Hros010201.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022314.1:3332490-3336813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.12 10 6.9 3.0 1 23 373 395 373 395 0.97 2 19 0.028 2.4 8.9 0.6 2 23 430 451 429 451 0.95 3 19 0.00016 0.013 16.0 1.1 1 23 516 538 516 538 0.98 4 19 0.0034 0.28 11.8 0.6 2 23 542 563 541 563 0.95 5 19 3.2e-06 0.00027 21.3 0.7 2 23 614 635 613 635 0.97 6 19 1.1e-06 9.2e-05 22.8 1.1 1 23 640 662 640 662 0.95 7 19 0.00041 0.035 14.6 0.7 1 21 668 688 668 692 0.92 8 19 0.0004 0.033 14.7 3.4 2 23 764 785 763 785 0.95 9 19 4.2e-05 0.0035 17.8 4.1 1 23 840 862 840 862 0.97 10 19 0.00027 0.023 15.2 0.7 1 20 867 886 867 888 0.94 11 19 0.00074 0.062 13.9 0.4 2 23 899 920 899 920 0.97 12 19 2.8e-05 0.0023 18.3 0.6 2 23 959 980 958 980 0.97 13 19 2.5e-05 0.0021 18.5 1.6 1 23 985 1007 985 1007 0.95 14 19 0.00014 0.012 16.1 2.9 1 23 1013 1035 1013 1035 0.98 15 19 4.5e-06 0.00038 20.8 0.4 1 23 1051 1073 1051 1073 0.95 16 19 3.7e-07 3.1e-05 24.3 0.6 1 23 1079 1101 1079 1101 0.99 17 19 4e-05 0.0033 17.8 0.2 1 23 1107 1129 1107 1129 0.97 18 19 0.00015 0.012 16.1 4.1 1 23 1135 1157 1135 1157 0.96 19 19 0.01 0.87 10.2 0.4 1 20 1163 1182 1163 1184 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAACACATACGTCCGATCCCCCACAAAACGAGGAGAGCATTGTCTCCTCGGTGGAAATATGTCGCGTATGTTTACTCGAGAATCCAATGATGCGGGATCTTTTCTTGGACAGTGAAGTTTCTTCCCTGTCCGTCAAGGCGATGAGCTTCACCAATGTTAAGatGACCCCAGGTGATGGTTTACCTGCAAGAATATGTTGTTTATGTGCTGACAAACTTGAATCTGCCtatgaatttaaattacaaGTTGAACAAGCGGATAGTTTCCTcagagaaaaatatgattCATTGAGTCCCATGaaggaagaattatttttcaatgaggTTGAAGTACATTTAGAAGGTGATAGGAATGAAGGAATGAGAGAAATTAATGTTCAAGCTCACTATGATTCTGCAAGTGAGATTCTGAcgcaagaagaagaaaatgacaaaTCACTTCTGAAAGATCAGCTGGTACTTTTACAGAAGGTTGAAAGTTTTGCAGTGGAGCATAATAACCTACAGGAAGaTGAGGTTAATCTCCAGTCAGTAGAACAGACAACTAACGAAGTGATGGGAATACCAGAAGATATTCAGAGTCAACTACATAATGCAGAAGAAAACATTGTAGAAGAATCTATGAGCATAGAAGGAACTAAGGAATGCTCCAAGGAAGATAGTACAAATGAATCTGGTACTGATGTCATACCAAATGAAGAACATGATTACATTATGCAGCAAGAATGCGAAATTCCAAGTGAACAGCAACTGTTACCTGCAGAATCTTCAGCATGTGATCCATCTCAAATGCAGTATTCTGATTCATTAACACAAGATTCTGAACATGTACAGAGTCATCCAGGAGTTGAAGGAGATATGGAAGGTatggaagaggaagaagaaatagaGGAAACAAAAGAATTTATACAATCATGCGTGGTGAAAGAGGAAGAACAAATTAAAGAAGACTCTTCTCCGAATGAAATGAGAAGAAGTAAACGTAAATCTGCTCGGCGAACATTCGCTGCCGAACGAGATTCtgacgaagaaaattatttcgaaaaccTGAATCTCAGTTCTAGATTAAAGAAAGTACAAGCTGATAAATCTGAGAGGGTTTATTACATGTGTTACCTCTGTGATAAACAGTTCCTGTCGAAGAGCATTCTGAAGGAACACATGCACTCACACGAGGAAGTTAGAAGGACATTGTCGCTGAAAAAAACCCCGGAGAAAGCGCAGAAAACACCTACAACTTCTACGAAAATGCCACCATCTGGGAAAAAAGCTAATAAATGTCCTTACTGCGGTAAAGAATATCTTTACATTATCTCGTTTAATAAACACTTGAAACAACatgagaaggagaaggaggagccTATGCCTCTAGAAGTATCTTTCGAGGAGGATGATCAGAGTTTAGATTTcgacagcgctgccaatttacAGTATTCTGATTCGGAAGGCAACAAAAGAACGGGCGACGAAGACGAACATGACGGCGATGACGGCGATAATCGAGTGGTTAAAAACAAGATTCACTCCGATACATATTCGTGCGAGAAATGTTTGGAAAAGTTTCCGACTAAACGAAGTTTACGGAAGCATGCCATCACGCACATTAATCTGAAATGCAGCGTTTGCGAAGAAGAATTCGAGACACTGGAAAAACTTCGAAACCACCGCACGCAACACGTTATCGAAGGTGTGCTGACGGAAGAAGATTTGGAAAAGGAAATTCGGGATATTGGTAAAACGGAAAACTGCGAGGAAGAAGATAATGAAGATGACGAAAATGAGGACAGTGATAACTGTCACGAAAGAAGTACAGATGTGAGAGATCTGAAATGCCCAGATTGTTCGGTGTCATTTTCTGATAAAAAGTCGTTCGCTAAACATATGGAGACTCATTCTGGGACCAAGTATAGTTGCAAAATTTGCGGCCAGCAATTCTCACGGAAAGATCAGTTAAGAAGGCACGCAGAACAGCACAGCAGGGTAAAAACGTACAAATGTACGCAATGTAACAAAACTTTTGGAAACGAGCTTACTTTACGCAACCACTTGATAGCTACTAATCACAAGACAATCGTACATGGACAGGAGTACGATCCTAATAAACGCATAAAACGCGTAGCTGCAAAAGCTGCGCAAAAGATTATCGACAAGATTAAAACCGAAGATGGCCTGGAGGATTATGATGAGGGAGATGACAGTAACGACGATTGTGTCGAATTCAGCACGAGTTATAACCGTAAAGGATTaccaaagaaatttaattacaaaaagGATTTAGAATGTGCGACATGTAACAAACGATGTAGTTCAAAGCAGTCTCTGACGAAGCACATGGAACAGCACGTGAAAGATGAAGAAAAGGCTATAAAATTAGAGAAGCCTGACAAGCAGAAGAAAATGgcggaaaaaaaagaacatgGTGTGATGAGCACCGAGATGAaggatgacgatgatgacgatgataaTTCGGACTTTGAAAGTGGCTTAGATTGGCCGATGGATAACCATGAATGTACGATTTGTAAGAAGAGGTACAGCACGAAAAAATCATTGCTGCGCCATCAATTGCTACATGAGGAACCGAACTTCGAGTGTGATATTTGCAATGTAAAGTTTTATCGTAAGGACAAGCTGAAAGCTCATTACGATAAATGCTCGGAGAAGAATCCAGATCAGGTAAGAAAGTGCAATATTTGCGGGGACAGTTTTGAGAATAATGAGATGCTAAAAGAGCACAGAGCTAAGCACGTGACGGAAGGTATATTGACGGAGGAAGACCTCAGGGATATCGAGCCACGACCGGAGGAAAAGAAACCCGGTCAAAAAGTTGCCAGGAAACGAAGAACGGATATCGTAGGTCTTGAATGCACGGAATGCAACAAACAATATACTTCGCGGAAGGGTCTTCTGCGACATATTCAAGTACACGAAGGTAAAAAGTACCTTTGCGACATTTGCCCGAAAAAGTTCTACAGAAGAGAGCATCTCAAGATCCACGTTGCCAAACACAACATGATCAAACCGTATAAGTGCACGCGTTGTACGAAACGATTCATCAAGGAAGAACAATTGACGAACCATCTGTCGAAGCACGACCGGACTTTCAAGAAGAATAAGGAGACTGACAGCTCGAAGAGATTCCTCTGCGAGATTTGTTCCAAGAGCTTCACGCAATCGACGACCCTCATAGCTCATCTAAGAGCCCACAATGGCATAAAGCCGTACGTTTGCGAGGTTTGTTCGAGACCTTTCACGACAAATGCGTATTTGAAAATGCACATGAGGACGCACACGCAGGAGAGACCTTACATTTGCCAGTACTGTTCGAGAGCGTTCGCCAGAGCAGATACCCTTGCTAATCACTTGACCTCGCACACGGGGGAGGCCAAGTATCACTGCAAGTACTGCCCGAAGAACTTCAGACGGTTGAAGTCCTTGAAGGAACACGTCTTCATACACACGGGCCAAAGGCCTTATGCCTGTCCTACTTGCGATCGTCGGTTCAATAATAACGGCAGTCGTTACGCTCACAGCAAACGGTGCAAGCAGAACTTTTTACAGAATCAGAACCGTCAACCGCAGCCAATAGCCCAAGTGCAAGCTCAGCCTCAGCAAAGGGTCCAACAGACGCTGGCTCAGGCCCAAATCGTTAAAGCTCAGAACATCAAAACCATCACAATCGCGAGACAAGCGGAACCGATAACGGCGCAACAAGTGATGCAACACCAGGAAATATTGATGCCCCTAATCCTGCCACTCACGGTCACTCTCACTGACGTGGGAGAAGAAGTGATTCTTCCGGAAGGCACCAAGATATTCACCACCACTTAA
- Protein Sequence
- MDAVETHTSDPPQNEESIVSSVEICRVCLLENPMMRDLFLDSEVSSLSVKAMSFTNVKMTPGDGLPARICCLCADKLESAYEFKLQVEQADSFLREKYDSLSPMKEELFFNEVEVHLEGDRNEGMREINVQAHYDSASEILTQEEENDKSLLKDQLVLLQKVESFAVEHNNLQEDEVNLQSVEQTTNEVMGIPEDIQSQLHNAEENIVEESMSIEGTKECSKEDSTNESGTDVIPNEEHDYIMQQECEIPSEQQLLPAESSACDPSQMQYSDSLTQDSEHVQSHPGVEGDMEGMEEEEEIEETKEFIQSCVVKEEEQIKEDSSPNEMRRSKRKSARRTFAAERDSDEENYFENLNLSSRLKKVQADKSERVYYMCYLCDKQFLSKSILKEHMHSHEEVRRTLSLKKTPEKAQKTPTTSTKMPPSGKKANKCPYCGKEYLYIISFNKHLKQHEKEKEEPMPLEVSFEEDDQSLDFDSAANLQYSDSEGNKRTGDEDEHDGDDGDNRVVKNKIHSDTYSCEKCLEKFPTKRSLRKHAITHINLKCSVCEEEFETLEKLRNHRTQHVIEGVLTEEDLEKEIRDIGKTENCEEEDNEDDENEDSDNCHERSTDVRDLKCPDCSVSFSDKKSFAKHMETHSGTKYSCKICGQQFSRKDQLRRHAEQHSRVKTYKCTQCNKTFGNELTLRNHLIATNHKTIVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEGDDSNDDCVEFSTSYNRKGLPKKFNYKKDLECATCNKRCSSKQSLTKHMEQHVKDEEKAIKLEKPDKQKKMAEKKEHGVMSTEMKDDDDDDDNSDFESGLDWPMDNHECTICKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLKEHRAKHVTEGILTEEDLRDIEPRPEEKKPGQKVARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNQNRQPQPIAQVQAQPQQRVQQTLAQAQIVKAQNIKTITIARQAEPITAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -