Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990099.1:6963874-6965501[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.7e-07 3e-05 25.6 3.8 1 23 149 171 149 171 0.98

2 12 0.16 18 7.4 2.7 2 23 183 203 183 203 0.97

3 12 4e-05 0.0045 18.7 1.4 1 23 212 234 212 234 0.98

4 12 0.055 6.2 8.8 0.7 3 23 242 262 240 262 0.95

5 12 0.00026 0.03 16.1 1.7 1 23 267 289 267 289 0.98

6 12 7.7e-06 0.00086 21.0 1.2 1 23 294 316 294 316 0.98

7 12 1.4e-06 0.00016 23.3 6.5 1 23 322 344 322 344 0.98

8 12 0.00085 0.095 14.5 2.0 3 23 352 372 350 372 0.93

9 12 0.0037 0.42 12.5 2.7 1 23 378 400 378 400 0.97

10 12 0.00091 0.1 14.4 1.6 1 23 405 427 405 427 0.99

11 12 9.3e-06 0.001 20.7 0.3 1 23 432 454 432 454 0.98

12 12 2.8e-05 0.0032 19.2 2.9 1 23 460 483 460 483 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.7e-07	3e-05	25.6	3.8	1	23	149	171	149	171	0.98
2	12	0.16	18	7.4	2.7	2	23	183	203	183	203	0.97
3	12	4e-05	0.0045	18.7	1.4	1	23	212	234	212	234	0.98
4	12	0.055	6.2	8.8	0.7	3	23	242	262	240	262	0.95
5	12	0.00026	0.03	16.1	1.7	1	23	267	289	267	289	0.98
6	12	7.7e-06	0.00086	21.0	1.2	1	23	294	316	294	316	0.98
7	12	1.4e-06	0.00016	23.3	6.5	1	23	322	344	322	344	0.98
8	12	0.00085	0.095	14.5	2.0	3	23	352	372	350	372	0.93
9	12	0.0037	0.42	12.5	2.7	1	23	378	400	378	400	0.97
10	12	0.00091	0.1	14.4	1.6	1	23	405	427	405	427	0.99
11	12	9.3e-06	0.001	20.7	0.3	1	23	432	454	432	454	0.98
12	12	2.8e-05	0.0032	19.2	2.9	1	23	460	483	460	483	0.96

Sequence Information

Coding Sequence: ATGTCGCTGGAGACAGTGTGTATAAAGGAGCATCTAGTCCTTGTTAAGCAAGAATTTATAGAGGAAGAACATGGACAACAGGTGAAGAAGGAACCAGGTTATAAGATGGAGACTGTAGTGATAAAGCAGGAACCAGATGAGATTGATGAAGAAGTGCAAGGGAAGGAGTTTAAGGAACCAGATAAGATTGGAGAAGCTATGTGCATTAAGATGGAGATTAATGTGGAAGAAGATTTTGCGAAAACAAAGTTAGTGGAACTAGAAACACAGCATGGGAAGGTGGCGGCATGCTTGAAACCAGGGTCCAATGGGCTTAGCATGCATCAACCTGCATATGTCACTGTTGAAGTTCCTGCTGCCAAGCCAATATGCAAGCCGGAACCTGTCAATACTGTTCTGGACCCGAACCATGACACTGTCAGCTTCAACCAACCAACTGAACACTATGAATGCCATGACTGTGGGAAGCAATACACAAACAAGAGTGATCTGGAAGTGCACATGCACAAGCACTCCAGCATGAGGAGAGGCAGACGCACTCTAGAGGAGTGCCATGTCTGCAAGAAAAGTGTATTGCGTGTAAATATGCGTCGACATCTCACCACACACGACAAGACACATGTTCATCGACTGTTCCCATGTACACTTTGTGATAAGACCTACGAGACCAAGCGATCATTCAAGACTCATGTAGCTACCCACACCGGTGAATTGAACTACGGTTGCGAGCATTGCTCGCTGCGCTTCCCGACTAAAAGGACAGCACTACGCCATGCGATCATCCACAAACCAGAACGATATGAATGCGAAGTTTGCCAGAAGAGCTTCAGACTCCTCAAGAACTACAGCGATCATAAGCGGTTGCATCTTAAAAAGGAGTTCACATGTGAGATTTGTCATAAAGAGTTTGTTTTGAAATGGTACTTGGTTCAGCATATGCGAATTCACACCGGAGAAAGGAACTTCTCATGCGATTCCTGTGACAAAAAGTTCCGAAGTAAATCGCATTTGAATAGACATAAGCGGACGCACAGTGGCCTAAAACCGCACTTATGTGACATATGCCACGAGTCATTCGCGAATTTGTTTTCCTTGAAGGCGCATCGCGACGAGCACACGCGCGGTCGGCCGCACGTGTGTGAGACGTGCGGTAAGCGATTCTTGCAGAGATCAACCATGTTGGATCATAGGAAGATGCATACTTCGGAGCAGTATAGGTGTAAGGTTTGTGGGATGCAGTTTGCTACACGCGGTTTGTGTGTTGCCCACAGACGAACACACGACGCGCCTAGGTTCCGTTGTGATCAGTGCGGGAAAGAGTATGCCCAGAGGACTTCGCTGGAGGAGCATATAAAAGGGCATGAAGGCGTGGCAGCGCATAATTGTGCCGTGTGTGGCGCGGCGTACGCGCACGCCTCGTCGCTCTGCAGACACATGAGGACACGGCATGCGTCCGTACCCGTAAAAGATTCTTTGACGGCTGGGAATGAGGAGGGCGTCCATTGA
Protein Sequence: MSLETVCIKEHLVLVKQEFIEEEHGQQVKKEPGYKMETVVIKQEPDEIDEEVQGKEFKEPDKIGEAMCIKMEINVEEDFAKTKLVELETQHGKVAACLKPGSNGLSMHQPAYVTVEVPAAKPICKPEPVNTVLDPNHDTVSFNQPTEHYECHDCGKQYTNKSDLEVHMHKHSSMRRGRRTLEECHVCKKSVLRVNMRRHLTTHDKTHVHRLFPCTLCDKTYETKRSFKTHVATHTGELNYGCEHCSLRFPTKRTALRHAIIHKPERYECEVCQKSFRLLKNYSDHKRLHLKKEFTCEICHKEFVLKWYLVQHMRIHTGERNFSCDSCDKKFRSKSHLNRHKRTHSGLKPHLCDICHESFANLFSLKAHRDEHTRGRPHVCETCGKRFLQRSTMLDHRKMHTSEQYRCKVCGMQFATRGLCVAHRRTHDAPRFRCDQCGKEYAQRTSLEEHIKGHEGVAAHNCAVCGAAYAHASSLCRHMRTRHASVPVKDSLTAGNEEGVH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -