Hsal011083.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hedya salicella
Gene Symbol
-
Assembly
GCA_905404275.1
Location
FR990097.1:45638348-45661383[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.025 2.8 9.9 0.3 1 23 167 189 167 189 0.95
2 14 0.00068 0.076 14.8 3.0 1 23 582 604 582 604 0.96
3 14 0.0093 1 11.3 4.0 1 23 618 640 618 640 0.99
4 14 0.0007 0.079 14.8 5.4 1 23 647 669 647 669 0.98
5 14 0.0018 0.21 13.5 7.8 1 23 676 698 676 698 0.98
6 14 1.7e-05 0.0019 19.9 0.5 1 23 704 726 704 726 0.98
7 14 0.0096 1.1 11.2 4.0 1 23 732 754 732 754 0.99
8 14 1.1e-05 0.0013 20.4 0.4 1 23 760 782 760 782 0.98
9 14 0.001 0.11 14.3 0.9 3 23 790 810 788 810 0.97
10 14 3.7e-06 0.00042 22.0 0.6 1 23 816 838 816 838 0.97
11 14 0.0019 0.21 13.4 5.0 1 23 844 866 844 866 0.96
12 14 0.0012 0.13 14.1 0.3 1 23 872 894 872 894 0.97
13 14 2.3e-05 0.0026 19.5 1.2 1 23 900 922 900 922 0.99
14 14 0.0007 0.079 14.8 2.6 1 21 928 948 928 949 0.96

Sequence Information

Coding Sequence
ATGGAGGTTCGGCAGGCGTGTCGATGCTGTCTCCAGCGCTCTTCGGACAAGAACTTAAACACGCCATACATACATCTTGGCCAAACAGAGATATATTCAGACATGCTCAAGGAATGCCTTGATGTACACCTACCTCTAAGCAGCAATGAGTGTGGTATCTGCCATGTGTGCGTGGACCGTCTTCGTGATGCGAGCCACTTCAAGCTTCAAGTTCAGCGCAGCCAGGAAAAGTTGCAAACAGATCTGGAAAAGATAGATGCCGTAGAACAGCCTGTACTGAAGGACTGTATGGTGAAACTAGAGCGTGTTGTTCGCCATGATGCGTCACTTAGCGACACGTGCTGGGGCGCAGCGGGGCGAGATGCCGGGCTCACGAGTCACGCTGACTATCATTCTGATGTCGTAGAAGACAGTGACATTACCACTGAGAAAGACAGTAACACTAACATTACCACTGAGAAAGACAGTAACACTAACATTACCACTGAGAAAGAAGCCTTCCTATGTGATATTTGTGAGACGAGGTTTACTCTAAAGACCCGATTATTGGAACATGTTATGATCCATATCCACCAAACCACGGAGCAGGAGTGTAGACGCGGGGCCGATAAAGATGATGATGAAGAGCCTGCAGTCAAGACGGCCTCCGCTAACACGGCTAGTGAGGACACCACGGCTTATGAAGAGCCTCCAGTCAAGATGGCCTCCACTAACTTGGCGAGTGAGGACATCACGTTATGCGAGTACCGACCTGTTGTGGCTCTGGCGAGGGAGTCGACCCCCCCCTTGTTGTATGAAGATGAAGAGCCTCCAGTTGAGACGGCCTACTCTGACATGGCGAGTCAAGACACTGCGATTGATGTAGATGAGGTACCTTCAGTCGAGACGGCCTCCACTGACATGACGAGTCAAGGCACTGCGATTGATGAAGATGAGGTACCTCCAGTTGAGACGGCCTCCACTGTCATGGCGAGTCAAGGCACTGCCATTGATGAAGAGTCTCCAGTCAAGACGGCCTCCACTAACATGGCGAGTCAAGACACTGCGATTGGTGAGTACCAAGCTGTTTTGGCTTTGGCGAGGGACTTGACCTCCTTGTTGGATGAAGGGAAGGAGTCTCCAGTCGAGACGGCTTCCACTAACATGGCGAGTCAAGATGCTGTTATTGATGAAGATAAAGATGAAGAGCCTCCAGTCGAGACGGCTTCCACTAACATGGCGAGTCAAGACACTGCGATTGgTCAATTCATAAGAGCTGGCATGAATGGATTGAACGAGAGTAATGTCACTCGTCGCTGTGAGTGGCAATATGAAGAACCTGCAATGGAGATAGAGATACCATACGATGCCGGAGCGAGTGAAAACGCTACGATACATGAAGAGTCTGCTACAGAGGTAGGAGCAATGGTAGGGGGCGATGACGAGGCGCGTGTGGATACCACGATGTATGAAGAGCCAATAGAGATCTCGGACAATGAGGAGGCGAATGAGGACACTGCGAAGCGTGAAGAGCCCCCAATTGAGATATCAGACAATGAGGAGCCTGAGGAGCCAAGTCAGGAACCTGCTATACGAGAAGAGGTCCCCGTCAAGTCGGAGGAGAATGAAGTGTTCAGTGAACAGGACTTCATGTCACTTCCGTTACATGGTATCGAGCCGGGCATTGGGGAGGCGACCGGCGCCGGCCGCGCGCTCGTGGTGTCCTACTCCGTACGACTCGAACGCCTTTGCGAGGAGAAGACGCATGCGTGCCAGATATGTCGCAAGACATTCGGCCACGAATTGAATCTCGCGACGCACATGAAGAGTCACGATAACAGCTCAAAGACTAACACTCGCACCCGGGAACCGTACACCTgcgatatttgcaaaaaacagTACGCGAACAAGCTTTGCATATACAAGCACATAAGAAAACACATGAAGGTACAGAAGACTTACCCCTGTGAACACTGCGGGAAAATATTCTTCCGCAGTAACACTTACTGCCAACATGTCAAAAGCCACACGAACGTCAAGCTACGTTACTCCTGTGACGTATGCAGCAAGCACTTCAAACGGAGATGCAATTTAAATTATCATAAACTAACGCATTTAGCGAAGAAACCGTACGTTTGCGAAATATGCGACAAACAGTTTACACGACGAGACCGTTATAACGAGCACATCATAATGCACACAGGCAAAAAACAGTACACCTGTGACATATGCAACAAGCAATTCTCGCTCGTATGCAGCTTTATAAGTCATAAAAAAACGCATACCACAGAAAGAAACTACATCTGCGATATATGCGCCAAGGAGTTTACTACAAAAATGAGTATGAATCGACACATCAGAGTCCACACTGGGCGGAGAGATTACGGGTGCGATGTCTGCCACAAAAAGTTCGCGGACAGCTCGATTTTAGCGCGCCACAAGCGGATCCACACAGGCGAAAAACCTTTCAGCTGTGAGATTTGCGGCAAAAAATTCTCTAGAAGACCTTTCTTGCGACAACACTTGATAGTACACTCCGTGCGCAAACCCCACACTTGTGAGGTGTGCCAAAGGACGTTTCGTCGCAAGAAATGCTTGGAATTACACGCTGCGAAACATACTGGCATGCAGCAGTATCAGTGCGACGTTTGTGAGAAAAAGTTTGCCACCAGTACTATATTGGCGAGGCACAAGATAATTCATACAGGTGAGAAGCCTTTTCGTTGTGAAGTCTGTGACATGAGGTTTAACGTGAAAAGCAGCCTTGTGACGCACACGCGCCGCCACACTGGAGATAAACCGTACAGATGCGACGTTTGTAAAAAGAAGTTCGCGCACGGATCTAGTTATAGGAAACATAGACGGTTACCGAAATGTAGCAACCGACGTAAGCAGTGA
Protein Sequence
MEVRQACRCCLQRSSDKNLNTPYIHLGQTEIYSDMLKECLDVHLPLSSNECGICHVCVDRLRDASHFKLQVQRSQEKLQTDLEKIDAVEQPVLKDCMVKLERVVRHDASLSDTCWGAAGRDAGLTSHADYHSDVVEDSDITTEKDSNTNITTEKDSNTNITTEKEAFLCDICETRFTLKTRLLEHVMIHIHQTTEQECRRGADKDDDEEPAVKTASANTASEDTTAYEEPPVKMASTNLASEDITLCEYRPVVALARESTPPLLYEDEEPPVETAYSDMASQDTAIDVDEVPSVETASTDMTSQGTAIDEDEVPPVETASTVMASQGTAIDEESPVKTASTNMASQDTAIGEYQAVLALARDLTSLLDEGKESPVETASTNMASQDAVIDEDKDEEPPVETASTNMASQDTAIGQFIRAGMNGLNESNVTRRCEWQYEEPAMEIEIPYDAGASENATIHEESATEVGAMVGGDDEARVDTTMYEEPIEISDNEEANEDTAKREEPPIEISDNEEPEEPSQEPAIREEVPVKSEENEVFSEQDFMSLPLHGIEPGIGEATGAGRALVVSYSVRLERLCEEKTHACQICRKTFGHELNLATHMKSHDNSSKTNTRTREPYTCDICKKQYANKLCIYKHIRKHMKVQKTYPCEHCGKIFFRSNTYCQHVKSHTNVKLRYSCDVCSKHFKRRCNLNYHKLTHLAKKPYVCEICDKQFTRRDRYNEHIIMHTGKKQYTCDICNKQFSLVCSFISHKKTHTTERNYICDICAKEFTTKMSMNRHIRVHTGRRDYGCDVCHKKFADSSILARHKRIHTGEKPFSCEICGKKFSRRPFLRQHLIVHSVRKPHTCEVCQRTFRRKKCLELHAAKHTGMQQYQCDVCEKKFATSTILARHKIIHTGEKPFRCEVCDMRFNVKSSLVTHTRRHTGDKPYRCDVCKKKFAHGSSYRKHRRLPKCSNRRKQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-