Hsal013616.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990098.1:36810325-36818702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.071 8 8.5 0.6 5 23 128 146 126 147 0.91 2 15 1.5 1.7e+02 4.3 0.1 2 23 151 173 150 173 0.89 3 15 0.17 19 7.3 5.9 2 23 179 201 178 201 0.96 4 15 0.0013 0.14 14.0 1.2 2 20 210 228 209 228 0.95 5 15 0.00064 0.072 14.9 0.4 1 23 237 259 237 259 0.94 6 15 0.02 2.2 10.2 0.2 1 23 265 288 265 288 0.95 7 15 0.13 15 7.6 1.1 2 19 294 311 293 313 0.93 8 15 0.92 1e+02 5.0 0.2 3 12 320 329 319 338 0.75 9 15 0.0001 0.011 17.4 1.5 1 23 344 366 344 366 0.97 10 15 0.0011 0.13 14.1 0.3 2 23 373 394 372 394 0.98 11 15 0.23 25 6.9 0.1 5 23 459 477 458 477 0.94 12 15 0.23 25 6.9 0.1 5 23 542 560 541 560 0.94 13 15 0.23 25 6.9 0.1 5 23 625 643 624 643 0.94 14 15 0.23 25 6.9 0.1 5 23 708 726 707 726 0.94 15 15 0.23 25 6.9 0.1 5 23 815 833 814 833 0.94
Sequence Information
- Coding Sequence
- ATGAATTTATGTAGAGCATGTTTATGTTCGGATAAAGAGTTGTTTCCGAcagatgataattttattagCAATTATAACTTGCTTACTAATATAGACATAACATTTTCTGATGGAAAGCCACAAAATGTTTGCCGAACTTGTATGCAGGCTGTTAACTTTTTCATTGAGTTCCGGAATAAGTGTGTTTCTGCTGAAACCACTCTGTTGGGAATTTTAAAACAGGTCAAGTCTGAGGCTATAATAGAAATTGAACCTTTAAATGTGAAAGTGGAAGTCAAGTATGAAGCTGAAGATTGTGGTTCTGAGGTTGACTTAGGGGACAATCAAAATGATTACACAGAGGATAATagcagtattattaaaaaagaagaaagTCATGgtcTCTGTGCTAAAGAGTTTGAGGACAAAGCCTCATTGAATAAGCACCTGGAGGGTCACCACGAAAATACGAGGTGTGAGCTGTGTTCCGGCATCAAGTTCGAGTCCTGGCCGCAGCTGCTGGCGCACCGGATCCTGCACACGGTGCACCACCAGAGGTGCCATCTTTGCAACGTCAAGTTTAGATCACACACCAATTTGGAGTTCCATTATAGGAAAGTGCACTCCGAAGAGAAGAATGTGGTGCTGTCTTGTCATATATGTCAGAGAAAGTTCAGTACTCCGAAAAGATTATCAAAACACATATGGGGATCGCAcaataaaaatgtgtacattTGTGATATTTGTTCTAAATCgtaCAACAATAAACAAAGATTGAAGCTCCACATTGTGGGACATGGTAACGCGAAACCGTACGCTTGCGATTTGTGCGGATACCGCAGTAAATACGCTACGGGACTTTCGGCTCACACGATAAGGAGGCACACGCCTGAGAAGTGCATCTGCAGGAACTGCGGGCAGGCGTTCGCGGACGCCGAGCGACTCGCCAAGCACTCGTGCCCCGACCGGAGCCGGATCTGCCCCGTCTGCGGGAAGAGCCTGCGCCGAGGGttcgtCCGGCACGTAGCGTCGCACACTGAGGAGCGGCCGTACAAGTGTGATCGGTGCCCGACGTCGTACAAGTCGCGGTCGGCGCTGAAGGTCCACAAGGATCGGCACGACGGGAACCCCACGCAGCAGTGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCATCAAGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGACCACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGAACACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGTGAGACCCGCTCGCAGCGCACAGGAACACGAGGCGACCACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGAACACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGACCACGCAGCAGTGCGAGTACTGCCTCGTGCGGTTCTACTCGCGCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGAACACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGACCACGCAGCAGTGCGAGTACTGCCTCGTGCGGTTCTACTCGCGCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGAACACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGACCACGCAGCAGTGCGAGTACTGCCTCGTGCGGTTCTACTCGCGCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGAACACGAGGCGACCACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGAACACGCAGCAGGGCGAGTACTGCCTCGTGCGGTTCTACTCGCCCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGTGAGACCCGCTCTCAGCGCACAGGAACACGAGGCGACCACGCAGCAGTGCGAGTACTGCCTCGTGCGGTTCTACTCGCGCTCCGTGCTCGTCAAGCACCGCCGCGTACACACCGGTGA
- Protein Sequence
- MNLCRACLCSDKELFPTDDNFISNYNLLTNIDITFSDGKPQNVCRTCMQAVNFFIEFRNKCVSAETTLLGILKQVKSEAIIEIEPLNVKVEVKYEAEDCGSEVDLGDNQNDYTEDNSSIIKKEESHGLCAKEFEDKASLNKHLEGHHENTRCELCSGIKFESWPQLLAHRILHTVHHQRCHLCNVKFRSHTNLEFHYRKVHSEEKNVVLSCHICQRKFSTPKRLSKHIWGSHNKNVYICDICSKSYNNKQRLKLHIVGHGNAKPYACDLCGYRSKYATGLSAHTIRRHTPEKCICRNCGQAFADAERLAKHSCPDRSRICPVCGKSLRRGFVRHVASHTEERPYKCDRCPTSYKSRSALKVHKDRHDGNPTQQCEYCLVRFYSPSVLIKHRRVHTGETRSQRTGTRGDHAAGRVLPRAVLLALRARQAPPRTHRTAAYTPVRPALSAQEHEANTQQGEYCLVRFYSPSVLVKHRRVHTGETRSQRTGTRGDHAAGRVLPRAVLLALRARQAPPRTHRTAAYTPVRPALSAQEHEANTQQGEYCLVRFYSPSVLVKHRRVHTGETRSQRTGTRGDHAAVRVLPRAVLLALRARQAPPRTHRTAAYTPVRPALSAQEHEANTQQGEYCLVRFYSPSVLVKHRRVHTGETRSQRTGTRGDHAAVRVLPRAVLLALRARQAPPRTHRTAAYTPVRPALSAQEHEANTQQGEYCLVRFYSPSVLVKHRRVHTGETRSQRTGTRGDHAAVRVLPRAVLLALRARQAPPRTHRNTRRPRSRASTASCGSTRPPCSSSTAAYTPVRPALSAQEHEANTQQGEYCLVRFYSPSVLVKHRRVHTGETRSQRTGTRGDHAAVRVLPRAVLLALRARQAPPRTHR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -