Hsal034424.2
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990112.1:7925726-7940256[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.4 6e+02 2.6 0.7 1 23 89 113 89 113 0.87 2 15 3.4e-05 0.0039 18.9 1.6 1 23 119 143 119 143 0.98 3 15 0.025 2.8 9.9 0.2 1 23 149 171 149 171 0.93 4 15 0.00043 0.049 15.5 3.4 1 23 177 199 177 199 0.98 5 15 0.044 5 9.1 0.2 1 23 336 358 336 358 0.96 6 15 1.4 1.6e+02 4.4 7.2 1 23 365 387 365 387 0.95 7 15 0.00095 0.11 14.4 1.8 1 23 426 449 426 449 0.95 8 15 0.0011 0.12 14.2 0.6 1 23 456 479 456 479 0.98 9 15 0.0026 0.29 13.0 0.2 2 23 499 521 498 521 0.96 10 15 0.0086 0.96 11.4 1.3 1 23 534 556 534 556 0.98 11 15 0.00022 0.025 16.4 1.6 3 23 562 583 561 583 0.95 12 15 0.0012 0.14 14.1 0.1 1 23 589 611 589 611 0.97 13 15 0.00011 0.012 17.4 0.6 1 23 616 638 616 638 0.98 14 15 0.00013 0.015 17.1 0.1 1 23 644 666 644 666 0.97 15 15 0.0046 0.51 12.2 1.0 3 23 674 695 674 695 0.95
Sequence Information
- Coding Sequence
- ATGTTTGTACCAGCTGAGTGTGTTGCAGAGTCGATTGTTTGTTCCTCTGATGTAACGGATCATGACATTACTATGGTAGGAATCGCGCTTCTTTCAGAAAAACCTATCAAACCTGAACGGTCTAAAACTGTTATTGACTACGACTCTTTGAAAGCTGAGTTAAAATGCACAGACAGTCCAAACATTGCAATATCTGCAGAAAAGAAAGATATATGTTCTAGGCAGTTCCATGACAACACCGATATGCTGAACGCCAACGGGCAATACTCGTGCCTGGAGTGTTCTGGAGTGACCTTCGCCACGGAGACAGAGTTGTTTGACCACGTGCACTTCCAGCACGACAAACAGAACCGCTACCAGTGTTCTGTTAAGGACTGCGGGAAAACTTTCTTTCTTAGGGCATCTCTTACCAAGCACAGCCGTACGCACACCGACACGCGGCGCTACGTGTGTGGCACGTGCGGCAAGAGGTTCCTGGACAAACAGACGTTGGACGAGCACGGTGTCACTCATCTACAGATCAAGCCGTTTCAATGCCACATCTGCCTAAAGCAGTTAACACGGCGCTCCCGTCTTCGCATGCATATGCGCGCTCACGAGGAGGCCTTGTGTCCCGCGCTAGTGCCGGTCTGCGCCGCCTGCCGCCGCGCCTTCCAGGACGTGCCCGCCGCCGTGGAGCACGTAAAGAAATCAACGGAGTGTCTGCAAGCGTTCGCGAACGAGTTGAAAGCCGACGACAAGCCTACCGCCGTGCTCTCGCCCACCAGTGGGCTGGTGCGGCCCACGCAGGAGGAAACGACGAGTCTTAGACACTGTGTGGAACGAGAAGCGCGTTGTGCAGGCGCCGCTGCTTTACTGGCTCCTTTACCGCCGGATCTCCGTATCGCCGTACGCTGTGTGCGGGTCGAGAAGGCCTTCCGCTGCGAGTACTGCGCCGCTGCTTTACTGGTTCCTTTACCGCCGGATCTCCGTATCGCAGTGCGCTGCGTGCGGGTCGAGAAGGCCTTCCGCTGCGAGTACTGCGAGGACGTGTTTTATCTGGAAGAGGATCTGAACAACCACCGAGTGATCCACAAAGGGATAAAGAATCCGTTCACGTGCCACATCTGTAAAGTCAGCTTCGCCACCTACTCtagATGTACAACGCACAAGACCACGCACGGCTTCTACAAGCGTCCCTTAGCGGAAGCCAAGAAGAGCCAGCCAAGCCAGGCACACGCCGAGCCGTCCGCCCGCGGCATCCTCGGCTACGGCGGCTTCCCCGTCGTCAAGCACTTCCTCTGCGAGGACTGCGGACGTTCGTACTTGCACTGGACGTACCTGCAGGTGCACCGGCGCATGAAGCACGCCAACGAGAACTTCATATACCAGTGCAACCAGTGCTCGGAAACCTTTCCCAACAGcTGGAGTGTGGCGTACCACAGAAAGAAGGTGCACGGCAAAACTGGCTTGAGCAATGGAGTCACCAAGACTGTCAGTAACGACTACAGGATTCCCTGCCGTGACTGCGACGAAGTGCTGCCGAACAAGACCGCACTCTACAAGCACAGGAAAAAGGAGCATAGCTACGTGACTCTGCCGGTCGAGGACAAACAAGCACACACGTGTCACGTATGCAGCGCGGTGTTCGTGTTGCGCACGGAGTTGGACGCGCACACACTCACGCACACATCGAGGGCCGCGTGCGCTCACTGCGGCGAAAGCTTCTCACACCAGCAACTGCTCTACAACCATCTTAAAGAGATTCACGGGCAAGACCTGCAGTATAACTGCGATGAGTGTTCCTCGCGTTTCTCGTCTCCGGCGGAACTGGCGCAGCACTCCCGCGGCCACTCGCAGCGGCCGCACACTTGCGGAGTCTGCGGTCACGCCTTCCGCACCGCCTCCGTTCTCGCTGAGCACACCAGgATTCATACCGGCGAGCGACCTTTCCCATGCGACGTGTGCGGAGTGGCGTTCCGAAGGGCGACTGCTATGCGCAACCATCGCTTGATCCACACCGGCGTGCGAGCGTGGGGCTGCGCGCGCTGCCCCAAGCGTTTCCGCATCCGCTCCGACCTCAACACGCACGCGCGCCTCAAGCACCCGCTGCACCTCGCCGTCATTGAGGTACAGGGCCTGAATCCGAGCTCGGAGGAAGTGCTGCGGAGCCTCGCTGCAAACAACATTGTGCGCGAAAACGTTATTGAAATCACCAAGATATCCTTTCCTAGGGTTCAGTACCTCTCGCTCAAATGTCACGCGGTACTCGTGTCGCGTGACAAATATCGCCTGTCTCTCGCGGCTAGTCGCGCTAGTCCGGCTGTCGTTGAAGGTTCGTTAGCTTTCAGCAGGATAGCAGATTAG
- Protein Sequence
- MFVPAECVAESIVCSSDVTDHDITMVGIALLSEKPIKPERSKTVIDYDSLKAELKCTDSPNIAISAEKKDICSRQFHDNTDMLNANGQYSCLECSGVTFATETELFDHVHFQHDKQNRYQCSVKDCGKTFFLRASLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHMRAHEEALCPALVPVCAACRRAFQDVPAAVEHVKKSTECLQAFANELKADDKPTAVLSPTSGLVRPTQEETTSLRHCVEREARCAGAAALLAPLPPDLRIAVRCVRVEKAFRCEYCAAALLVPLPPDLRIAVRCVRVEKAFRCEYCEDVFYLEEDLNNHRVIHKGIKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLAEAKKSQPSQAHAEPSARGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFIYQCNQCSETFPNSWSVAYHRKKVHGKTGLSNGVTKTVSNDYRIPCRDCDEVLPNKTALYKHRKKEHSYVTLPVEDKQAHTCHVCSAVFVLRTELDAHTLTHTSRAACAHCGESFSHQQLLYNHLKEIHGQDLQYNCDECSSRFSSPAELAQHSRGHSQRPHTCGVCGHAFRTASVLAEHTRIHTGERPFPCDVCGVAFRRATAMRNHRLIHTGVRAWGCARCPKRFRIRSDLNTHARLKHPLHLAVIEVQGLNPSSEEVLRSLAANNIVRENVIEITKISFPRVQYLSLKCHAVLVSRDKYRLSLAASRASPAVVEGSLAFSRIAD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -