Hsal043064.2
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990120.1:6916195-6937000[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 16 7.5 2.2 1 19 282 300 282 303 0.94 2 13 0.006 0.67 11.9 0.3 1 23 326 349 326 349 0.95 3 13 0.59 67 5.6 6.0 1 21 386 406 386 407 0.94 4 13 1.8 2e+02 4.1 1.8 1 23 442 467 442 467 0.95 5 13 0.049 5.5 9.0 3.9 1 23 837 859 837 859 0.94 6 13 0.0082 0.92 11.4 0.1 3 23 866 886 864 886 0.97 7 13 3.2 3.6e+02 3.3 1.7 2 23 983 1004 982 1004 0.92 8 13 2.9 3.3e+02 3.4 1.6 2 23 1021 1042 1020 1042 0.93 9 13 1.1e-07 1.3e-05 26.7 2.6 1 23 1048 1070 1048 1070 0.98 10 13 0.00011 0.012 17.4 0.7 1 23 1075 1097 1075 1097 0.98 11 13 0.061 6.8 8.7 4.0 2 23 1104 1126 1103 1126 0.95 12 13 5.2 5.8e+02 2.6 0.1 1 19 1133 1151 1133 1152 0.77 13 13 0.035 3.9 9.5 0.1 3 23 1165 1186 1164 1186 0.92
Sequence Information
- Coding Sequence
- ATgtctgaaaacagcaggaaacGGTGTAGAAAGTCCAAACTAGTGCCACGGGACTGTGCTGACTTCGTCGAAGAGGATTTGGTTTTGGAGCCCATCCCGGAGCCGCCACAAAAGAAACTGCTCctcgaaaaaattaaaaaagaaccaGATGACTATGTCCCACAGGAACCTTCTGCCCACCAGTTCTCCGTCAATGTGGAAGTCGAGGACATGGACGGTTCCATCCCTGACGAGGACCCTTCCAATTACATGAAGTACTTGTTCAGCTTGTCCAAAGAATCCCAGGACGAAGAACCAATCAAAGATGGAGAGCCAATGGAGTTTGTCGACAATAGTTTACTGAAGCTGAAAAAAGTTGCGCTAGAAGATGAGAAAAAATCCACAATTGATGTGAGGAAACTGCAAAGGATGCTAGGGGTTCTGCATAAGAAGTTCCCGGATGAGATTGAAGCTGTTATGCACACAAGGAACCAGTGGGGGCGGGTTTTTGTTGAGAAAAACGCTACGGATGTAAGACAATCTCAAGATGATCAGCTGCAAGAAGTTATTCGACATTGGAGCGCATGGACCGTTGGTACCAATTGTAGAATCAGAGAAAGCCCTTTCTGCTACAAATGTTACATCTGTGATATTGCTTGGTGGTCTCTCACGGAATTCAGCGCGCATTTGACAATGCATGATAAATGCAACTTGCAACTGGAGATTCAACAACAGGAATGCAATATAGTCGCGTACCATGGCAACACATACCAGTGCAAAGATGTACATGTTCATGGGAAGTGCTTGAAATGTGCGAAAACTTACGACCACCATTTATCGAATAGGATTAAAAACGATGCGTACTACTATTGCAATTATTGCCAGGACAGATTTCAGACATGCAGCTCTTTGGCAAAACACGAAGGCACTTGTAATAGAAACCCTATTAGAGTCCTATCTATCTCGCAGGATGGTAAAGAGCTTAAATTCTCAGATTTCTCTTGCCAAGTCTGCGGTACAGTGTTCTTGTCTAACCCGGATTTGACTGAGCACATGGTGATATGTCACAAGGTCCGTTCAGACGAACCTATATTCGTCAAATACAAAACTTGTCGGTTATGCAAGTTgaattattatgttttcaaCTTCCATATTTGCTTGAAGAAGAACTTTTTACATGAGTGCAAGTTTTGTCATAGCAAGTTTCAGAACAAATTTATGCTGCAGCATCATTTGCAGATGTGGGATAAGGTTATGCGGTGTAGGATCTGTGATAAGTACATCGAGCGGAGATGTATGGCTGGGGAGCACTATGCGTTACATAGTGACAATTTTGAGATAGTGCACCGATGTTTAGTTTGTAAGAAGATCAAGGTGTTTGTGAGTGAAGAGGCTATGAGGAATCACAGGTCGAAGTACCATAACAGGATTGACTCTCGACGGTCAGCGTCAGACAagatCATCATCGCAAAACTCATGCTGCGGCAATGTATGGTGGATATTAACGTGAGAAAgaAAGTTCGAGTTTACGCTCCAGTTAAACCAAGCAGTAATGACAGAATTGTAGAAAGAAGCGTAGAACCTGAAATGTCTAATACCACTATTGCCCATGACAATATAGTCAGTATGCGTACTGAACAAATAGTCCCCGAAATAAACGTAATCCATGTCAAAGAAGAGAAAAACGACTACGCAATTAGTTATGATGAACACAATAATATAGAACGAGGAAAAGATCAAAATAAAGACGATAACATAGTAGCTGAGAGTGCACACCAGGAAGATAGTGATATAGTGATTAAAGATGGTAACATAGCAGCTGAGAATAGTATATTAATTAAAGATAGTAACATAGTAGCTGAGAAGGCACAGCCAGAAGATAGTAATATAACTAATATAGTgattaaaactgaaaaaattgATGATAGTACAGTAAATGAAACGGAGAACCTAGAACAGGCTACAGTTGGCAAAGAACGTAGCAAAGACAGCTCTCAAATAATAGAGGAGTTAAACGAATTCCTCGATATCAAACCTGATATTGTGAGAGTTAAAGAAGAAAAGCTATCCGATGATGAATCTACCCAGAGAAACCTGTCTAGTTTGctaaaaatatctgaaaatgTTAATGTCACTGATACTGATATAAAAAAGATCTTCCAAGCTTCAAGCACATTCGCCGAAGAAATAACAAACAATCCTGACCATTCCAAAGTATTTCAGGTTTCCAAAAGTCTTTTGGAATCTGAAATTTCTGCGGTAaagaaggaaattaaaaaagaatcaGAAGACGATTTGGTTTTAAACTCAAGCACTGACTCTAAAAGAGCTGAAAGTGTTACTAGTGAGAGTTCAGATATAGGTTTGTTAAATTTAGAGCCAGAAGTGATCCTCAAAGCGGGTTACAGGAAGAGGAAGATCTATCGGTGCACAAAATGTGACTTTTCTGCATTTCACAAAGAATACAAAGAGCATTATAACACTTTTTGTAGAGCTTCTAAAACTGGAGAATTAACCATAGACATGGAATACAAGTGTACAAAATGCGACAAGAACTTTCCTAGCTTCAAAAAGTACTCGTTGCATTTCGAAAATCATGGCTATCAGTACCTGGCTTGCCCTCAGTGTAGAGCAGAGTTTGACActgtttcaaaattattatctcatttgaacaCTCACGTAAAGAATCAGTTTGTGAGATTACAACTTTTGAATAGTAAAGATGATGGGAAGTGTAGAGGGTTTCAGTGTAAGACTTGTAAACAGTTTGAGACTACGAATAACTCTTTTGAGCATTGGGAGAAGCATCTGGAGTTGACGAATGAGGCTTATAAGGAGCCGGCGCCGGAGCCTTTCAATGATGGCCCAAATGGCGAGCACGCGTTGAAAGCTGACGTGTTGAAAGAAGTTTtagCCTCATTACTCACCGAAGAAAAATCCCACACTCCCGACGCGAAACGCGTGAAGGTGTGCGTCGTGTGCGCGCGCCGTTTCGAGCGTCGCAACGACTGCAAGAGACACCTCGTCGAACATCTTCTAGAAGACTCCTACGCCAAAATCGCGGACAACGACCACACGCTAAAATGCCAGATATGCTATGAGCCTCACCAGAAAGCGGAGCTGTACAAGAAGCATATGCGGGATCATGCTTCCCTGCCTATATACCAGTGCAGCATTTGTGACAAGACGTTCAGTGACTCGAGCAACTTCACGAAGCACAAGAAGATACATAATCTGAAGGCGTTCGTGTGTGATATTTGTAATAAGAAGTTCCAAGCGAAGTTTTCGCTGGAGAAGCATATAGAAATGCACATGCAGACGGATCCGATAACCTGCAACCGCTGCGACAAGGTGTTCTACTGCCAGTCGTTCTACAAACGGCACGTCCGACAGCTTCACGACAAAATCCCCAATCGCTTCAAATGCCCGCTATGCCGCGAGAGATACCCCGCCCTGAAAGATAAATGGGACCACATGTGGCTGGTCCACAAGTTGCGCAAGGAGACCGCGGACTGCCCCGTCTGCGGGAGCTCCTACCGCAAGTTCTCCGACGTGAAGAAACACGCCATGGCCGAACACGGCATGAATATCACGCTGGCCAATGTGTGGACACTCCTGAACCAGCTCGGTAAGGGGGGTGGAGGGGGGCAGAAGGGGGTAGGGGGGGACGTCGGTGCTGTAAAAGTAGAGCCGAAGGAAGACAGCGATGATGATTGCTTGCTCATTGAGGAGGAGAGGGAGACTTTGGTCGTGTACGATTGA
- Protein Sequence
- MSENSRKRCRKSKLVPRDCADFVEEDLVLEPIPEPPQKKLLLEKIKKEPDDYVPQEPSAHQFSVNVEVEDMDGSIPDEDPSNYMKYLFSLSKESQDEEPIKDGEPMEFVDNSLLKLKKVALEDEKKSTIDVRKLQRMLGVLHKKFPDEIEAVMHTRNQWGRVFVEKNATDVRQSQDDQLQEVIRHWSAWTVGTNCRIRESPFCYKCYICDIAWWSLTEFSAHLTMHDKCNLQLEIQQQECNIVAYHGNTYQCKDVHVHGKCLKCAKTYDHHLSNRIKNDAYYYCNYCQDRFQTCSSLAKHEGTCNRNPIRVLSISQDGKELKFSDFSCQVCGTVFLSNPDLTEHMVICHKVRSDEPIFVKYKTCRLCKLNYYVFNFHICLKKNFLHECKFCHSKFQNKFMLQHHLQMWDKVMRCRICDKYIERRCMAGEHYALHSDNFEIVHRCLVCKKIKVFVSEEAMRNHRSKYHNRIDSRRSASDKIIIAKLMLRQCMVDINVRKKVRVYAPVKPSSNDRIVERSVEPEMSNTTIAHDNIVSMRTEQIVPEINVIHVKEEKNDYAISYDEHNNIERGKDQNKDDNIVAESAHQEDSDIVIKDGNIAAENSILIKDSNIVAEKAQPEDSNITNIVIKTEKIDDSTVNETENLEQATVGKERSKDSSQIIEELNEFLDIKPDIVRVKEEKLSDDESTQRNLSSLLKISENVNVTDTDIKKIFQASSTFAEEITNNPDHSKVFQVSKSLLESEISAVKKEIKKESEDDLVLNSSTDSKRAESVTSESSDIGLLNLEPEVILKAGYRKRKIYRCTKCDFSAFHKEYKEHYNTFCRASKTGELTIDMEYKCTKCDKNFPSFKKYSLHFENHGYQYLACPQCRAEFDTVSKLLSHLNTHVKNQFVRLQLLNSKDDGKCRGFQCKTCKQFETTNNSFEHWEKHLELTNEAYKEPAPEPFNDGPNGEHALKADVLKEVLASLLTEEKSHTPDAKRVKVCVVCARRFERRNDCKRHLVEHLLEDSYAKIADNDHTLKCQICYEPHQKAELYKKHMRDHASLPIYQCSICDKTFSDSSNFTKHKKIHNLKAFVCDICNKKFQAKFSLEKHIEMHMQTDPITCNRCDKVFYCQSFYKRHVRQLHDKIPNRFKCPLCRERYPALKDKWDHMWLVHKLRKETADCPVCGSSYRKFSDVKKHAMAEHGMNITLANVWTLLNQLGKGGGGGQKGVGGDVGAVKVEPKEDSDDDCLLIEEERETLVVYD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -