Basic Information

Insect: Hedychridium roseum
Gene Symbol: -
Assembly: GCA_963989215.1
Location: OZ022312.1:9590454-9594989[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 8.9 7.5e+02 1.0 0.1 2 17 60 75 59 76 0.87

2 26 0.47 40 5.0 5.4 2 23 263 285 262 285 0.97

3 26 0.039 3.3 8.4 1.9 1 23 336 358 336 358 0.97

4 26 0.044 3.7 8.3 0.9 1 23 407 429 407 429 0.98

5 26 0.035 2.9 8.6 0.4 1 20 478 497 478 499 0.94

6 26 1.8 1.5e+02 3.2 4.8 1 23 511 534 511 534 0.93

7 26 9.3e-05 0.0078 16.7 0.6 1 23 539 561 539 561 0.96

8 26 0.00055 0.046 14.3 0.1 1 23 598 620 598 620 0.97

9 26 0.00039 0.033 14.7 0.1 1 23 626 648 626 648 0.97

10 26 1.1e-07 9.6e-06 25.8 1.3 2 23 696 718 695 718 0.96

11 26 0.015 1.3 9.7 2.6 1 23 724 747 724 749 0.92

12 26 3.4e-05 0.0028 18.1 0.5 1 23 754 777 754 777 0.96

13 26 8.6e-05 0.0072 16.8 0.6 1 23 784 806 784 806 0.96

14 26 0.32 27 5.5 0.0 2 20 870 888 869 888 0.94

15 26 0.0027 0.23 12.1 0.4 2 23 908 929 907 929 0.96

16 26 8.1e-05 0.0068 16.9 1.2 1 23 943 965 943 965 0.97

17 26 0.00027 0.022 15.2 2.7 1 23 987 1010 987 1010 0.93

18 26 0.021 1.8 9.3 2.4 2 23 1066 1088 1065 1088 0.91

19 26 0.011 0.89 10.2 0.9 2 23 1115 1137 1114 1137 0.94

20 26 0.0018 0.15 12.7 0.1 1 23 1143 1167 1143 1167 0.96

21 26 0.046 3.9 8.2 0.3 1 23 1172 1196 1172 1196 0.91

22 26 0.015 1.2 9.8 0.6 2 23 1203 1226 1202 1226 0.90

23 26 0.02 1.7 9.3 0.1 2 23 1233 1256 1233 1256 0.95

24 26 0.0073 0.61 10.7 0.1 2 23 1263 1286 1262 1286 0.95

25 26 0.0029 0.24 12.0 4.3 1 23 1291 1314 1291 1314 0.97

26 26 0.27 23 5.8 0.2 2 23 1344 1366 1344 1366 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	8.9	7.5e+02	1.0	0.1	2	17	60	75	59	76	0.87
2	26	0.47	40	5.0	5.4	2	23	263	285	262	285	0.97
3	26	0.039	3.3	8.4	1.9	1	23	336	358	336	358	0.97
4	26	0.044	3.7	8.3	0.9	1	23	407	429	407	429	0.98
5	26	0.035	2.9	8.6	0.4	1	20	478	497	478	499	0.94
6	26	1.8	1.5e+02	3.2	4.8	1	23	511	534	511	534	0.93
7	26	9.3e-05	0.0078	16.7	0.6	1	23	539	561	539	561	0.96
8	26	0.00055	0.046	14.3	0.1	1	23	598	620	598	620	0.97
9	26	0.00039	0.033	14.7	0.1	1	23	626	648	626	648	0.97
10	26	1.1e-07	9.6e-06	25.8	1.3	2	23	696	718	695	718	0.96
11	26	0.015	1.3	9.7	2.6	1	23	724	747	724	749	0.92
12	26	3.4e-05	0.0028	18.1	0.5	1	23	754	777	754	777	0.96
13	26	8.6e-05	0.0072	16.8	0.6	1	23	784	806	784	806	0.96
14	26	0.32	27	5.5	0.0	2	20	870	888	869	888	0.94
15	26	0.0027	0.23	12.1	0.4	2	23	908	929	907	929	0.96
16	26	8.1e-05	0.0068	16.9	1.2	1	23	943	965	943	965	0.97
17	26	0.00027	0.022	15.2	2.7	1	23	987	1010	987	1010	0.93
18	26	0.021	1.8	9.3	2.4	2	23	1066	1088	1065	1088	0.91
19	26	0.011	0.89	10.2	0.9	2	23	1115	1137	1114	1137	0.94
20	26	0.0018	0.15	12.7	0.1	1	23	1143	1167	1143	1167	0.96
21	26	0.046	3.9	8.2	0.3	1	23	1172	1196	1172	1196	0.91
22	26	0.015	1.2	9.8	0.6	2	23	1203	1226	1202	1226	0.90
23	26	0.02	1.7	9.3	0.1	2	23	1233	1256	1233	1256	0.95
24	26	0.0073	0.61	10.7	0.1	2	23	1263	1286	1262	1286	0.95
25	26	0.0029	0.24	12.0	4.3	1	23	1291	1314	1291	1314	0.97
26	26	0.27	23	5.8	0.2	2	23	1344	1366	1344	1366	0.94

