Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990097.1:49168632-49171303[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00089 0.1 14.5 1.4 1 21 3 23 3 24 0.96

2 14 0.00021 0.023 16.5 0.0 1 23 26 49 26 49 0.97

3 14 0.04 4.5 9.3 2.1 1 23 53 76 53 76 0.97

4 14 6.5 7.2e+02 2.3 1.5 2 23 151 173 150 173 0.93

5 14 0.0021 0.23 13.3 0.3 2 23 243 264 242 264 0.96

6 14 0.022 2.5 10.1 0.5 1 21 268 288 268 289 0.94

7 14 0.29 32 6.6 0.1 1 23 330 353 330 353 0.93

8 14 0.16 18 7.4 0.2 2 23 379 401 378 401 0.95

9 14 0.017 2 10.4 1.6 2 23 425 446 424 446 0.94

10 14 4.1e-05 0.0046 18.7 0.0 1 23 450 473 450 473 0.97

11 14 0.0062 0.7 11.8 0.5 1 23 477 500 477 500 0.98

12 14 1.3 1.4e+02 4.6 1.8 1 23 505 530 505 530 0.90

13 14 0.067 7.6 8.6 5.8 1 22 539 560 539 562 0.88

14 14 0.0028 0.32 12.9 0.2 1 23 572 595 572 595 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00089	0.1	14.5	1.4	1	21	3	23	3	24	0.96
2	14	0.00021	0.023	16.5	0.0	1	23	26	49	26	49	0.97
3	14	0.04	4.5	9.3	2.1	1	23	53	76	53	76	0.97
4	14	6.5	7.2e+02	2.3	1.5	2	23	151	173	150	173	0.93
5	14	0.0021	0.23	13.3	0.3	2	23	243	264	242	264	0.96
6	14	0.022	2.5	10.1	0.5	1	21	268	288	268	289	0.94
7	14	0.29	32	6.6	0.1	1	23	330	353	330	353	0.93
8	14	0.16	18	7.4	0.2	2	23	379	401	378	401	0.95
9	14	0.017	2	10.4	1.6	2	23	425	446	424	446	0.94
10	14	4.1e-05	0.0046	18.7	0.0	1	23	450	473	450	473	0.97
11	14	0.0062	0.7	11.8	0.5	1	23	477	500	477	500	0.98
12	14	1.3	1.4e+02	4.6	1.8	1	23	505	530	505	530	0.90
13	14	0.067	7.6	8.6	5.8	1	22	539	560	539	562	0.88
14	14	0.0028	0.32	12.9	0.2	1	23	572	595	572	595	0.96

Sequence Information

Coding Sequence: ATGAACTTTAGTTGTGATAAGTGCGGCACTACTTTTATATCGGATCACGCCTTACGCGACCATCATCGCCAGAATTATGTTTGTGATACTTGCGGAGAGGGCTTTATCACCGAATCTGCGATGATAGCTCACACCAAAATACCGCACGAGAATAAGTATAACTGCAGTCGTTGCGTGGCCACGTTCTCTTCTCTCGACGAGAGGAACCATCACGTTAAAACTCAACACACGAATACACCTTACATGTGCAACTACTGCAAAGATAAACCTCGTTTCTCGAATTGGGAATTACggcCCAGTAAGGAAATAGCGGGACATACTGAGACAGAACGTAAAACGAAAAAGAGACTGTTTGAAAGATCTGTTAACCAGAACCCGCAACGACAAAACGCTGTACTGATACTTAAGTACTCTACAGCCTTCCCCTTTAAGACTCGATTTAATAGAATTGTCTGTTCGTACTGCCATGACGAGTTTGAACCGATGACGGCGTTGAGGTGTCACATCAAAACCGACCATATTAGTGCTGATTACAACAGCGCCTTTTACAAGGTGGTAGACGACTTAAAAATCGACATAACCGAATTCAAATGTAACCTATGTTCCCAAGAAATGCTGAGCATTGAAGTGTTCATGAACCACTTGTCTCGTGATCACGGGAAAACCGTCAACTTCGACGTGCCATTCGGGGTGTTGCCTTATAAACAGGGGCCGTCTGGCCTGTGGATGTGTCTAGACTGTGACAAAACATATTCAGAATTTTCACAAATCAACGGCCATTTGCGCAGTCACGTAAAGATATTCACTTGCGATAAATGTGGAGCGACTTTCCTCTCTGAGCACGGCTTGCGGCAACACGAGCGCAACTTCAAATGTTACAAAGCCACGTATAAACCCCGATTCGGGAAGGCGCTAAAGCATCGTAGCAACACTGAAATTATATTGCAGTGTTCAACAGCGCGTCCCTTCAGGACTTGGGGCCAGAACTTCAACTGCGTATATTGCCGCGTGCAGTCCAACGATCCGAACGGTCTAAGAATGCACATGGCAGCAAGACACGCTAATACCAATATCCAGCATGTTTTCAGTCGAAAACTAAGGAAGGAGTTTCTTAAAGTTGATATAACTGATCTGCAATGCAAGCTCTGTTATTTACGAATAGACTCTTTGGATGATCTTATCACGCACCTTAAAAATGATCACAAGCAGCCGATCAACGCCGACGTGCAACCAGGCGTGTTGCCCTTCAAACTAAACGATGGATCCCTCTGGAAGTGCGCCATATGCACCTGTCAATTCTCAGATTTCATCTCTTTAAAGAAACACACCGCTGAGCACTACCAAAACTTCGTCTGTGATACCTGCGGGGAAGGTTTTATCACAGAATCAGCGCTGATAGCCCACACGAAGATCCCACATGACAATAAATACAGCTGCAGCCGATGCGTGGCGACATTCTCAACTTTAGAAGAAAGGAACATTCACATCAAAACTCAACATACAACGCTCCCGTACATGTGTTCACATTGTAAGGAGAAACCCCGCTTTGCAACGTGGGAATTGCGCAAGCGCCATCTCATGGAATTCCATAACTACAAGCCGGGCGCTGAAATGTACGAGTGTACTACCTGTCATATGACTTTCAAGACAAGGTCTCAAAAGTACCACCACAATGTAAAAGCACATAGGACTAAGAAAGAAACGGAATATGGCTATCCGTGCGGCAGTTGTTCTAGAGCCTTCGCTACTAAGTTGTCTTTGGATAAACATATCGCTAAGAAACATTTTCACGTCTGA
Protein Sequence: MNFSCDKCGTTFISDHALRDHHRQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSSLDERNHHVKTQHTNTPYMCNYCKDKPRFSNWELRPSKEIAGHTETERKTKKRLFERSVNQNPQRQNAVLILKYSTAFPFKTRFNRIVCSYCHDEFEPMTALRCHIKTDHISADYNSAFYKVVDDLKIDITEFKCNLCSQEMLSIEVFMNHLSRDHGKTVNFDVPFGVLPYKQGPSGLWMCLDCDKTYSEFSQINGHLRSHVKIFTCDKCGATFLSEHGLRQHERNFKCYKATYKPRFGKALKHRSNTEIILQCSTARPFRTWGQNFNCVYCRVQSNDPNGLRMHMAARHANTNIQHVFSRKLRKEFLKVDITDLQCKLCYLRIDSLDDLITHLKNDHKQPINADVQPGVLPFKLNDGSLWKCAICTCQFSDFISLKKHTAEHYQNFVCDTCGEGFITESALIAHTKIPHDNKYSCSRCVATFSTLEERNIHIKTQHTTLPYMCSHCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYGYPCGSCSRAFATKLSLDKHIAKKHFHV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01360094;
90% Identity: iTF_00023173;
80% Identity: -