Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990120.1:1308025-1330485[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0043 0.48 12.3 1.0 1 23 247 269 247 269 0.98

2 14 2.9 3.2e+02 3.4 2.0 1 19 276 294 276 296 0.86

3 14 0.029 3.3 9.7 6.5 1 23 330 353 330 353 0.97

4 14 0.11 13 7.8 0.1 1 23 357 380 357 380 0.91

5 14 0.068 7.6 8.6 0.3 2 22 830 850 829 854 0.91

6 14 0.0089 1 11.3 0.9 3 20 864 881 864 883 0.95

7 14 0.0012 0.14 14.1 0.2 2 23 899 921 898 921 0.95

8 14 0.04 4.5 9.3 0.3 1 16 934 949 934 951 0.88

9 14 1.3 1.5e+02 4.5 2.4 3 11 957 965 955 978 0.64

10 14 0.04 4.5 9.3 0.3 1 16 982 997 982 999 0.88

11 14 0.04 4.5 9.3 0.3 1 16 1003 1018 1003 1020 0.88

12 14 4.7e-06 0.00052 21.6 0.2 1 23 1024 1046 1024 1046 0.96

13 14 0.018 2.1 10.3 2.3 3 20 1063 1080 1062 1081 0.93

14 14 2.2e-06 0.00024 22.7 2.5 1 23 1174 1197 1174 1197 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0043	0.48	12.3	1.0	1	23	247	269	247	269	0.98
2	14	2.9	3.2e+02	3.4	2.0	1	19	276	294	276	296	0.86
3	14	0.029	3.3	9.7	6.5	1	23	330	353	330	353	0.97
4	14	0.11	13	7.8	0.1	1	23	357	380	357	380	0.91
5	14	0.068	7.6	8.6	0.3	2	22	830	850	829	854	0.91
6	14	0.0089	1	11.3	0.9	3	20	864	881	864	883	0.95
7	14	0.0012	0.14	14.1	0.2	2	23	899	921	898	921	0.95
8	14	0.04	4.5	9.3	0.3	1	16	934	949	934	951	0.88
9	14	1.3	1.5e+02	4.5	2.4	3	11	957	965	955	978	0.64
10	14	0.04	4.5	9.3	0.3	1	16	982	997	982	999	0.88
11	14	0.04	4.5	9.3	0.3	1	16	1003	1018	1003	1020	0.88
12	14	4.7e-06	0.00052	21.6	0.2	1	23	1024	1046	1024	1046	0.96
13	14	0.018	2.1	10.3	2.3	3	20	1063	1080	1062	1081	0.93
14	14	2.2e-06	0.00024	22.7	2.5	1	23	1174	1197	1174	1197	0.94

Sequence Information

Coding Sequence: ATGTGCCTGCCTCATCAGGAAGTCATACAAATTCAAAAAGAAATGCATAGAATCCTACAAATCCATTATGGAACATTTGAACACTGGCAAAAAGTGCCAAAAGACCCTTCAGCGGAGATACCAAGGGAACCTAAACCTGTGTATACATCGGAATCTGAACTAGACCTGGATGAACTATTCATAGACTCCGAAGTAGAAACTCCAGAAACCTCAATGCTGTCTCCGGAGCCAGAACAGCTTGCGAATATTGAACTGGAAAAAGCCGACACACCGGTGCATCTCCTCGAGACACCCGTGCACATTTTGGAGACACCGGTGTTGTGCGAATCTGACCAGCAGAAGGATAATGAAATATTGGATGATGTGGAAGTCAAAATGGAAGATGAAGTGGAAGACATTTTACACGTAGCTGATCAGAAGTTGGAAGTGAAACTAGAAATAGACCCGGATCCCGACCCTGATAATCTGACGCTGCAAGAAATCAAGTCGGAGCTGCTGGGTGCGACAGAGACGGCAGATGAGAGCGGGAAAGGGGAGAAGAGGAAGAGGACTGTGAAAAAGAAAGaaaaaacgTCCAAGATGTCACAGAAGTCCCAGCGCCTCCAAGTGCAGGCGAGACGACACAAGTCTAACCAAGACCTGGAGGTACACTTCGCCATCACGCAGTTCCTCACTGAGGATGACCAGGTGCAAGAGTTCCTGAAGAGGAGAGAGGGTGAGGGTTACCTGGAGGGCAAGTTCAAGTGTGAGCTGTGCCTCAAAAGCTTTAAGGAACAGAAATGGATGGACGCGCACGTCAAGAAACACGAGACTGCTGCCGGCTCATACGTCTGCAGCATTTGCAAGATCCGGTGTCGAACCCCCAAGTTACACCGCACCCATCGCGACTGCAACCACACGACCCGCTACGCGTGTCGGCTGTGCTCCTTCATCACTTACAGCAAGGCGCAGGCGCTGAAGCACCACGGCTGGCACGAGGGCGTGGAACACACCTGTCAACATTGTGGCGCCACCTTCCGGAAGCATACGACATACATGGGGCATCTGCGGCGCGCGCACCCCTCTGCGCACATCTgcggcgcctgcgcgcgcagcttCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCACGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCATCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACAGCCTCAACCTGCACGTCAAGGCCGTGCACAAGCTTGACGACACCCTCGAACACCTGGACAATGACGCCCATGACAGCTTCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGGTACAGCTGGACGACACCCTCGAACACCTGAACAACGACGCCCATGACAGATTCGTCAGCGCGTACGGCCGCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACGGCCTCAACCTGCACGTCAAGGCCGTGCACAAGGTACAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACGGACGCAACCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATGACAGCTTCGTCAGCGCGTACGGCCCCAACCTGCACGTCAAGGCCGTGCACAGGCTGGACGACACCCTCGAACACCTGGACAACGACGCCCATAACAGCGTCGTCAGCGCGAACGGCCGCAATCTGCACGTCAAGGCCGTGCACAAGCTGGACGACACCCTCGAACACCTGGACAACGATGCCCATGACAGCGTCGTCAGCGCGTACGGCCGCAATCTGCACGTCAAAGCCGTGCACAAGGACATCAACAAATTGGAAAACGACAGCACCCGATGTGAGGAGTGCGACGTGACGTTCGTGTCCCGTCGGGTATACGTCCGGCACGTGCTCACCACCGATCGACACAAAGACATCTCCATGGATATCTTAGGGTGTCGGAAGTGCGGGGAGCAGTTCGACACGAAGGAAGAACTGGAGAAACACACCCACTATAAGGAGAGGAAGTATGTCAGGAAAGACGCTCCAAGACGCTCCATCAAATGCGACGAGTGCGGGGAGGTATTCTCCCACCCCAACGGCGTGTACCAGCACTACCTGCGCGAGCACCCCGACACGCCGTACCGCTTCGCCGTGCGCCGCCACTACCTGTGCGAGCAGTGCGGCAAGACCTTCAAGGTGAGTGCGTCTCTCTCGTACACTGCACACTACCTGTGCGAGCAGTGCGGCAAGACCTTCAAGTGCGGCAAGACCTTCAAGGTGAGTGCGTCTCTCTCATACACTGCACACTACCTGTGCGAGCAGTGCGGCAAGACCTTCAAGGTGAGTGCGTCTCTCTCATACACTGCACACTACCTGTGCGAGCAGTGCGGCAAGACCTTCAAGGTGAGTGCGTCTCTCTCATACACTGCACACTACCTGTGCGAGCAGTGCGGCAAGACCTTCAAGTCCCCGGGGCTGCTGCAACAACACGCGCTGACCCACCTAGGGCTGCGGCCGCCGCCCGCCAAGAAGCCCGCGGGCCGGAACTGCTGCCGGCTCTGCGGGAAGACCTACAGCAAGCTCAGCGGGCTCTTCCGGCACAAACTGCCTGGTACCTCCAACCAACGTTTGTTACTCCTACCGCCTGTGCAACCGGAACCAAAACTGCTGGGGACTGTGCCAGAAGACCTGCATCGTCAGCGGGATCTTCCGGCACAAACTGGTACCATTTTTACTAGCTCTGACAGCCTGGTACCTCCAACCAACGTTTGTTATTCCTACCGCATGTGCAACCGGAACCGGAACTGCTGGCGGCTCTGCCGGAAGACCTGCATCCTCAGAAAAATCTTCCGGCACAAACTGACACACCTGGGCGTGCGGCGGCACAAGTGCCACATCTGCGACAAAGCATTCACCGACACCTCAAACCTCAAGCAGCATGTGCAAGGCGTACATCTCAACATCCGACGAGTGCGGAAGCGATAA
Protein Sequence: MCLPHQEVIQIQKEMHRILQIHYGTFEHWQKVPKDPSAEIPREPKPVYTSESELDLDELFIDSEVETPETSMLSPEPEQLANIELEKADTPVHLLETPVHILETPVLCESDQQKDNEILDDVEVKMEDEVEDILHVADQKLEVKLEIDPDPDPDNLTLQEIKSELLGATETADESGKGEKRKRTVKKKEKTSKMSQKSQRLQVQARRHKSNQDLEVHFAITQFLTEDDQVQEFLKRREGEGYLEGKFKCELCLKSFKEQKWMDAHVKKHETAAGSYVCSICKIRCRTPKLHRTHRDCNHTTRYACRLCSFITYSKAQALKHHGWHEGVEHTCQHCGATFRKHTTYMGHLRRAHPSAHICGACARSFVSAYGLNLHVKAVHKLDDTLEHLDNDAHDSFVSAYGLNLHVKAVHKLDDTLEHLDNDAHDSFVSTYGLNLHVKAVHKLDDTLEHLDNDAHDSFVSAYGLNLHVKAVHKLDDTLEHLDNDAHDSFVSAYGLNLHVKAVHKLDDTLEHLDNDAHDSFVSAYGLNLHVKAVHKLDDTLEHLDNDAHDSIVSAYGLNLHVKAVHKLDDTLEHLDNDAHDSFVSAYSLNLHVKAVHKLDDTLEHLDNDAHDSFVSAYGLNLHVKAVHKVQLDDTLEHLNNDAHDRFVSAYGRNLHVKAVHKLDDTLEHLDNDAHDSFVSAYGLNLHVKAVHKVQLDDTLEHLDNDAHDSFVSAYGRNLHVKAVHKLDDTLEHLDNDAHDSFVSAYGPNLHVKAVHRLDDTLEHLDNDAHNSVVSANGRNLHVKAVHKLDDTLEHLDNDAHDSVVSAYGRNLHVKAVHKDINKLENDSTRCEECDVTFVSRRVYVRHVLTTDRHKDISMDILGCRKCGEQFDTKEELEKHTHYKERKYVRKDAPRRSIKCDECGEVFSHPNGVYQHYLREHPDTPYRFAVRRHYLCEQCGKTFKVSASLSYTAHYLCEQCGKTFKCGKTFKVSASLSYTAHYLCEQCGKTFKVSASLSYTAHYLCEQCGKTFKVSASLSYTAHYLCEQCGKTFKSPGLLQQHALTHLGLRPPPAKKPAGRNCCRLCGKTYSKLSGLFRHKLPGTSNQRLLLLPPVQPEPKLLGTVPEDLHRQRDLPAQTGTIFTSSDSLVPPTNVCYSYRMCNRNRNCWRLCRKTCILRKIFRHKLTHLGVRRHKCHICDKAFTDTSNLKQHVQGVHLNIRRVRKR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -