Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990106.1:5026063-5032506[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.4e-05 0.0027 19.4 3.3 1 23 173 195 173 195 0.98

2 11 0.069 7.8 8.5 0.8 1 23 201 225 201 225 0.94

3 11 0.0012 0.14 14.0 4.3 1 23 234 256 234 256 0.98

4 11 0.00017 0.019 16.7 1.1 1 23 261 283 261 283 0.97

5 11 0.00017 0.019 16.7 2.9 1 23 289 311 289 311 0.99

6 11 0.00013 0.015 17.1 0.1 1 23 317 340 317 340 0.97

7 11 0.49 55 5.8 5.5 2 23 346 365 345 365 0.96

8 11 4.9e-06 0.00055 21.6 2.0 1 23 371 393 371 393 0.96

9 11 1.7e-05 0.0019 19.9 1.6 1 23 399 421 399 421 0.99

10 11 1.7e-05 0.002 19.8 0.9 1 23 427 450 427 450 0.98

11 11 0.0052 0.58 12.1 0.3 1 19 456 474 456 477 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.4e-05	0.0027	19.4	3.3	1	23	173	195	173	195	0.98
2	11	0.069	7.8	8.5	0.8	1	23	201	225	201	225	0.94
3	11	0.0012	0.14	14.0	4.3	1	23	234	256	234	256	0.98
4	11	0.00017	0.019	16.7	1.1	1	23	261	283	261	283	0.97
5	11	0.00017	0.019	16.7	2.9	1	23	289	311	289	311	0.99
6	11	0.00013	0.015	17.1	0.1	1	23	317	340	317	340	0.97
7	11	0.49	55	5.8	5.5	2	23	346	365	345	365	0.96
8	11	4.9e-06	0.00055	21.6	2.0	1	23	371	393	371	393	0.96
9	11	1.7e-05	0.0019	19.9	1.6	1	23	399	421	399	421	0.99
10	11	1.7e-05	0.002	19.8	0.9	1	23	427	450	427	450	0.98
11	11	0.0052	0.58	12.1	0.3	1	19	456	474	456	477	0.95

Sequence Information

Coding Sequence: ATGGCTAGAAAACGTAGACGGAATTATCAGAggaaaactaaaaatgacaAGTTATCAGCAGGTACAATTACAAAGGCCATGAAGTTTTATGGATTTGATGAACTCGGGCTCCGCTCCACGCCTGTCGAAAACGCAGTGATTCCAGTTGAAATGATTGACTTAGTTAATGAAGAGGAAAATAGTGATGTTGAAATAATAGAGCCCATACCAATTGAAagtgttaataaaacaaatccaACCGCTGGAAACAACAACAATGATACAGAGTTAAGTGatcaaaataacagtataagCTGTTCAAAAAACAGAAATGAAACTGAGAAAGGGTGCAAAACTAACACAAGCCAAAATAATAACAAAGCAGAAAGTACCCCAAATTCAGCCCGTACTTGTTCATTGGCAAGTAAATGTAATAATCAAGCTATGAAAGGCAAAAAGTACAAACACAAGCATAAAATGACCAGGAAGCAAATGCTCCAAGTTCAATATCTTGGTAAGAGACCTACAATTACCCAATATGAATGTGATCActgcaaaataacattttgcgCAAAAGCTTCTTTACGAAGACATATGTTGGTGCATATCGATATAAAGCCATATTTGTGCCCCCACTGCCCTGATAAGAAATACCGTGCTCGAGGCAACTGGCGAATCCATATGGCCAAGAAACACCCGAATGAATTTGAGAAGGTGAAGTATACTTGTAGAAAATGCAAGAAACCATTTCAGTTGAAGGAACATCTCAAACTCCATCAAAAAGCTCACGCCAAGGAACATTACAATTGTGTGTTCTGTGATAAAGTGTTTAGAACCCAGTTGCTTTTGACACAACATGAAAAGCTCCATATGGTCCCGGGCCGTTACAAGTGCACTATGTGCAGTATGAGCTATGAATCGCGATCACTCTACTCAAAACATTTAAAGACCCATGTTAAACTCAAAAAATATAACTGTCAATATTGTGGTAAAGCCTACTTGAGACCAAGCTCCATCGCAAGACACATCCGAGTGGGCCATGGTGGAATGCGGATGCAATGTCCGATTTGCCATAAGTTGCTGCGAGGACATTTAACCGAGCATATGAGGACACATGAAAACCAACGGCCGCATGCATGTGACATCTGCGGGCAGAAATTCACACAATCCACTCAACTGACAGTCCACAAGCGTTCCCATACTGGAGCTAGACCTTATACTTGCAGGATTTGTCAACAACCATTCTCACACTCAAATGCTTTGATGCTCCACATTAGACGACATACTGGAGAAAAACCTTTCGAATGCGCTATGTGCCCACAATCTTTCTCGCAGCTGCCACACATGAAATCCCATATGCGCAGTATTCATAAGAAAACGGAGTTCTATAAGTGCAATAATTGTAGCAAATTCTACAAGCTCAAGGCATTGTTGATAGCGCACTCCGAGGTATGTAGAGGCACCGGAGAGAGTGAGAAACAAGAAAAAGCCTCCAAAAAAGAGAAGACTAGCGCGCTGGTTACGCGAATGAGGTTCCTGCTCGCCCTACTGTTCACCATGATCGCCTCAAAAGAGAAACTGTATGACTTAGGTTTCAACAAACGCCTCATAGACGACATCCTTGTGGATTCAGTGGAAGCCATGGGCCTAGAGCCCTGCAAGGACCTAAGTCTCAGTCCCCTCGCGCGACTGAAGCTCAACGTGCTAATGCTGCTGCAAGGTACGGTGCCCAAGcaacagatggcgctgttcaTCAAGGAGAAGAAAACCACGGAAGAGTTGCTCGAGTTGCTTACCGATGAgaaagaggagaaaaagtag
Protein Sequence: MARKRRRNYQRKTKNDKLSAGTITKAMKFYGFDELGLRSTPVENAVIPVEMIDLVNEEENSDVEIIEPIPIESVNKTNPTAGNNNNDTELSDQNNSISCSKNRNETEKGCKTNTSQNNNKAESTPNSARTCSLASKCNNQAMKGKKYKHKHKMTRKQMLQVQYLGKRPTITQYECDHCKITFCAKASLRRHMLVHIDIKPYLCPHCPDKKYRARGNWRIHMAKKHPNEFEKVKYTCRKCKKPFQLKEHLKLHQKAHAKEHYNCVFCDKVFRTQLLLTQHEKLHMVPGRYKCTMCSMSYESRSLYSKHLKTHVKLKKYNCQYCGKAYLRPSSIARHIRVGHGGMRMQCPICHKLLRGHLTEHMRTHENQRPHACDICGQKFTQSTQLTVHKRSHTGARPYTCRICQQPFSHSNALMLHIRRHTGEKPFECAMCPQSFSQLPHMKSHMRSIHKKTEFYKCNNCSKFYKLKALLIAHSEVCRGTGESEKQEKASKKEKTSALVTRMRFLLALLFTMIASKEKLYDLGFNKRLIDDILVDSVEAMGLEPCKDLSLSPLARLKLNVLMLLQGTVPKQQMALFIKEKKTTEELLELLTDEKEEKK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -