Hros014983.1
Basic Information
- Insect
- Hedychridium roseum
- Gene Symbol
- ttk
- Assembly
- GCA_963989215.1
- Location
- OZ022319.1:7588810-7590995[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-07 0.00055 19.7 0.0 2 39 233 270 232 275 0.86 2 4 2e-11 1.5e-08 34.3 0.0 5 39 286 319 283 326 0.85 3 4 0.28 2.1e+02 1.8 0.0 21 34 353 366 339 371 0.80 4 4 1.6e-11 1.2e-08 34.5 0.2 5 42 398 435 397 438 0.92
Sequence Information
- Coding Sequence
- ATGGCCGACGTAAATGAAGATACTGATTGTGTCGATGGTGAGAGAAGCAGCAGCTACTGCTTCAAGTGGCATGATTATCGAAATCACTTATCAGCTGTAATCCGACAACTTTTTGAGGAAGATTGTATGGTGGATGTGACTCTGTCGGCTGCGGGTGAACGTATACATGCTCATCGTATTGTGTTATGCGCATGTAGTCCATTATTTCAGGAGGTGCTGGGGCAAGTGAATGAGGATCATCCCACGATAATATTGACTGACATATTATTGCGTGATGTAAAATCTATTATTGAATTTGCGTATCATGGTGAGGTACGTGTGCCTGTGGACAACATTGAAAGCCTGTTGGACGCAGCACGATCGTTGAAGATTTATGGTCTAACTGAGGTTGACGACATTCCTGATTTACGTTTCACCCCTGAGAATCTTACAAAGGACGAGGACCGTGACTTGTCTGTGGATCGTTTCGAGAGTCATTCTATTGCGTACGAGGAAAGACCCATTGTCGCGTTAGAAAAAGCGTGTGAAAACCAATCTTCGCGGATGCATTGTCCGTCGACTCAAAAGTGCACTGGAGAACCGGCGGACTCTTTCCTCGGATCGGCCATCGCCGATAATGGAGTTGAGAAGCTGATGATCGGTAACAACAGCAGAAAACGCGGTAGGCGCGAAGCGACAGGGAAGAGGGATTACAGCGAGGACATGTTGGTCTCCGCAATAAACGACTTACGCGCGGGACAGACGTTGATCGAAGCATCTACCAAGCACAACATTCCTCGCTCGACGTTATACATGCGAGCCAAATCATTGGGCATACGCTTAAATGCGTCCAGAAACGAATATCCAGCCGAATGTATGAAAGCAGCGATTGATGCAGTGATTGGGGGATCGAGCTTGCAACATGCGTCGGAAATGTTCGGTATACCCAAAACGGTGCTGTGGAGGCGAATACAGAAAGAGGGTTACCAAATTCTACGATCGGATATGAAGAGGACGTATGGTACAGAGAACAGGGAGGCGGCGGTTAAGGCTCTTGAGAGGGGAGAGAACCTAACGAAAGTCGCTCTGGAATTTAAGATTCCAAAGACTACGCTGTTCAGGGATAAGGCGCGACTAGTGGATGAGGGAAAATTACCAGTGTCCTTTTGGAAGAAACGTAAGACCGACAGTGAAGAGTCGAAGAAGTTTCGACTCGAAGAGGCAGTGGCTGCTTGCAAGGGTGGACGAATGTCTCAGGCTGCAGCGTCCGTTACCTATCATATCCCGAAAACTACCATATGGAGACGATTGCAACGCCAACAGCACCAACAGCAGCAAAACGACCAGGGCGATAAGAAGCTTGCCAATGTGCGATTACCGAATCAATTCGGCAAGATCCATAAGCGCAATGGACGACGAATCTCTTGGGGCGAACCTTTGGACCGACGGGAGGAAGAACAATTGTCATCGTTGGCAACGTTATCGTCGCAGAACGAATCCGACTTCACGTATTGCGAGATGGCATCGCAGGCGGTGACAGTCTCGGGAACAGATGCGATACCAATAACGTATATACACGAGGGCAGTATACCGGAAGAATCGGTAATAATCTTGACAACGAACGGCGTCGTGGAAGGACTCGACTTGGAGGAAGGAGAGCATATTATCGTGAACTCGGAATCATCTCGAGAATACATTCCGTGCGGTATAAGCATAGAGGAAACTACGGATTACCAGAGGACCGACAGCTAA
- Protein Sequence
- MADVNEDTDCVDGERSSSYCFKWHDYRNHLSAVIRQLFEEDCMVDVTLSAAGERIHAHRIVLCACSPLFQEVLGQVNEDHPTIILTDILLRDVKSIIEFAYHGEVRVPVDNIESLLDAARSLKIYGLTEVDDIPDLRFTPENLTKDEDRDLSVDRFESHSIAYEERPIVALEKACENQSSRMHCPSTQKCTGEPADSFLGSAIADNGVEKLMIGNNSRKRGRREATGKRDYSEDMLVSAINDLRAGQTLIEASTKHNIPRSTLYMRAKSLGIRLNASRNEYPAECMKAAIDAVIGGSSLQHASEMFGIPKTVLWRRIQKEGYQILRSDMKRTYGTENREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPVSFWKKRKTDSEESKKFRLEEAVAACKGGRMSQAAASVTYHIPKTTIWRRLQRQQHQQQQNDQGDKKLANVRLPNQFGKIHKRNGRRISWGEPLDRREEEQLSSLATLSSQNESDFTYCEMASQAVTVSGTDAIPITYIHEGSIPEESVIILTTNGVVEGLDLEEGEHIIVNSESSREYIPCGISIEETTDYQRTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00773932;
- 90% Identity
- iTF_00773932;
- 80% Identity
- iTF_00773932;