Sequence Information

Coding Sequence: ATGGACGAGATCGTGGAAATACATAACGTCGAGAACGTTTGCAGACTCTGCCTGACTGTGGATTCTCCGAAATGCTCGATTTTCGGCGATCAGGATTCCGCGGCGATTCCTCTTGTCGCCAAAATACAAGGCTGTCTTGCGATTCAGGTCACGTCCAGTGACAAATTATCTACCCTCATATGTTCAAACTGTGTGAAGAGTGTTAATCAATGGCATGCCTACAAAGAGTCATGCCTCCATTCTCAAGAAAAACTGAATCAATGGCTCGCAAACCAGGTGCAACAAACACCCATGGTTGTTACCATCAAGGAAGAACCAGTAGATTTTGATTTTTGTGAAGATAATGTCCAAGTATTATCTGAAAATGGGGAGTCAGAATCTGCTAGTGTTAAGAGCACACATACCGAGGAAGAAGTTGAAAAGGATATGGGAAAGCAGACAGCAGTGGTCAATGATGTTGATGTATTAAATGTAGATAAAGATAAAAGTTCAAGAATGGATTCATCAGCTATGACCAAAGACACAGATGAGACATCTAAGATAGACTGTCCTGTAACTGTTAAAAGTGAACCTCAGGAGGATGAAGATACAGATTGTACCATAGAGATAGAGTCAGTTACTGGTAGTGAGCTATTGCTCAATCCAATGGCCATAATTCCTGGCAACGATGATAGAGTTATGGAGGCTGATTCTACTCAGAAATCTAGCAAAGCTACCACAGCaaccaaaagaaaattaagaagagGTCCACATACACATTTTAGGGGAACACGAATTTATAAACAGAAATGCAAGATTTGTCGGTTCAATTTACATTCTAAGTATTCTTATTTGAAACATATGCAACGGTTTCATAGTGAAAAACCATGTGATTTAGAAGGTTCAGAGTCCTTTTCtcaagacgaagaagaaacaatAGAAGACTTGGAGGATGAACTGATCAGCATGGAAAAAGATTCGCCTTTAACTCAGGTCCAACAAAATATAATCAGCCAATTGAAAACCTTCTCATGTTATTCGTGCAATCAGACATTTGGAGATCGTAGAAGCACGCTTAATCACATACGCCAGCACATGCCGGATCTAAGACCATACACATGCATCGCATGCTTAACGGAGTTCCCAGACCGTTCTATATATAAGCTCCACTGTGGAGCATCCTTTGAGTGTGCCATGAAGATCGCATTGGTTGTACCAAAACATGGCGTCGAGAAGTATTTCACGTGCAACATGTGCCTCCGACCCATGTCCAATAGAAAGGAACTTCTCAGTCATTTATCGAAGCATTCGGACAAACAGTACGAGGAAATGACTTCTCCATCGCGATCTCCACCGAAGTTGAAACCTATGGCCTCTCTTTCGCCGGTTCCCAAGAATAATACGGTCTCTAAGATCGTTGGACCTTATAAGGGAGGTGATCCCGCCCACAATCACACCTGCGACCTCTGTGGTATGATCTACAGGTACAGACCAAACATGTACAAACACAGAGAACTCTGTGCTCGGTTGCAGCCAGAGACAAGAACTTCATACAGGTGTGTTCATTGCGGTATGACCTTCCTCGTCTTCAAAAAATTCCACAGCCACATTACAACAGAACACAAGAAGAAGGAATTCACTTGCCCGGAGTGTAACGCGAAGTTCCGTTCGCCGAGCGACTACTTGGCGCATCACGAGGAACACCGTGTTGCGAACGGCAACGAGGACAGGAAAAGCAGCGCCAAGGACATGATGTCTCGTAGCCAACTCGGATCTCCCATAAAGGATGACTGGCAGCACAGCGGACAAAAGTTCAGTTGCGCGCTTTGCGGTCAAGAGTTCCCCACGAGAGCGGAGTTGAGCGAACACAGGAACCTTCATTTgaaagtgaaaatatattCCTGTGTGATCTGCCGCAGCATGTTCAGCAGTCCAGGTGCCCTGGAAGTTCATATGAAGGATCACGGTATCGAGGACCCGAGTGAGCGAAACGCCAACAGTTCTTGCGTTGAGTACGGACAGACGGACAAGGAGTTCCAAGATGCGAAATCCGCTGTTAACGTTTCCACGATTTCTGACCCTGGCGTTCCTAGCCGATTAAGCAATCAATGTAGGACTTGCGGCAAGACCTTCTCCAATAGCGCTAACCTCAAGCGGCACATTAGGAACGCTCACGAAGCGAATAGTCTATTCTCATGTTCGAAATGTCCAAGATCATTCAAGAGCCAGGATCTCCACGATCAGCACCAGTTAATGGATCATCGAAGAACGAAAGGTGCATTCGAGTGCCCCAATTGTCCCAAGATTTTCGTCTTTGAAGCGAACTTGAAACATCACCGTGAAAGCGCACACGGTACGATGAAAGGGAATCACCAATGCGACCTTTGTGGTAAGGAGTTCGTCGAGGAATCCTCTCTCAAGATCCACCGGAGCTGGCACAGCCGTGCTAATTCGCGATTCAGTATACTTGAGCCGACTGTCGATAGAAAAACGGTTCCCGAGCAAATCAGCCAAGCCGTCACCTCTACGCCTATCGTTAATTCGGAGAGACCTGCCAGAGCGCGTAAATCGTTCCCGAATCGTCCTCCGGTTCCACAGCAGTCTCAGAAGCAGTCGCAGGGCGATTTGCAGTGCCAGGTCTGTGACGACAGATTCACCGATGTCATGGAACTGAGGGAACACTTGTGGGACGTGCACTGCGCGCGAAATAAACCGGAGAAGAGTTTCACCGGCGATGAACTACAGTGCGAGCTCTGTACGAACGTTTTCCCAGATCACGAAACTCTGAAGCTTCACATGGAATGGCACAAGGCTCATCCAATTCTTGGGGATGTGAAGACACGCAATTTCCCCTGTGATATTTGTGGGAAGATGTACAGCTCGAAAAAAGTTCTTTATAAGCACAAGAAGCTACATAAGGCTAACACGGTCGCCGCCATAAAGTTCCAGTCGCTGGCGAAGAAGCCGGCGAGCAACCAGTATCTCTGCACGATTTGCCGCAAGATTTTCTGCAGTCAACAATCCCTACAGCGACACAGAATCAACATCCACAAAGAGCACAACAGTCCTAAGCAGCAGTCTTCGGCCGCGCCGATCCAGAACGGTTCGCGTACCCCTTCCATTGACGGGCCGAAGCCGAAGAAGATTAAAGTGGAGCTCGACGACGCTCAGTCAATGTCCACAATGAGTATGGCCAACGCCGGTAGGAAATCGGTCACGTGTCACCTCTGCCGGAAGATCTTCCCGAGTATGAGTCTATTGTATAAGCACAAACACGCCGTCCATAAAACACGATGGGGTAAGATCAGCACAAAGCCTGCTAGCGATGACCTGGTCCCTCTGACTGGTGTAAACGGCAAGGTTTCCTGCAACGCCTGCGGCAAGCAGTTCAAGGCTCTCAACAGTCTCCGTCAGCACTTCCGACTGAAGCACAAGAACGCGACGAAGTACACCTGCTCCGTTCCTGGCTGTACCAAGGGCTTTCCTACTCCAATGACTCTGCAGAATCACGAGATGGCCCACAGACGAATGCAGTTCCCGTGTTCCGTTGAAGGATGCGACAGAGTCTTCACGATGCCTTCCTGCCAGAAGAACCACGAGGCCGCGCACAGGAACGAGCCACGTTGGAAGTGTTCTCATCGTGGTTGTAATATGGCGTTCACGAGTCCCACAGCCCTGAGGACCCACGAAGGACAACACCGAACCGAACTGAGCGCCAAGTGCACTTTCCAAGGCTGCACCGCGAGCTTCGCCAGTGCTGCTGCCCTCAAGGTTCACGAAGCGACTCACAGAAGTACCAGCAGATGGAAGTGCAGCATTTTTGGATGTGGAGTTACATTACCTACATCCTCCGCTCTGAAGACTCACGAACAGAGTCACACGAACATGATATATTCCTGTAATTTATGCGACAAGCACTTCTTCAACAGCGAGACGATGGGGCATCACATGACAACAGTGCACAACACCACGTACGAGGCTACTGGAAAGAAAACCTTCCATAGGGAAACGGACCTCAGTACCTACGTTGTTCCTGGAGCAGTAGACGCTACCTGTCCTGGTTGTGCCGTTAGGTACCCGAATAACAAGGCCATGAAGATTCATTACTTCAAATTCCACGAGACCGCCGACTAG
Protein Sequence: MDEIVEIHNVENVCRLCLTVDSPKCSIFGDQDSAAIPLVAKIQGCLAIQVTSSDKLSTLICSNCVKSVNQWHAYKESCLHSQEKLNQWLANQVQQTPMVVTIKEEPVDFDFCEDNVQVLSENGESESASVKSTHTEEEVEKDMGKQTAVVNDVDVLNVDKDKSSRMDSSAMTKDTDETSKIDCPVTVKSEPQEDEDTDCTIEIESVTGSELLLNPMAIIPGNDDRVMEADSTQKSSKATTATKRKLRRGPHTHFRGTRIYKQKCKICRFNLHSKYSYLKHMQRFHSEKPCDLEGSESFSQDEEETIEDLEDELISMEKDSPLTQVQQNIISQLKTFSCYSCNQTFGDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGVEKYFTCNMCLRPMSNRKELLSHLSKHSDKQYEEMTSPSRSPPKLKPMASLSPVPKNNTVSKIVGPYKGGDPAHNHTCDLCGMIYRYRPNMYKHRELCARLQPETRTSYRCVHCGMTFLVFKKFHSHITTEHKKKEFTCPECNAKFRSPSDYLAHHEEHRVANGNEDRKSSAKDMMSRSQLGSPIKDDWQHSGQKFSCALCGQEFPTRAELSEHRNLHLKVKIYSCVICRSMFSSPGALEVHMKDHGIEDPSERNANSSCVEYGQTDKEFQDAKSAVNVSTISDPGVPSRLSNQCRTCGKTFSNSANLKRHIRNAHEANSLFSCSKCPRSFKSQDLHDQHQLMDHRRTKGAFECPNCPKIFVFEANLKHHRESAHGTMKGNHQCDLCGKEFVEESSLKIHRSWHSRANSRFSILEPTVDRKTVPEQISQAVTSTPIVNSERPARARKSFPNRPPVPQQSQKQSQGDLQCQVCDDRFTDVMELREHLWDVHCARNKPEKSFTGDELQCELCTNVFPDHETLKLHMEWHKAHPILGDVKTRNFPCDICGKMYSSKKVLYKHKKLHKANTVAAIKFQSLAKKPASNQYLCTICRKIFCSQQSLQRHRINIHKEHNSPKQQSSAAPIQNGSRTPSIDGPKPKKIKVELDDAQSMSTMSMANAGRKSVTCHLCRKIFPSMSLLYKHKHAVHKTRWGKISTKPASDDLVPLTGVNGKVSCNACGKQFKALNSLRQHFRLKHKNATKYTCSVPGCTKGFPTPMTLQNHEMAHRRMQFPCSVEGCDRVFTMPSCQKNHEAAHRNEPRWKCSHRGCNMAFTSPTALRTHEGQHRTELSAKCTFQGCTASFASAAALKVHEATHRSTSRWKCSIFGCGVTLPTSSALKTHEQSHTNMIYSCNLCDKHFFNSETMGHHMTTVHNTTYEATGKKTFHRETDLSTYVVPGAVDATCPGCAVRYPNNKAMKIHYFKFHETAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -