Hsal042649.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990120.1:854440-861581[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.24 27 6.8 7.2 1 23 15 37 15 38 0.96 2 19 4.6e-06 0.00051 21.7 0.3 2 23 44 65 44 65 0.97 3 19 3.9e-05 0.0044 18.7 4.9 1 23 71 93 71 93 0.98 4 19 0.0072 0.81 11.6 0.1 1 23 172 195 172 195 0.94 5 19 0.62 69 5.5 0.1 1 23 201 224 201 224 0.92 6 19 1.4 1.5e+02 4.4 0.6 1 13 233 245 233 251 0.83 7 19 1.4 1.5e+02 4.4 0.6 1 13 284 296 284 302 0.83 8 19 1.4 1.5e+02 4.4 0.6 1 13 335 347 335 353 0.83 9 19 1.4 1.5e+02 4.4 0.6 1 13 386 398 386 404 0.83 10 19 1.4 1.5e+02 4.4 0.6 1 13 437 449 437 455 0.83 11 19 1.4 1.5e+02 4.4 0.6 1 13 488 500 488 506 0.83 12 19 1.4 1.5e+02 4.4 0.6 1 13 539 551 539 557 0.83 13 19 1.4 1.5e+02 4.5 0.5 1 13 590 602 590 607 0.84 14 19 2 2.2e+02 3.9 1.4 1 13 692 704 692 712 0.78 15 19 0.044 5 9.1 0.2 1 15 736 750 736 752 0.91 16 19 1.4 1.5e+02 4.4 0.6 1 13 761 773 761 779 0.83 17 19 0.044 5 9.1 0.2 1 15 847 861 847 863 0.91 18 19 2 2.2e+02 3.9 1.4 1 13 872 884 872 892 0.78 19 19 1.4 1.5e+02 4.4 0.6 1 13 916 928 916 934 0.83
Sequence Information
- Coding Sequence
- ATGTTTGTCCACAGGACACAACACGAAGGTATGGTGTCGCATTTCACGTGCCATCTCTGTGGGAAAGTTTcaaatAATAGTAAAACACACCGAGGCCACATGCGGAACCACCACAGCGGGCAAAGGCCCGAATGCGAGCAGTGCGGCAAGACCTTCATCAACAAGGACTCGCTCGAGGAACACCGACAGATCCACCAAGGCATCAAAAACTACTCGTGTTCCGAGTGCGGCAAGCGGTTCCGCACCCGGACGCAGATCAAGCACCATCAGCTCAAGCACACCGACATTAAGGAGTATTACTGCGTCGAATGCGATGTCAGGATCTACAAACACATCAAGAACTACTCGTGCTCCATAACGAGCGGTTCCGGACGAGGACGCAGATCGAAGCACCACCATCCCAAGCGCACTGACATCAAGGAGTACTACTGCGTGGATTGCAATGTCAGgCTCGAACCTTTTCAATTCACCCTCGCGTATAAGTCGAACTTATTGAAAGTATATCGCGGCAGGTTCCCGTGCTCGCGCTGCGAGAAGCGGTTCGACAGCGCGCGCGCGCTGGACGCGCACGCGCTGGTGCAGCACGAGGGGCTGCGCGCGCACGCCTGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCAGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacacccccGCCCCGCCTGCCCCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacccccCCGCCCCGCCTGCCCCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacacccccGCCCCGCCTGCCCCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCGTGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacccccGCCCCGCCTGCCCCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCATGCGGCAAGGCCTTCCGGgtgagacacacacacacacacacacacacacccccGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCGCCTCGCTCGCCAAGCACCGCTCGCACGTGCACGGCGGCGCGCGCCCGCAGCCCCGCCACGTGTGCGACGCATGCGGCAAGGCCTTCCGGgtga
- Protein Sequence
- MFVHRTQHEGMVSHFTCHLCGKVSNNSKTHRGHMRNHHSGQRPECEQCGKTFINKDSLEEHRQIHQGIKNYSCSECGKRFRTRTQIKHHQLKHTDIKEYYCVECDVRIYKHIKNYSCSITSGSGRGRRSKHHHPKRTDIKEYYCVDCNVRLEPFQFTLAYKSNLLKVYRGRFPCSRCEKRFDSARALDAHALVQHEGLRAHACPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPAALASRASLAKHRSHVHGSARPQPRHVCDACGKAFRVRHTHTHTPPPRLPRRARLARLARQAPLARARRRAPAAPPRVRRVRQGLPGETHTHTHTHPRPACPAALASRASLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHTPAPPAPLAKHRSHVHGGARPQPRHVCDACGKAFRHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPARQAPLARARRRAPAAPPRVRRVRQGLPGETHTHTHPPAPPAPLAKHRSHVHGGARPQPRHVCDACGKAFRHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHTPAPPAPLAKHRSHVHGGARPQPRHVCDACGKAFRVRHTHTHTHPRPACPARQAPLARARRRAPAAPPRVRRMRQGLPGETHTHTHTHTPAPPAPPRSPRAPRSPSTARTCTAARARSPATCATHAARPSG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00773463;
- 90% Identity
- iTF_00773463;
- 80% Identity
- iTF_00773463;