Hsal041429.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990118.1:10349333-10367259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.28 31 6.6 0.0 1 20 30 49 30 50 0.96 2 12 0.038 4.2 9.4 0.0 1 23 1024 1046 1024 1046 0.97 3 12 0.00038 0.043 15.6 3.7 1 23 1059 1081 1059 1081 0.97 4 12 0.0088 0.98 11.3 9.3 1 23 1087 1109 1087 1109 0.99 5 12 5e-05 0.0056 18.4 6.6 1 23 1116 1138 1116 1138 0.99 6 12 3.2e-05 0.0036 19.0 0.2 1 23 1144 1166 1144 1166 0.93 7 12 3.8e-06 0.00043 21.9 0.0 1 23 1172 1194 1172 1194 0.98 8 12 2.3e-05 0.0026 19.5 1.2 1 23 1200 1223 1200 1223 0.95 9 12 0.00012 0.014 17.2 1.8 1 23 1229 1252 1229 1252 0.96 10 12 5.6e-05 0.0063 18.3 1.1 2 23 1259 1280 1258 1280 0.97 11 12 4.1e-05 0.0045 18.7 1.0 1 23 1286 1308 1286 1308 0.97 12 12 0.0067 0.75 11.7 0.2 1 23 1314 1338 1314 1338 0.94
Sequence Information
- Coding Sequence
- ATGCTGGCAGGCGAGCGGACGGGGCGCTTCGCGGGCGACGCGGAGTTCATCATGCGGCACATGCGCGCGGCGCACGACGCGCGCGTCTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGGTCCGTAGCTCCTGTCTCCCAACTTATTCTCCTGTCTCCCAACTTATTGTACGTGTGccccgcgtgcggcgccgcgctgcgccgCAGGGACCTCTACGTCGCGCACATAGcACAACACGCGAAAGAAAATTCAACCCAAGAAAAGAGCAAACTACACGAATGCAGCGTCtgtcataaaaaatacagttccaAAACACTTCTAGTGGAGCATATGAATCTACACAACGGACAACGTCCGTACACCTGTCACATTTGCCACAAGAGCTTCGCGTCGAAGTACACACACCAGTCGCACCTTAAGACACATCTGGACCGCCCGCGGCCCTTCAAGTGCGCGGACTGCGGCAAGTGCTTCTTCACGCTGCAGAACCTCAACCAGCACCACAAGACGCACTCCGGGCTCAAGGAGTTCGAGTGCAACGTGTGCGGGAAAGCATTCGGAACTCAACATAACCTGGAAATGCACGGTGTAGTGCATTCCGGGCAAAAGCCTTTCGTGTGTGGAGTCTGCGGCAAAGCCTTCGCCCGGCGCGCCGAAGTCAAAGACCACATGCGGATACACACagGCGAGCGGCCGTTCGCGTGCGACGTGTGCGGCGCGACGTTCTCGCAGCGCTCCAACCTGCACTCGCACAAGCGCGCCACGCACTACGACGACAAGCGCTACAAGTGCGACCAGTGCCCCAAGCGGTTCAAGCGGCGAAGattATTAGACTACCACATAAAGGCGTCCCACACCGGCGAGCGGCCGCTGAAGTGCGAAGTGTGCAAAGCTACGTTCGTGTACCCCGAACATTACAAGAAACACATCAGGATACACAGCGGAGAGAAACCTTATGTTTGTGAGGTATGCGGCAAATCGTTCAACTCGCGCGATAATCGCAACACGCATCGCTTCGTCCACAGCGATAAGAAACCTTACGAGTGTCTAGTCTGTGGCGCGGGCTACATGAGGAAACAGCTGCTGTACACGCATATGAACACGAGCGGTCACTTGGCAGAGTCGATAGTGGTGAACCAGCCCCGCGTCACCATACAGAGGGTGACCAACAGCGCGCCGGGAGATAATGTTTACGAGTCTACGGAGGAGTTAGAATTAGAAAACGAGGGAACAAAGGCTGGTGACGGGCAAGGCGCGGTGTACATAGGCGATAAGAAATACATCCTGCAAGAGGGCAAAACTTCACTTAACCTAGTGCAGGATACGGAAGATATTTTAACTTaTAATTTGGAAGGAGCATTGAAGTCTGAAACGAATTTATTAGAGGGCGTCACCATTGAACAACTCGGAGAAGAGACGCAGATGGTGGACGAAAGCGGCGGAATTGTTCGCGTCGTGCAGATAACATTACCTGACGGTAATAACGGATGGGTCGCCATCAACCCCTGA
- Protein Sequence
- MLAGERTGRFAGDAEFIMRHMRAAHDARVYVCPACGAALRRRDLYVAHIAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLIVRVPRVRRRAAPQGPLRRAHRSVAPVSQLILLSPNLLYVCPACGAALRRRDLYVAHIAQHAKENSTQEKSKLHECSVCHKKYSSKTLLVEHMNLHNGQRPYTCHICHKSFASKYTHQSHLKTHLDRPRPFKCADCGKCFFTLQNLNQHHKTHSGLKEFECNVCGKAFGTQHNLEMHGVVHSGQKPFVCGVCGKAFARRAEVKDHMRIHTGERPFACDVCGATFSQRSNLHSHKRATHYDDKRYKCDQCPKRFKRRRLLDYHIKASHTGERPLKCEVCKATFVYPEHYKKHIRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDKKPYECLVCGAGYMRKQLLYTHMNTSGHLAESIVVNQPRVTIQRVTNSAPGDNVYESTEELELENEGTKAGDGQGAVYIGDKKYILQEGKTSLNLVQDTEDILTYNLEGALKSETNLLEGVTIEQLGEETQMVDESGGIVRVVQITLPDGNNGWVAINP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -