Hsal042716.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990120.1:1958612-1980802[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00044 0.049 15.4 0.3 2 23 313 335 312 335 0.97 2 14 0.0054 0.6 12.0 2.3 2 23 343 365 343 365 0.95 3 14 0.17 19 7.3 5.0 2 23 397 419 396 419 0.96 4 14 0.00012 0.013 17.2 0.8 2 23 428 450 428 450 0.94 5 14 0.00012 0.013 17.2 0.8 2 23 559 581 559 581 0.94 6 14 0.00012 0.013 17.2 0.8 2 23 690 712 690 712 0.94 7 14 0.2 23 7.0 1.2 3 20 725 742 723 744 0.93 8 14 0.078 8.8 8.4 0.1 3 23 757 778 755 778 0.91 9 14 0.024 2.7 10.0 0.2 1 23 783 806 783 806 0.96 10 14 1.2 1.4e+02 4.6 0.0 3 11 844 852 843 856 0.85 11 14 0.024 2.7 10.0 0.7 3 23 857 877 855 877 0.97 12 14 0.00012 0.013 17.2 0.2 1 23 883 906 883 906 0.95 13 14 0.0011 0.13 14.1 0.8 1 23 912 934 912 934 0.97 14 14 3.9e-05 0.0044 18.7 1.2 1 23 940 963 940 963 0.95
Sequence Information
- Coding Sequence
- ATGAATACAGTGAAGTTAGAGCTCGAATCAGAGAATTTGGTTGCGTGTCGTATATGTCTCGCTTGGGAAGGAAAGCTCTTTAATATACGGGAATGGGGACTCGATCAAGTGTATGTCGAGCTTATGGGGACCACGCTGTCAGCATGGGACGGGTTCCCGCAGCACGTGTGCAGCTTCTGCCGCGCGCAGCTCGTGAAGGCGCAGCGGCTGCGCGCGCGTTGCCGCCGCGCCGACGCCGTGCTCAAGCAGGCGCTCATGCACCAGCACTTTATTACTACCGGCTACATACGCACAATCGACCGATCGGCACACAAACTGACATACTCACTCTCCCACCACACTTCTAAAGCTGCTTTGGAAGTTATCTACAACGAAAACAACGCTAAAACAAGTACACCCAATAAAgtccatgatgatgatgacgtcaAAGACGAACTAGGTGGCCTTGACGATGACAATGACATGGATGATGATCTAATAGCAGATGTAGACGATACGAAACCTTTTGATATAAACTTTGCCGATGTTGATCTTGTTAAAGATGATGATTTATCAGACATTACAGATAAGAATAAAGTTACAATTGAAATAGATATAATTCCGCCCAAAACCGTTAGAGCTAAGACTTCTAGAACAAAAACGACGGCTAAAAGAAAAAAGGCAGACAAGGATTTGGACTTTGAAGAAGAATCTCCAAAAAGAAAAACTAGAACTAAGAAAAAAGAAGAGAAATTGAAGGAGAAAAAAGAAGCTACAGTTAAATTTGTAGTGAAGAAGAAAGAGAAACGTTTGAAGAAGAACAAGTTTAAAAAGGAAGAAGATTTCAGAGAGTTTGAGAAGAAATATGATTTCCAAGTGAAGTGTTTGACTGAGGAAGAAATGGTTGAAGATATGGAGAGGAGGAAGCTGTCAGATAAGGCGATTAAAGGTGTGGTGAAGTGTCAGTTGTGTTATAAAGGTTTTATGAATGCAACCACGTTAGAAAATCACATGAAGATCGCTCATGATCcaTCGGTGGGATCGAATGAGTGCCATTTGTGTCACGTGCGGTACCGGTTCGCGGTGAATCTGCGCCAGCACATACAGAACGCGCATCAGCTTATGTTCCGCTGCCGCCAGTGCGGAGACATCGTGTGGGGCGAGTCGCACGCGGTGCTACACGCCGGGCATCACGCGGGTACCACACTCAAGTGCCGCCATTGTGATAAACAATTCCTTAAGAAGACGACACGAACGACGCACATGCGTATGGCGCATCCGGTGGAGAACGCGGCCGGAGGCACCTGCGAGATCTGCGGGGAGACCTTCACCAGCCGTCGAGGGCTGCGCAGCCACAAGGCGCGCACGCACAACAAGGtacaatatgtacatacatacatacatacacagcCGGGGAGACCGCGCCCGGAGGCCCCTGCGCGATCTGCGGGGAGACCTTCACCAGCCGTCGAGGGCTGCGCAGCCACAAGGCGCGCACGCACAACAAGGtacaatatgtacatacatacatacatacacagcCGGGGAGACCGCGCCCGGAGGCCCCTGCGCGATCTGCGGGGAGACCTTCACCAGCCGTCGAGGGCTGCGCAGCCACAAGGCGCGCACGCACAACAaggtacaatatctacatacatacatacatacacaggCGGGGAGACCGCGGCCGGAGGCACCTGCGAGATCTGCGGGGAGACCTTCACCAGCCGTCGAGGGCTGCGCAGCCACAAGGCGCGCACGCACAACAaggtacaatatctacatacatacatacatacacagcCGGGGAGACCGCGGCCGAAGGCACCTGCGAGATCTGCGGGGAGACCTTCACCAGCCGTCGAGGGCTGCGCAGCCACAAGGCGCGCACGCACAACAaggtacaatatctacatacatacatacatacacagcCGGGGAGACCGCGGCCGGAGGCACCTGCGAGATCTGCGGGGAGACCTTCACCAGCCGTCGAGGGCTGCGCAGCCACAAGGCGCGCACGCACAACAaggtacaatatctacatacatacatacatacacagcCGGGGAGACCGCGGCCGAAGGCACCTGCGAGATCTGCGGGGAGACCTTCACCAGCCGTCGAGGGCTGCGCAGCCACAAGGCGCGCACGCACAACAagcaaaTGCAATCAACGATACCAGGGCTGTTCTGCCGCAAGTGCCGAGTGCAGTTCGACAGCAAGGAAGCGCTGCAGCGGCACAAAGAACACCAGCTCGGCCAGAGATGTAACAACGACCAGAGCGCGTGTGAGAAATGCGGAGCATTGTACCCGAACGAGGACGACCTGATCCGTCACAAGCATGCGGCCCACGGAGTGGAGCTCTTCACATGTGACGCGTGCGAGAAATCGTTCCTGTCGAAGGTGTCGCTCTCAGTTCACATCGACCGCGTGCACCTGCACATCAAGCCCGTGCGCCCCAACCGGCCGCGCCCCGCCGGCGAGCGCCCCGCCCCGCGCGCCCCCTCCCGCGACAAGCCGCGCCAGAGGTTCAAGCTCGACAACATGTGCGAGATCTGCGGGAAGGCGTACTCGCTCCAGAACATGTGCGAGATCTGCGGGAAGGCTTCCTCGTGCCTGGCGCTGCTGAAAACGCACCAGATGCGTCACACCGGCGACCGACCCTTCAAGTGTACGCAGTGCCCCAAGGGCTTCATCACCGCCACGCTGCTGCGGGAGCACCGCGACATCGTGCACGCGCGCCTGCGCAAGTACCGCTGCCCGGAGTGCCCCAAGACCTTCCTGCACCAGTCCTCCGTGTACGTGCACCGAGCTATCCATACGGGCGAAAAAGCGTACGAGTGCAGTTTCTGCGGCAAAGCCTTCACCCAAGCCGGGACTTTGCACACGCACGTCAAGTTCGTGCATATGAAGGTCAAACCGCCGCCGCGGAAACGGAACAAGACCATCGTAGAGTAA
- Protein Sequence
- MNTVKLELESENLVACRICLAWEGKLFNIREWGLDQVYVELMGTTLSAWDGFPQHVCSFCRAQLVKAQRLRARCRRADAVLKQALMHQHFITTGYIRTIDRSAHKLTYSLSHHTSKAALEVIYNENNAKTSTPNKVHDDDDVKDELGGLDDDNDMDDDLIADVDDTKPFDINFADVDLVKDDDLSDITDKNKVTIEIDIIPPKTVRAKTSRTKTTAKRKKADKDLDFEEESPKRKTRTKKKEEKLKEKKEATVKFVVKKKEKRLKKNKFKKEEDFREFEKKYDFQVKCLTEEEMVEDMERRKLSDKAIKGVVKCQLCYKGFMNATTLENHMKIAHDPSVGSNECHLCHVRYRFAVNLRQHIQNAHQLMFRCRQCGDIVWGESHAVLHAGHHAGTTLKCRHCDKQFLKKTTRTTHMRMAHPVENAAGGTCEICGETFTSRRGLRSHKARTHNKVQYVHTYIHTQPGRPRPEAPARSAGRPSPAVEGCAATRRARTTRYNMYIHTYIHSRGDRARRPLRDLRGDLHQPSRAAQPQGAHAQQGTISTYIHTYTGGETAAGGTCEICGETFTSRRGLRSHKARTHNKVQYLHTYIHTQPGRPRPKAPARSAGRPSPAVEGCAATRRARTTRYNIYIHTYIHSRGDRGRRHLRDLRGDLHQPSRAAQPQGAHAQQGTISTYIHTYTAGETAAEGTCEICGETFTSRRGLRSHKARTHNKQMQSTIPGLFCRKCRVQFDSKEALQRHKEHQLGQRCNNDQSACEKCGALYPNEDDLIRHKHAAHGVELFTCDACEKSFLSKVSLSVHIDRVHLHIKPVRPNRPRPAGERPAPRAPSRDKPRQRFKLDNMCEICGKAYSLQNMCEICGKASSCLALLKTHQMRHTGDRPFKCTQCPKGFITATLLREHRDIVHARLRKYRCPECPKTFLHQSSVYVHRAIHTGEKAYECSFCGKAFTQAGTLHTHVKFVHMKVKPPPRKRNKTIVE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -