Hsal042608.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990120.1:575428-587771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.059 6.6 8.7 0.2 3 23 41 62 41 62 0.97 2 18 0.014 1.6 10.7 0.1 3 23 65 86 64 86 0.96 3 18 0.027 3 9.8 0.1 3 23 150 171 150 171 0.97 4 18 0.4 44 6.1 0.3 2 20 184 202 183 204 0.92 5 18 0.0033 0.37 12.7 0.2 3 23 213 234 212 234 0.96 6 18 0.0012 0.13 14.1 0.9 3 23 272 292 271 292 0.97 7 18 0.91 1e+02 5.0 0.0 1 17 298 314 298 315 0.93 8 18 0.91 1e+02 5.0 0.0 1 17 409 425 409 426 0.93 9 18 0.91 1e+02 5.0 0.0 1 17 490 506 490 507 0.93 10 18 0.13 15 7.6 0.0 1 17 541 557 541 558 0.94 11 18 0.13 15 7.6 0.0 1 17 602 618 602 619 0.94 12 18 0.28 31 6.6 0.1 1 17 643 659 643 660 0.94 13 18 0.13 15 7.6 0.0 1 17 694 710 694 711 0.94 14 18 0.13 15 7.6 0.0 1 17 755 771 755 772 0.94 15 18 0.44 49 6.0 0.0 1 17 816 832 816 833 0.93 16 18 1.1 1.2e+02 4.8 0.0 1 17 857 873 857 874 0.93 17 18 1.1 1.2e+02 4.8 0.0 1 17 898 914 898 915 0.93 18 18 0.44 49 6.0 0.0 1 17 959 975 959 976 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAGCCTAAAAGAGTGAGAGATGAATTTGAAAGCACGGAAACGTTGGGCAGTACAGCAAAAGTCTCAACGCATCTGTCGCACGTGCGTCTCCACCACCAGTCGGCGTGCGTGTGGTGCGCGCTGTGCGGGGAGGCCTTCGTCGGCACGCGCGGCCTGCGCATGCACACGCGCCGCCGCCATCCTGCCTGCGCGCTGTGCGGGGAGGCCTTCGTCGGCGCGCGCGGCCTGCGCATGCACACGCGCCGCCGCCATCCTGCCGTGAGTCTgccatgtgtgtgtgtgtgtgtgtgtgtcgtgCGTGTGgtgcgcgctgtgcgcggaggccTTCGTCGGCGCGCGCGGCCTGCGCATGCACACGCGCCGCCGCCATCCTGCCGTGAGTCTCTgccatgtgtgtgtgtgtatgtgtgtcgtgcgtgtgtgtgtgtgtcgtgCGTGTGGTGCGCGCTGTGCGGGGAGGCCTTCATCGGCGCGCGCGGCCTGCGCATGCACACGCGCCGCCGCCATCCTGCCGTAACAGCGACGCAGGAGCCAGCGATATGTTTCTGCTCCACATGCCGCATCCAGTTCGGGAACCCGAGCGCCCTCGGCCGGCACAGGGCGGCCGGGTGTCGCGCGGAttttcgACCTTGTACGGAGTGCGGGGAGAGCTTCGAGTCTGATGAAGCGATGCTGCAGCATCGGCGGAGGAACCATACAGATGTATCGGTGCTGGGCCCTGCGAGTGAGGCCTTTGCGGCAGAGCCCGCGCGGCGAGACGCGCCCGCCCCGCCTCGCACGCCCGCAAGCGGCGACAAGCGCGCCATGTGCGAGCTCTGCGGGAAGAAGTACCATTCAGCAGCGGCGCTGTCGTACCACCAGCGCTCGCACTCCGGCGCGCGGCCCTACGCCTGCACGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTATCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACGCCTGCACGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTATCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACGCCTGCACGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACACCTGCCCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTAACCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCCGTTCGGCTCGCACTCCGGCGCGCGGCCCTACACCTGCCCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACACCTGCACGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACACCTGCCCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTAACCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCCGTCCGGCTCGCACTCCGGCGCGCGGCCCTACACCTGCCCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCTCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACGCCTGCCCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACGCCTGCTCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACGCCTGCTCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCGGCTCGCACTCCGGCGCGCGGCCCTACGCCTGCCCGCGCTGCGCACGCGCCTTCGCCCACGCGCACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGCACAGCCTGTCTCACTCGCTGCAGGTACTATACAGCCTGTCCCACTCGCTTCAGGTACTGCACAGCCTGTCCCACTCGCTGTGGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGCACAGCCTGTCCCACTCGCTGTGGGTACTGTACAGCCTGTCCTACTCGCTGCAGGTACTGTACAGCCTGTCCCACTCGCTGCAGGTACTGTACAGCCTGTCCCGCTCGCTGCGGGTACTGTACAGCCTGGCCCACTCGCTGCGGGTACTGTACAGCCTGTCCCACTCTCTGCCAGGACTGTACAGCATGTCCCACTCGCTGCCAGGACTATACAGCATGTCCCACTCTTTGCAGGTACTGTACAGCATGTCCCACTCGCTGCCAGGACTGTACAGCATGTCCCACTCGCTGCCAGGACTGTACAGCATATCCCACTCACTGCAGGTACTGTACAGCATGTCCCACTCGCTGCCAGGACTGTACAGCATATCCCACTCACTGCAGGTACTGTACAGCATGTCCCACTCACTGCAAGTACTGTAA
- Protein Sequence
- MGEPKRVRDEFESTETLGSTAKVSTHLSHVRLHHQSACVWCALCGEAFVGTRGLRMHTRRRHPACALCGEAFVGARGLRMHTRRRHPAVSLPCVCVCVCVVRVVRAVRGGLRRRARPAHAHAPPPSCRESLPCVCVYVCRACVCVSCVWCALCGEAFIGARGLRMHTRRRHPAVTATQEPAICFCSTCRIQFGNPSALGRHRAAGCRADFRPCTECGESFESDEAMLQHRRRNHTDVSVLGPASEAFAAEPARRDAPAPPRTPASGDKRAMCELCGKKYHSAAALSYHQRSHSGARPYACTRCARAFAHAHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSGSHSGARPYACTRCARAFAHAHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSGSHSGARPYACTRCARAFAHAHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSGSHSGARPYTCPRCARAFAHAHSLQVLYSLSHSLQVLYSLTHSLQVLYSLSHSLQVLYSPFGSHSGARPYTCPRCARAFAHAHSLQVLYSLSHSLQVLYSLSGSHSGARPYTCTRCARAFAHAHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSGSHSGARPYTCPRCARAFAHAHSLQVLYSLSHSLQVLYSLTHSLQVLYSLSHSLQVLYSPSGSHSGARPYTCPRCARAFAHAHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSGSHSGARPYACPRCARAFAHAHSLQVLYSLSHSLQVLYSLSGSHSGARPYACSRCARAFAHAHSLQVLYSLSHSLQVLYSLSGSHSGARPYACSRCARAFAHAHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSHSLQVLYSLSGSHSGARPYACPRCARAFAHAHSLQVLYSLSHSLQVLHSLSHSLQVLYSLSHSLQVLHSLSHSLWVLYSLSHSLQVLHSLSHSLWVLYSLSYSLQVLYSLSHSLQVLYSLSRSLRVLYSLAHSLRVLYSLSHSLPGLYSMSHSLPGLYSMSHSLQVLYSMSHSLPGLYSMSHSLPGLYSISHSLQVLYSMSHSLPGLYSISHSLQVLYSMSHSLQVL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -