Hsal014451.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- nft-1
- Assembly
- GCA_905404275.1
- Location
- FR990099.1:6968465-6994228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.9e-06 0.0011 20.6 1.8 1 23 130 152 130 152 0.96 2 13 6.3e-05 0.0071 18.1 0.6 1 23 185 207 185 207 0.97 3 13 0.0042 0.47 12.4 1.4 3 23 215 235 213 235 0.95 4 13 4.7e-05 0.0053 18.5 4.9 1 23 240 262 240 262 0.98 5 13 8.5e-05 0.0096 17.7 1.6 1 23 267 289 267 289 0.98 6 13 1.1e-05 0.0013 20.4 4.2 1 23 295 317 295 317 0.98 7 13 0.025 2.8 9.9 1.9 1 23 323 345 323 345 0.97 8 13 2e-05 0.0023 19.6 1.8 1 23 351 373 351 373 0.96 9 13 0.0012 0.14 14.0 4.1 1 23 378 400 378 401 0.96 10 13 0.0078 0.88 11.5 0.0 2 21 407 426 406 427 0.93 11 13 0.072 8.1 8.5 3.1 2 23 437 458 436 458 0.97 12 13 0.0003 0.034 15.9 0.1 2 23 464 485 463 485 0.96 13 13 0.0023 0.26 13.2 0.5 1 23 490 513 490 513 0.96
Sequence Information
- Coding Sequence
- ATGTCTCTGGAGACAAGCATGAAAGAGTGTTCAGCTTTCATAAAGCAGGAGTATTTGGAGGAGGAGCAAGGAGTCCATGTGAAGAACTCAGGTTACGTGGAGGTAGAGGCTGTGCTTGTCAAACAAGAACCGATCGAAGAAGCAGTGAGAATTAAACCAGTGAGAACATATTTCAATGCGAAAAAAGCAGCTGTTGTGAAGACAGAGGTAGTGGAACCGGAAACAGTGTGGGTCAAGGAGGAACCAGCATGCTGGAAGGTGGAGACGGATGAGCAAGGCCTACTTCAGCCCTTGTTTACAAACCTTGAGACTAAGGttgcCGAGCCAATATGTCAGCCAGAGCCTGTCAATGCCGGTAACCCAACTGACCAGCCAACTGAAGAACACTTCGAGTGCCATGACTGTGGGAAGCAATACACAAACAAGAGGGGCCTTAGAGCGCATATCTTCTTGCATCGCAGGAAGAGGATTGAGTGCCATTTCTGTACAAAGTGGATATTAACTACACATCTCCGTCGTCATCTCGCCTCGCATAATAAGACGCGCAAATTATTCGCCTGCACGCTCTGTGACAAGACATTCAAGATAGAGTCATCATTGAAAGCCCATGTTTTTACTCATACTGGTGAACTGAAGTATGGTTGCAACAAATGTCCTAAGCGTTTCACAAGTAAAAACTCTGCAACGCACCATGCAGCCGTTCACGAACCAGACCGATATAAATGTCACATCTGTAATAAGAGCTTCAACCGCCTCAGCTATTATAACATTCATAAGCAGTTGCATCGTAAAAAGCAGTTCCGCTGTGAAATTTGTCATAAGGAGTTCGCACTAAAGCAGTATCTGAGCGTGCATTTGAGGATACATACTGGTGAGAAGAGATACGCCTGCGATTCGTGCGATCAAATGTTCCGGAGTAAAACTCATCTTAACAGGCACAGACGGACGCACACCGGAGTCAAACCATACTCATGTGATATTTGCCAAGCGAAGTTCACGACTCACGCCTCTAAGAGAATGCATCAGGAGTTACATACGGGCGGCTCAGGTCACGATTGTGAGACGTGCGGAAAGCGGTTCTCTCGGAGAGGTGCTCTGTTGGACCACAGGAAAATGCACACAGTTGAGCAGTATAAATGTAATGTTTGCGGAGAAAAGTTCGCCACACGCAGCTTGAGCCGCACACACAAACGCAAACACCACAGCAGCCCTAAGTTACGTTGCGACTTGTGCGGGAAGGGGTACTCTGAGAAGAGACTGTTGGAAGAACATGTGAAGGCGTGTGGGGTGCACACGGCTGAGAAGAATAAGTGCGGAGTGTGCGGAGAACAGTTCGCCACTCGCAAACAGTGTTACAGGCACGAACGCAAACACAAACACCCTAAGTTACGTTGCGACATGTGTGGGAAAGGGTATGTTGAGAAGAAACTGCTAGAGCAGCATATAAAGGCGCATTACAAAGCCAAGCACGAGTGTGGGGCGTGCGGCGCGATTTACGCATTATCATCGTCGCTTAATCGACATCAGAGGAGAAAGCACAACATGTCTGAACCTGATAAAGGTTGGCGCTACTCTCTTCTACTGAAGCAGTGTAAACATCACATTGTGCGACACTACAGCGAAGCAATGAATGAGAAGCAACGGATTGCTGTGTGTCAGATGACCTCGGTGACTGACAAGGCTACGAACCTGGAGACGGTCAGTCGACTCGTCAGTGATGCTGCTAAGGATAATGTCAAGATGATATTCTTTCCAGAAGCCTGTGACTTCATATGCGATAATAAGAAAGACATATTCAAGTTTGCTGAGCCGATAGTAGGTGGCGCCACTGTCAAAAAATACAGAGAGCTTGCTGTCAAACACAATGTATGGTTGTCCATGGGAGGGCTGCATGAAAAGAACGAAAACGACCCCACAAAAGTGTTCAACACCCACATTATAATAAACAACAGTGGAGACATAGTGGAACAGTACAGAAAGCTGCATCTGTTCGATGTGGAGATCCCGGAGCGTAACTTGAGGCTTAAAGAGAGCGACTTCTGCAGCGGCGGGCGGCATGTCGTGGCGCCGGTGGAGACCCCTGTGGGGAGGATAGGCATGGCGATTTGCTATGACATGCGGTTCCCAGAGCTAAGCACCATACTAACAACGTTACACGCCGAGATTTTGACGTATCCTTCTGCGTTCACGCAGGCTACGGGTGAAGCGCACTGGCACACTCTGttaagAGCGCGAGCGATAGAAAACCAGTGCTACGTAGTCGCTGCCGCACAAGTCGGCTCGCACAACACAAAGAGGCGGAGCTTCGGGCACGCGCTGTGCTGCGACCCGTGGGGGCGTGTCCTAGCCGACTGCGGAGACGCGGTCGGCTACTGCGTGGCCGAGCTCGACCCGCTCGTGCTGTCCAGCGTGCGGCGCGACATGCCCGTGCTGCGCCACCGCAGGAATGACGTGTACTCCCTTTACACACTGAGCTTACACTCTGGCTGCGGCCTCGCGGCCTCGTCGGCCTCGTCGGCCTCGTCGGCGCCGCCCGCCGGCCCCGCCCCCCGCCCCGCCCCCGGCCCCGCGCGCCAGTTCGGACACGTGAACGTGCCGGAATCCTGTGTGTTCTATATCAGTACATTAACATATGCTTTCGTTAATCTTAGGTGTGTGACACCGGGGCACGTTCTAGTCGCCCCGCTACGCTGCGCCGAACGCAACTGCGATCTCACCGATGGAGAGGCACAAGACTTCTACGCCACAATACGACTCGTGCAGAGGCTCATGGAAAAAGTACACGACACCCAATCGTGTACTGTGACCATACAGGACGGGCCGGACGCGGGACAAACTGTCAAGCACCTCCACTGCCACATAATGCCTCGGAAGAAGGGTGACTTCATACAAAACGACCTAATTTATCTGGAGCTCGCGAAACACGACCAGTTTTCATCGAGCCACCCCGCCAAGCCGCCGCGGCCGCTGGGTGAAATGGAGTCTGAAGCGGCCATGCTCAGAACGGAGCTCCAGACGATGACGCAGAACGatcaaaaaGCTTTAGCCACCTCGCGCTCCACCCCCTCCACCCCCGTCACACACGCTTCCCCCCAAGCCCTCCTCCCCAGTATTTCATCGAGCCACCCCGCCAAGCTGACGCGGCTGCTGGGTGAAACGGAGACTGAAGCAGCCATGCTGAGAATGCAGTATGAATTTGGAGCTCCAAATGATGACGCAAAGCAATCGAATAGTTACTAA
- Protein Sequence
- MSLETSMKECSAFIKQEYLEEEQGVHVKNSGYVEVEAVLVKQEPIEEAVRIKPVRTYFNAKKAAVVKTEVVEPETVWVKEEPACWKVETDEQGLLQPLFTNLETKVAEPICQPEPVNAGNPTDQPTEEHFECHDCGKQYTNKRGLRAHIFLHRRKRIECHFCTKWILTTHLRRHLASHNKTRKLFACTLCDKTFKIESSLKAHVFTHTGELKYGCNKCPKRFTSKNSATHHAAVHEPDRYKCHICNKSFNRLSYYNIHKQLHRKKQFRCEICHKEFALKQYLSVHLRIHTGEKRYACDSCDQMFRSKTHLNRHRRTHTGVKPYSCDICQAKFTTHASKRMHQELHTGGSGHDCETCGKRFSRRGALLDHRKMHTVEQYKCNVCGEKFATRSLSRTHKRKHHSSPKLRCDLCGKGYSEKRLLEEHVKACGVHTAEKNKCGVCGEQFATRKQCYRHERKHKHPKLRCDMCGKGYVEKKLLEQHIKAHYKAKHECGACGAIYALSSSLNRHQRRKHNMSEPDKGWRYSLLLKQCKHHIVRHYSEAMNEKQRIAVCQMTSVTDKATNLETVSRLVSDAAKDNVKMIFFPEACDFICDNKKDIFKFAEPIVGGATVKKYRELAVKHNVWLSMGGLHEKNENDPTKVFNTHIIINNSGDIVEQYRKLHLFDVEIPERNLRLKESDFCSGGRHVVAPVETPVGRIGMAICYDMRFPELSTILTTLHAEILTYPSAFTQATGEAHWHTLLRARAIENQCYVVAAAQVGSHNTKRRSFGHALCCDPWGRVLADCGDAVGYCVAELDPLVLSSVRRDMPVLRHRRNDVYSLYTLSLHSGCGLAASSASSASSAPPAGPAPRPAPGPARQFGHVNVPESCVFYISTLTYAFVNLRCVTPGHVLVAPLRCAERNCDLTDGEAQDFYATIRLVQRLMEKVHDTQSCTVTIQDGPDAGQTVKHLHCHIMPRKKGDFIQNDLIYLELAKHDQFSSSHPAKPPRPLGEMESEAAMLRTELQTMTQNDQKALATSRSTPSTPVTHASPQALLPSISSSHPAKLTRLLGETETEAAMLRMQYEFGAPNDDAKQSNSY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -