Hros013839.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- lola
- Assembly
- GCA_963989215.1
- Location
- OZ022318.1:4944499-4948823[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-09 7.4e-06 25.7 0.1 9 40 396 428 395 433 0.87
Sequence Information
- Coding Sequence
- ATGGAAGACGATCAGCAATTCTGCTTGAGGTGGAACAACCACCAAAGTACATTAATACAGAATTTCGACACACTCCTGGAAAGTGGCACATTAGTGGACTGCACTTTGGCGGCGGAGGGGAAATATCTAAAGGCCCACAAAGTTGTCCTCTCCGCCTGCAGTCCCTACTTTGAGGGCCTCTTGAGTGAACACTACGACAAACATCCAGTGTTCATACTCAAGGATGTTAAATTTAAAGAACTGAAAGCGATGATGGACTACATGTACAGGGGAGAAGTCAACATTTCCCAAGACCAATTAGCTGCACTTTTGAAAGCCGCCGAATCTCTTCAGATCAAAGGTCTTTCGGAAAGTAAAACAGGCGGTGGGAGCGGCACTAAAACAGACTCGAGGCAACAAAAACCACCACCAACAATAACATCAGACATTCCACATACGTCTTCCGGCCTTACAATAGAAAAGAACAGTAAAGTTCCTAGGCTGAATTTAGCACAAGGTGCGGTGAGCGACCTGCCTGAAGATTCTGCGAGTCCTCAAGTATCGAAAGGGCTCTCCTCGAGGGAAGGTTCACAAAGCCCCATGTccaggaaaagaaagaggttTAGAAGAAAAAGCGTTGGGGATGATAACTCTGTAGAAAACCATGAGGCGTCGAACTCGAGTGACATGCCACAACAAATGGGCGTGCCAGCGCTCGGAATTGCACCTGTTGCGGACGAGAAAGTCATTTCGGATCCCACGGATTCTCTCGGCAGGTCAACACTTGTAACGCAATTGACGAAACCCGCCGACGAGATGTTACAGTTGCCAATAGAAAAACCCGAGCCTAACGATAGCCTCATTGAGCCAAAGTCTGAGTACCTGGAGGACCCCGAGGAGAGCGTAGAGGATCTCACCTTAGATGACGATATGAACGACCTTAATGACATGGAACAAGATAATAATAGAGCAGGCCCGTCGCACGATCCTTCCCAACATCCTGGTGGGGGGGCGGGAGCGCGGTCTCGGTCGAGAGGGAATTCGGGTGTCAGTGGTGGCGGTGCCCTCTGGGCGTCCCATTTCCTCGATTGTAAAAAAGGCCCGAACACGAGATGGCCACGACCGGACGTTGACGTAGCCGCGTTGCTTAAGTCGCTGGCGAACAAGCAGGGCCGAAAGTATAGCTTAGACTCGGTGAAAATGTCGCTGGAGGCGATATTGCAGCAGGGTGTTAGCACCACTCAAGCCTCCGAAATGTACGGCATTAATCGTTCGACTTTGCAATTCTATCTGAAAAAGTTGAACGTCGTGCGACGAAGGTGGAGACAACAGCCTAGCACCCTGGTGCAGCCGAGGCAGTCTTAG
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGGGSGTKTDSRQQKPPPTITSDIPHTSSGLTIEKNSKVPRLNLAQGAVSDLPEDSASPQVSKGLSSREGSQSPMSRKRKRFRRKSVGDDNSVENHEASNSSDMPQQMGVPALGIAPVADEKVISDPTDSLGRSTLVTQLTKPADEMLQLPIEKPEPNDSLIEPKSEYLEDPEESVEDLTLDDDMNDLNDMEQDNNRAGPSHDPSQHPGGGAGARSRSRGNSGVSGGGALWASHFLDCKKGPNTRWPRPDVDVAALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPSTLVQPRQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418424;
- 90% Identity
- iTF_00773903;
- 80% Identity
- iTF_00773903;