Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990099.1:6833532-6845914[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.041 4.6 9.2 2.3 1 23 367 389 367 389 0.96

2 8 7.2e-06 0.00081 21.1 2.6 1 23 435 458 435 458 0.96

3 8 0.29 32 6.6 0.0 2 23 464 485 464 485 0.93

4 8 1.9e-05 0.0021 19.7 1.2 1 23 491 513 491 513 0.97

5 8 0.0035 0.39 12.6 2.6 3 21 520 538 519 540 0.96

6 8 1.5e-06 0.00017 23.2 1.5 1 23 549 571 549 571 0.99

7 8 1.5e-06 0.00017 23.2 1.1 1 23 577 600 577 600 0.97

8 8 0.012 1.3 10.9 1.1 1 23 606 629 606 629 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.041	4.6	9.2	2.3	1	23	367	389	367	389	0.96
2	8	7.2e-06	0.00081	21.1	2.6	1	23	435	458	435	458	0.96
3	8	0.29	32	6.6	0.0	2	23	464	485	464	485	0.93
4	8	1.9e-05	0.0021	19.7	1.2	1	23	491	513	491	513	0.97
5	8	0.0035	0.39	12.6	2.6	3	21	520	538	519	540	0.96
6	8	1.5e-06	0.00017	23.2	1.5	1	23	549	571	549	571	0.99
7	8	1.5e-06	0.00017	23.2	1.1	1	23	577	600	577	600	0.97
8	8	0.012	1.3	10.9	1.1	1	23	606	629	606	629	0.95

Sequence Information

Coding Sequence: atgttacacAACAGCGGGCCTTACGGGCCGAACGACGTGCCTATTAATATGGGAGCGCCCGTAAATATGACCCAAATGTCGAGCCCAATGAATTTAGGGAATAATTTGAGTAACTTGGTCAAAATACCGCAACAGACGCCTCAACCCTCAGTTCCGCACTACAACATGCCAGATTATTCAACATTTGGCCATCCTCCGTTGAATATGGGGCATTCTATGAGCCCGTTTGGAAATTATCACCATCTAAACTTCCAGGCTAACTATGGTCATTCGAATCCTAATGTAACGCATGATACGACCTCAAACAACGTCCAAAACAGTATGCTACCTATGAATCTGAATATACAAAGCGATCACGGGCCCAGTTTGATGAATTACCACAATTTTGAAACCAAAAGATTTGATGTAAACAATGCACCTTACAGAGAAAACGTAAGTCGAAAAATGCCTATAAATATACCTCAAATACACACTAAAGCCTTCCATAAGCACGCAGGAGTGGAGGCAAATTATGGTCAGTACAATTCTATTCAAGAAAATCCACTCTATACTCAAGATTTATCAAAAACACCAGAAAGAACTTATATAGACAACAACAGAAGAAAAAGTTTAGAAAATACGGTGAAGCTTATCGAAAATATTCTTATTAACAGTACACCGAAAGATAAGTTAAGAGATTTTAGTAGTACAGAGTTGTTAGACAATATGCAGTCAAATGATACGAGCGTTGACTTGAGACACACAAAGTTACAGAATACTGAAGATAGCAATAAAATTGTGCAGCATGGAAGTCTAAATTTAACTCCCGCATCTAAGACAAATAACATGCAGACTAATAATGCTGATTTACAGAGCTTGAGCACTGAAATCAAAAATAAAGAACCAATACTTCAAGTTAATATCAAAGAAGAAGTTGTAGATGATATGGTAAAAGTAAAAGTAGAACCGTTGCATGCTGATGGAGATAATGTACCGTTTCTCAGGGACATTAATGCAGTACCCAAAGACATGGTTGAATCGGATGCGGTTATTATTGAGGAGAATAATGTGGCCGAGGCACGGGAAGCTATGAAGACTGGCTCCAACCCAAATACTTACTATGAATGTTCTCACTGCAATATTCTCTTCAAGAACCCGAAGAGGTTTCTCATCCACTCGAAATGGCATTCCTTCGGTTTGACCAATGAGAAGCGACAAGAGCTCGTGAGGGAGAAAGAGACGAAGAAGAATATGAAGAGAGAGGCCAAGATTATGGAAAGaTTGAACTCAAAAGAAGTAAAAGATGGCGCAGAGGGCGAAACACATCCATGCAAGGATTGTGACAAAGTGTTTGCTTTGAAGAGCAGTCTGAAAAACCACCGGCAGAGATACCACCCGACCCGCGTCCGGGAGTGCAAGATCTGCCACGTGTCGGTGGTGGGCTGGCTGGCGCTGCGCGCGCACACGGCGGCGCACGCGGCGGGCGCCGGCTACGCATGCGCAGACTGCCCCAAGCGGTTCAAGTACGCGCACTCGCTCGCCAAGCATCGCGACACGCATCTGGAGAAAACCCACGGTTGCCAACAATGTGACAAGAAATTTGGGTCGCAAGCGTTGCTCAAGATGCACATGAAATGCCACGAGCGGACCGCCAGGGGAGCCACGTTCCGATGCACTTATTGTGGAAAGGGATTCTTTGAAAGCTACAATCTACAGGTACACGAGCGGACGCATCGCAACGAACGGCCGTTTCAATGCGACATCTGCAAAACAAGCTTCGGCACCAACTCTAGTCTCAAAAGGCATGTCAAAGTTTCCCACAGCACAGCGAAGCCCTTCCCCTGCCCGACGTGCCACCGCATGTTCGCGTCCGTCACCACGCGCGCGCGCCACACGTCGCGCGCGCACAACGACCGCGCGAAGGACCCGCCCCGCAAGCCCGCCAAGCCGCCCGCGGGACAGTGA
Protein Sequence: MLHNSGPYGPNDVPINMGAPVNMTQMSSPMNLGNNLSNLVKIPQQTPQPSVPHYNMPDYSTFGHPPLNMGHSMSPFGNYHHLNFQANYGHSNPNVTHDTTSNNVQNSMLPMNLNIQSDHGPSLMNYHNFETKRFDVNNAPYRENVSRKMPINIPQIHTKAFHKHAGVEANYGQYNSIQENPLYTQDLSKTPERTYIDNNRRKSLENTVKLIENILINSTPKDKLRDFSSTELLDNMQSNDTSVDLRHTKLQNTEDSNKIVQHGSLNLTPASKTNNMQTNNADLQSLSTEIKNKEPILQVNIKEEVVDDMVKVKVEPLHADGDNVPFLRDINAVPKDMVESDAVIIEENNVAEAREAMKTGSNPNTYYECSHCNILFKNPKRFLIHSKWHSFGLTNEKRQELVREKETKKNMKREAKIMERLNSKEVKDGAEGETHPCKDCDKVFALKSSLKNHRQRYHPTRVRECKICHVSVVGWLALRAHTAAHAAGAGYACADCPKRFKYAHSLAKHRDTHLEKTHGCQQCDKKFGSQALLKMHMKCHERTARGATFRCTYCGKGFFESYNLQVHERTHRNERPFQCDICKTSFGTNSSLKRHVKVSHSTAKPFPCPTCHRMFASVTTRARHTSRAHNDRAKDPPRKPAKPPAGQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -