Hros003748.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- ttk
- Assembly
- GCA_963989215.1
- Location
- OZ022307.1:9684647-9686487[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-14 4.6e-11 42.3 0.1 1 43 372 414 372 416 0.94
Sequence Information
- Coding Sequence
- ATGGACACCTCGTCGCAACACTACCGCTTGCGATGGAACAATCATCGGTCGAACCTGCTGACGGTTTTCGAAGAATTGCTGGAGAACGAAGCTTTCACGGACGTGACTTTGGTCGTGGAAAATGGCGTTTCGGTGAAGTGCCACAAAATGGTCCTCGCCGCCTGCTCCCTGTATTTCCAAAACCTCTTTATCACCCTGCCGTGCAAGCACCCGATCATCGTGTTCAAGGATGTTAAGCACCGACAGATAAAAGCGATCCTGGAGTACATGTACCGCGGTGAGGTGAACGTAAAACACGAACATCTGCCCAGCTTGCTGAAGATCGCGAGAATCCTGAAGGTGAAGGGTCTCGTAGAGCAGAACGGCGTTGTCCCGAGAAACatcgaagaggaggaagaggaggaggaggaggaggagggggtggaaaCGACAAGTTCGCCACCACCAGCTATCAGCACCAGCACTGCGACCAGCAGCAGCGCGGCTCAGAGTTCTGCACACGCGAGCATTTCGCCTGGTCCGCATTCCACGGAAAATGTCTACAATTACATGTACGGGAAACACCCTCTCGTGGACGGGGCTCATCTTCGTCGCGAACCAACCCCCGAAAGCCTGCCTTTACACATGTGGCCGATATCCGCCGGTCTTCCCCTGACCCAGCACCACCCATCGACACATCGTCAGTCAATTCTCCAGTCTCAGCGATCCGTCGGTTTTCCCCGAAGTTTCGAGGAAGACTACGAGCCACCCCACGCGCCTTGCCTCAAGAGGAAGTTCCCAACTTTGCCCCTAAACCGCGACACACCAATCCTGCGGACGGTTCTCGGACAGGGTCACGCGGACAGTTCCCAACCGGTCCCACCTCTGCGTCCCGATAGTCGCGACAATAACTACCGTGGAAGTGGAAGCGGTTCGTCCCACGAGGTCGACCGACGTAGCAGCACTGATCGGTCTTACGGCAGCGAACCGGCCCACAGTTCTCATCTTGAGGCCTCGATggccgacgacgaggagaagcAACCATCCCCGCAGTCCTTCACCGGAGATTCGAAATCAGGTGCAGTCGGTTATGGTACGAATCAAAAACCCGAATGGAAGAGATACAAGCAATACACCCGTGAAGACATGATGTCGGCCATCGAAGCGGTTAAATCCGGCATGAGTGCTTTGCAAGCTGCGCGAAAATACGGCGTACCCCCGAGAACGCTTTACGACAAGGTCAAGAAAATGGGCATCACGACAACACGGCCCCTGAAACGCGGAAGCAATGGCAGCGGGGCCTGTTTCCCTTACGGAATTGGAGGCAATGCGAACGGATCTATCTACGGCAGTGGCTATTACGACGCAGAGGCTGAAAATACCCCCACGGGCGTCGCTCTCGAGAATTCTGTTCCGGCAACCACGGAATCGACTTACGTCAAATGGAAGGACGTTCCTGTGGACACAGGGCATCGATTCGTCGAACCGCCGAGTCCTCCGCCGGTTCATCAGCTCGAGAAACAACAACccgaagacgaggaagaggaagaggaagaagaggatcAGGTCGAGGATTTGTCCGTCTCTCGCAAACCCGAGGTTGGGGTGATTGTACCCCCTAACGCTGTTGTCAAAGAGGAAAGTAACGTTCCCTCGGAGAACGCGGGTAACAATTGA
- Protein Sequence
- MDTSSQHYRLRWNNHRSNLLTVFEELLENEAFTDVTLVVENGVSVKCHKMVLAACSLYFQNLFITLPCKHPIIVFKDVKHRQIKAILEYMYRGEVNVKHEHLPSLLKIARILKVKGLVEQNGVVPRNIEEEEEEEEEEEGVETTSSPPPAISTSTATSSSAAQSSAHASISPGPHSTENVYNYMYGKHPLVDGAHLRREPTPESLPLHMWPISAGLPLTQHHPSTHRQSILQSQRSVGFPRSFEEDYEPPHAPCLKRKFPTLPLNRDTPILRTVLGQGHADSSQPVPPLRPDSRDNNYRGSGSGSSHEVDRRSSTDRSYGSEPAHSSHLEASMADDEEKQPSPQSFTGDSKSGAVGYGTNQKPEWKRYKQYTREDMMSAIEAVKSGMSALQAARKYGVPPRTLYDKVKKMGITTTRPLKRGSNGSGACFPYGIGGNANGSIYGSGYYDAEAENTPTGVALENSVPATTESTYVKWKDVPVDTGHRFVEPPSPPPVHQLEKQQPEDEEEEEEEEDQVEDLSVSRKPEVGVIVPPNAVVKEESNVPSENAGNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00773915;
- 90% Identity
- iTF_00773915;
- 80% Identity
- iTF_00773915;