGAGCTTTGCGGTAGTTCTCATTCTAGTAAATGGGAACGCTGGTTACATGTTAGTAGCATGCATAGCAATGAGCCATCCATTAAGTGTGAGCGcaaaaattgtggaaaaatttTTGCAACTAAGACATTACGCAACGAACATGCTCAACACCATCTCATCCAAGGAGAGTCACCTAATACTTGCGAGATTTGCGGCAAATTGTGGGGCAGTCGGGTCGATTATTGGAAGCACGTAATGGGCGTACATTCCGACACAGTACCTTTGATATGTGGAGTTTGCCTTAAAGTATTCCCAGACGTATTACATCTGAGTGGCCATGTAAAAGCGAACCACTGGCCGTTAACGAACGGCGACTTCAGCTGTGATATTTGTGGCAGACCGTATTCGAACAAGTCGAAGATGTCCCGTCACAGAAAAATTCACGGACTCGTGGAAAGCGgtgataattatgaaaatggaCCCCTTCTCGTGAACCATGAATCGGCGAAAGTTGATAACGTGGCGGCCGCACGAATGCCCGAGATGGAGATGAGTTGCGAGTTATGCGCAGATTTGAAGTTTTCCAATTTAGATGACTTGTGCAATCACAGACGTACAGTGCATGGACTGTTTCCCTGTGACCTTTGCAACAAGTGTTATGGCCGGACTTCTCATCTGTGGAAGCATGTAAATCGAGTTCACAAGGGTCACGAGGATGTGACGTGTCGGTACTGCTTGAAAACCAGTGCGTCGAGGGACCACTTGGCAGCGCATATCGCGAAAATCCACAGGTACGAGCCTGACGTTACCAGGAAACAGGACGCCAAGAATCGTCCGAATATGGGTTCTGGCGCTATGAGCGTGAACGCGAATGCGGAGGACTGTGGAATTTTGCATTACTGTGAAAAGTGTAACAAAGGATTCCATAAACGATATCTTCTCCGACGGCACATGAAAGGTTGTCAGAACTATCGGAAAGATCCTGGGGCACTATTGACGCGCTGTCGGGCTTGTGAGAGGATATTTAAGGATCGTGCAAGCCTTCGGAAGCATATCGAAAATCATCACAGCACGTATACATGTCACCTGTGTGATGAAACCGTGACCTCTAAACTAGGTATTATGACACACAATCGTGTCAAGCATATGAACCATCCTGACTTGACTTGCGATCATTGCAAGAAGCTTTTCCGCACAAAGGAGGATCTTGAGTCTCACAAAAAGGATCACAAATATCATGGGACACCTAACGTATGTGATTTTTGCGGGGACACGGTTGAGAATAAACTTAAGTTAAAGATGCATGTACTTTCGTTGCATCGGAACGAGATAGGTGTATCCTGCGGTGTTTGTTTAATTCCCATGAAAGACCCGAAGGACTTGAAGAAACACGTTGAGGATGCACACGAAAGTATTTTATCGAGACCAAATACATGTCAAGTGTGTGGAAAACAATACGCTTCTAAGTGGAAAGCATTCGACCATACGAAGAAGTGTCATGGGAAAGTCTTCAGGACGTGTAAACAGTGTCTAGCGGTATTTACGTCAGACGCAGATATTCGAGATCATTATGAATATGTGCACAACGTTTCTAAAGATCAGTTGCTCGCGTTTGAGTATCCTATGGACGCAGGGTCAAAGGGTGATGGATACGAAGGAGGGTTACCGTTATCTGCAGATATCACAGTGAAAGAAGAACCCGATGATTTGGATGGTTATGACGATGATCCTTGCGACGATGATTCCAACGAATGCGGAAGTCGTTCCATGACAACCGACACTCACGATTGCGAAATGTGTCCAGAAATTTTCCTCGACCGAGAAACACTCGCTGAACACTACAAGAACGTACACAACACCGATCCTAGCAGAATGTTTGGCAAGTTCAAACGCAACAGCAGCGGCGGAACATCATTTAAGAGAAAAGCAAGAACTAACTACGGGTGCGAGAATTGTAAAAAGCAATTCTTCACAAAGACTTCCTATTGGAAACATATAAGCAACTGTATCCGAGATACAGACGCTTTGTCGAATCCTCACCAGCCAGATGAGCAGGGTTCGTACCTTAGAAACAATAACGAGATCAAAAAAGAAGCAATCGACTTAAACATTCCGGATTTCAATCTTTTCGAGGACATTAATTTACAGTTGTCCGGACACAAACCTCTGCCCCACCTTATGCCTATCTCCGAGGCAAAGTTGACCGCAGGaagtggtggtagtggtaagTGTTCGAGAAAAGATTCGCGTAAAGTTTACGACGAATCTACTAATACCGAGTGTACGTGCGAAGTTTGTGGTAAACAGTGGCCGGCTAAAAAACACCTTTGGCAACATCTCATCCGTTTCCATCGCGCGGAAGCCGCGGTAACTTGCGGAGTTTGTTTGAAACTCTGCAGGTCGTACAAAGAACTTGCGGATCACCTCGACGCAGCACACGCTGCTATTCTTTCCTGCGAGGGGAATAACTTCACATGCAAAACATGTGGAAGGTACCACAACGCCAGGAGTAAACTGCTTTTGCATACCAGTATTCACATTAATTACAGTGGCAACTATTGGTGTCAGAAATGTCGAGTCAATTTTGAAAACGAGGCGCAGTTCACGGAACACAAACTTTCCTGCGAGGAATCTGACGTGAACATTCGGCCGAAGAACGACGACGTTAACGAAAAGAGCGGTCCTGTTGAGGATGAAACGTCGATAATGGAAGATAACGAAGAAATGGACTTCCACTCAGAAGCCGAGAGTGATGATAACTCTCATTCACAAGATAGTAATAGCGAGAATTCGGATAATTCGGACAGTAGTTCCAATAGTGACAGTAATGGTAGTTCAAGCGACGAAGACGCTGACGAAGAGGACGATGAAGTTGGCGCTGTAGATCATGTTGACGAAGATGATGATGGagtggaaaatgaagaaggtGATGGAAACGAATCGAACAGCAGGTCGATCGAAGAAGTTGCATACAAATCGGAAACTGATGATATGGAATCTGACGGATCTGAGCCATCCGACGATAATGAACAACATTCCGAGCAGGACGGCATGAACATTAGTTACCATCAGCAGAAAACTCGTGACAGTGAATCGACCGAAGAAACAAACTTCGAAAATTCGCCTGCTATTAAAGTGGATAAGAGCGATTTGGACGAAGTCTCGGATGATGACGAAGGTCCTCCGGTGTTGAGTCCGATGATACCAATCGTAGTTGAAAAAACTGATGAGGAGGACGATATCCAAGATCGGAAGAGTCACGATCTTAGTCCTATAACTCCTTTAAACAATTATCGCCGTAATGAAAAGGATTCTCATGATTTTGCTGAAGACCGTAAAGATATGGAGACAGACGCGGTATCAATTGTGTCTGAAACACAaagaatttatgaaaaaacgTGCAAAAACGTAGACACATCGGATAGGACTCGTGAATTAAATTCGAAACGAAAAGATTCCGCCGGAAGCGATGAAGTATATGAAAGTATCGAGGGGGAGGATGACGATAACGAGCAGCCGGAAGATACGGTTAATCAAAATGATGCAGAATCGATTGACAGATACAGTCAGTTAGGTAGCAGTACAGAAGATTTAGAGGAGGACACACTGGATGACAATTTAGacgaggatatggaagttaATCCTGAAGAAGGTGAGGTGCATGACCTTGAGGAAACTGTGCTAATGGTAACTAATGATTCGGAGGGGAATCCGATTTTAATTCAACAAAACGTGCTTGAGGAATCAGAGGATGCCGAGTACATTTACGATCAGGACGAAAATAGGTATGAAATCGAGGGTTATGAATTGAGTCGGGATGAAAACACGTCAGTTCTGCAATCGGACGACGTAGAAAACGCGTATTCTGACCAAAACGAAAACGATGGGGAGGATCAATACGATGAAGATAAAGCGGATGTGAGTGGCTTGCCAAGGACTAGTGCCAAAATCGAAAAAACTAAAACGTAG
- Protein Sequence
- MEQRERYHELCRLCASYDAVTMDIFGQEGRNRQLVDKIQTCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPNESTGVKNGSKSQNESRMGLLKEKENMPILIPEAPIVNPNAALGTPPRLNSDGEADHEIEEILEQDGTDEEGEIEDRKSDEYEMDMETNPSDFLEMTSMVTEENDESDSRNTPTAAREPYRRTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPFQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRTNLEEHIKSRHAGLPTPPELPMPFTHNRYQCKTCPKTYLNAADLNKHSRLCAGDHRLDALSKNVTRKSGIDASDLSSLDSDGENKDYKTAEAKLSKNPQLTILKQALTKDISLKRDAEDKLNRTPIKVPRTDNGDISVEKKWYCEACSESFTTVDALKQHEVIHKIDKPFICVLCNKDFALKSSLSRHILTLHGVDPTPIVESDKCLKKKIDTHNCDDRAEIICKQEAPPSPKMENDGDESSHENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNTQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPAYDPANFVQLNSNYYNENSMSIEGNEHLMDFDGEDEEKVDCYICYKSFPSEDHLIRHQRNAHKSEQMALLDDPSGNSSNASGTGNRAQYHLFFVCELCGSSHSSKWERWLHVSSMHSNEPSIKCERKNCGKIFATKTLRNEHAQHHLIQGESPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVLHLSGHVKANHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLVESGDNYENGPLLVNHESAKVDNVAAARMPEMEMSCELCADLKFSNLDDLCNHRRTVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASRDHLAAHIAKIHRYEPDVTRKQDAKNRPNMGSGAMSVNANAEDCGILHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLRKHIENHHSTYTCHLCDETVTSKLGIMTHNRVKHMNHPDLTCDHCKKLFRTKEDLESHKKDHKYHGTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDAHESILSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDADIRDHYEYVHNVSKDQLLAFEYPMDAGSKGDGYEGGLPLSADITVKEEPDDLDGYDDDPCDDDSNECGSRSMTTDTHDCEMCPEIFLDRETLAEHYKNVHNTDPSRMFGKFKRNSSGGTSFKRKARTNYGCENCKKQFFTKTSYWKHISNCIRDTDALSNPHQPDEQGSYLRNNNEIKKEAIDLNIPDFNLFEDINLQLSGHKPLPHLMPISEAKLTAGSGGSGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCRSYKELADHLDAAHAAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHINYSGNYWCQKCRVNFENEAQFTEHKLSCEESDVNIRPKNDDVNEKSGPVEDETSIMEDNEEMDFHSEAESDDNSHSQDSNSENSDNSDSSSNSDSNGSSSDEDADEEDDEVGAVDHVDEDDDGVENEEGDGNESNSRSIEEVAYKSETDDMESDGSEPSDDNEQHSEQDGMNISYHQQKTRDSESTEETNFENSPAIKVDKSDLDEVSDDDEGPPVLSPMIPIVVEKTDEEDDIQDRKSHDLSPITPLNNYRRNEKDSHDFAEDRKDMETDAVSIVSETQRIYEKTCKNVDTSDRTRELNSKRKDSAGSDEVYESIEGEDDDNEQPEDTVNQNDAESIDRYSQLGSSTEDLEEDTLDDNLDEDMEVNPEEGEVHDLEETVLMVTNDSEGNPILIQQNVLEESEDAEYIYDQDENRYEIEGYELSRDENTSVLQSDDVENAYSDQNENDGEDQYDEDKADVSGLPRTSAKIEKTKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -