Hros006880.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hedychridium roseum
Gene Symbol
SCAND3
Assembly
GCA_963989215.1
Location
OZ022311.1:194059-196707[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.2e-05 0.006 17.0 1.1 2 23 331 352 330 352 0.96
2 15 0.006 0.5 11.0 4.1 1 23 358 381 358 381 0.95
3 15 5.3e-05 0.0044 17.5 1.1 2 23 483 504 482 504 0.97
4 15 3.3e-06 0.00028 21.2 1.8 1 23 510 532 510 532 0.98
5 15 0.0067 0.56 10.8 0.2 1 23 538 560 538 560 0.97
6 15 9.8e-07 8.2e-05 22.9 1.4 1 23 576 598 576 598 0.98
7 15 7.7e-07 6.4e-05 23.2 1.1 1 23 604 626 604 626 0.97
8 15 8e-06 0.00067 20.0 1.8 1 23 632 654 632 654 0.98
9 15 0.00087 0.073 13.6 0.2 1 23 660 682 660 682 0.99
10 15 5.5e-05 0.0046 17.4 1.2 1 23 688 711 688 711 0.92
11 15 1.8e-05 0.0015 18.9 1.3 1 23 717 739 717 739 0.98
12 15 0.00011 0.0096 16.4 4.7 1 23 745 767 745 767 0.98
13 15 3.3e-06 0.00027 21.3 0.2 1 23 773 796 773 796 0.96
14 15 1.2e-05 0.001 19.4 1.0 1 23 802 824 802 824 0.96
15 15 3.5e-06 0.00029 21.2 4.5 1 23 830 852 830 852 0.99

Sequence Information

Coding Sequence
ATGCTTAAAAGAGTCTTATACAATGGTAAGCTTTGTCGCATAATACAAGAAGTACATCTGGTTATGCTTCCTCTTTTAATGTTGCAGACCTTGGAAACATATTCACCGAGCGAATCATGTTGTAAATATATAGGAAAGCAAGatgaaaaaatggaagaaacaGCAACATCTGAGAAAGTGAAGAACCATATGAGAGGTAGAGCTCAGATCGATCTCTTTGAGATACAATTACAGCAAAGCCACGAGAGCAAGCGCTTCTTTGTTTACGAAGATCTGCTTTCCAAATTCATCGTTCTTCAAGCTGTTAATGAAGGCACTGTACAGGAAATAGCATTAAAGTTGCTAGAtctttttgcaataattgGAATCCCAACAATCCTGCAGAGTAATAATGGACGTCAGTTTGCTGAGCAAATTGTCCATGAACTCCGTTATCTCTGGAAAGAACTTGATATCCTGCACGGAGATATTACTGtatatgataaaatgaaacGGGATATTAAAAGCATACTTGAATCATGGGTAACTGAAAATCCAACAAAAACATGGTTTGAAGGTTTGAAATCTATCCAGATTCACCAAAATTCATTGGATCATTGGCAGAACGGTAGAAATCCTTCTGAGATACTGCTTGGAAGTAATTTCTTTGAAGAGTATATAAAACGCGAAATCACGGATGATATATGGTCTGAAGAAGAGTGGAGTGAACGTCTCCCCATTATAAACGGCAATAGTATTTTCAAAGAGGACTCGGATTTATCGGAACAGTCACTCAAGGAATACGAGAGTAACACGAAACTCAGGGAAGACAGCAGTATAATGAGCGACACGGTTTTAGGAAAGTTCTCGCACAAAAATGATTCCAAGCCCAACGAAGATATTGATAACTCTCAAGCAATAAAAAACGGGAGGAAAGACGTAGCagaagaaacagagaaagaacTAGAGAATGCTAATGAAGCACAATCGCAGGATAATGGTCAATCcctaaaatgtaattattgcccgaaaaaatatatgaagatAGGTAATTTAAGGAATCATATGAAAGATCATCAGAATGATCGAAGACACCAGTGCTTGCGGTGTGACACAACATTCCGAAGCTTAAATTCGTACAAAATGCATTTACGAGACTTTCatgaaaaacaaggaaaacaagaaaaacaagaaaaacaagaaaaacaagaaaaacaagaagaagaagagggaggagaggaaCAATCGAGTGAATGTAGAAGAGGGGGCAATCGCAATTTGAAAAAGGCCGCATCCGAAGGAAGAGCTTCAATAAGAAATGAACGTCTTTGTGAAAGTACAAACAAACCGAATGGTGATTCATCGACAATAGATACTAGACCAACGGAAGACGTCCGGGTTTCTAAGAAGACATGTCGAAATGTCAGTAAGAAAAATACTTGGGCAGCTAAAGTGAACGGAGGGCTAGAATGTGTGTACTGCAGGCAAAAGTTTAACTTCCCGAGCGTATTGAAGAGGCACATGCGGTCTCATACGAACGAACGACCATACGTTTGCGAGATCTGCAACAAAAGCTTTAAGCAACTGGGTCACCTAAGTCAGCACTCGTTAACACATCGGGATTACCGGTCGTTTCGGTGCATGGCCTGTGGAGTTAAATTCGAGTCGCTGGATGCTCTGAAAATCCATTCCCAGAGTCACAAAGACGGCAAGGATGCATTGGGATCAAAGGATATTTATCGGCTCTTTGAATGCGACAATTGCAAGAAGGTTTTCACGACAAAGAGTGTTCTGGAGAGGCACATATTCACCCACACTCACGAGCGGCAATTCGCTTGTAAAATTTGCGGTAAACGGTTTAAGCAGGCAGGTCACGTAAAGTCCCACATGCTGATTCACACCGGAGAACGGAAGTACGAGTGCACAGTTTGTTCCAAGAGATTTAGTCTCTCGAATTCCCTGAAGAAGCACATGTACGTGCACAACGGCGAGAGACCTTACCAATGCGATATGTGTGGCGCAAGATTCCTAGAGAGGAGAAATCTCAACGGTCACATTATGACACACACAAACGAACGGCCCTTTTGCTGCAAAATCTGCGGGAAGCGCTACACTTTGGCAGATACATTGCGAAGACACGTGAGTGCGGCTCATGAAGATGGACGGACCTATCAATGCGAAATCTGCGCGAAAATGTTCAAGCAACTGGCACATCTATCGGTGCACAAAAAAGTTCACAACGACGAGCGTCCGTTCCAATGCCACCTCTGCGACAAGAACTTTAAACACaagaacgtgttaaaatcgCATCTGGCGATACACGCAAATGTTCGACCTTTTGAGTGCGACATTTGCAAGGCCACTTTTGTCCGCAAAACGAATCTTCAGACGCACATCGCCTCGGCGCACATGAATGAACGGCCCTACTCATGTACGATTTGTGACAAGAGGTTTAAGCAAATCAGTCATCTCAACGGTCACGTTGTCGTGCATAGCAATTCGATGCCCTATCAGTGCGATTTTTGCGATAGACGGTGCAATAGACTCGATAATTTGAAAAAGCATATGCGTCTTCACACCAAGGacaaagaataa
Protein Sequence
MLKRVLYNGKLCRIIQEVHLVMLPLLMLQTLETYSPSESCCKYIGKQDEKMEETATSEKVKNHMRGRAQIDLFEIQLQQSHESKRFFVYEDLLSKFIVLQAVNEGTVQEIALKLLDLFAIIGIPTILQSNNGRQFAEQIVHELRYLWKELDILHGDITVYDKMKRDIKSILESWVTENPTKTWFEGLKSIQIHQNSLDHWQNGRNPSEILLGSNFFEEYIKREITDDIWSEEEWSERLPIINGNSIFKEDSDLSEQSLKEYESNTKLREDSSIMSDTVLGKFSHKNDSKPNEDIDNSQAIKNGRKDVAEETEKELENANEAQSQDNGQSLKCNYCPKKYMKIGNLRNHMKDHQNDRRHQCLRCDTTFRSLNSYKMHLRDFHEKQGKQEKQEKQEKQEKQEEEEGGEEQSSECRRGGNRNLKKAASEGRASIRNERLCESTNKPNGDSSTIDTRPTEDVRVSKKTCRNVSKKNTWAAKVNGGLECVYCRQKFNFPSVLKRHMRSHTNERPYVCEICNKSFKQLGHLSQHSLTHRDYRSFRCMACGVKFESLDALKIHSQSHKDGKDALGSKDIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFACKICGKRFKQAGHVKSHMLIHTGERKYECTVCSKRFSLSNSLKKHMYVHNGERPYQCDMCGARFLERRNLNGHIMTHTNERPFCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDICKATFVRKTNLQTHIASAHMNERPYSCTICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKDKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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