Hros015100.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- -
- Assembly
- GCA_963989215.1
- Location
- OZ022320.1:929312-930055[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-08 2.9e-05 23.8 0.0 1 40 12 51 12 56 0.89 2 2 5.1 3.9e+03 -2.3 0.0 17 23 136 142 126 143 0.70
Sequence Information
- Coding Sequence
- ATGCCTCCAGTCAAGGGTTGCTTTAGAAATTATTCCGAAGAGGCGATGAAGGGAGCCATTGAAGATATCCACTTGCACAAAACTGCAATAAGGGCTGCGGCACGTAAATTTGGCGTTCCACGAATCACTCTCAAATACAAAGTGGAAGGGAAATCACCAATGGAGAGAAAAATGGGACCTCCTCCAGTTTTAAATCAAacagaagaaaatgatatcCGTCAATGGATAGAAAAAATGGCCGAGGCTGGTTTCCCAGTTACAGTCGAACAACTTGTAACTAGCATCCAACATTATATTCAAGACATAAAACGTGAAAATCCGTTTAAAAATTACCGTCCTGGTAACAGCTGGGTAAAGGGTTTTTTTAGTAGAAATCCTACAATATCAAGAAGGGTGGCACAAAACCTAACAATTTCACGAGCGGCAGTCACCAGTGATAATATACTCAATTGGTTTTCTGAAATAAATGACTACTTGAAGAAGCACGATCTTGAGACAATCTTGGACGACCCATCGCGGATTTTCAATTGCGACGAAACGGCATTCTTTTTAAATCCCAAGGGTAACAAAGTGTTGGCGAAAAAGGGGTGTAAAACTGTTTACCAACAAGTTAATCCAGATGAAAAGGAGTGTGTGACGGCATTATTAACGGGCAGCGCCAGTGGTGTAGTTGCCCCTACAGTAGTCTTATACAAATACAAACGTATACCCCACGAAATTGCTGTCAATTTTCCCCAAAAATGA
- Protein Sequence
- MPPVKGCFRNYSEEAMKGAIEDIHLHKTAIRAAARKFGVPRITLKYKVEGKSPMERKMGPPPVLNQTEENDIRQWIEKMAEAGFPVTVEQLVTSIQHYIQDIKRENPFKNYRPGNSWVKGFFSRNPTISRRVAQNLTISRAAVTSDNILNWFSEINDYLKKHDLETILDDPSRIFNCDETAFFLNPKGNKVLAKKGCKTVYQQVNPDEKECVTALLTGSASGVVAPTVVLYKYKRIPHEIAVNFPQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454003;
- 90% Identity
- -
- 80% Identity
- -