Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990109.1:19889475-19897991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00017 0.019 16.7 4.6 1 23 131 153 131 153 0.99

2 13 0.0057 0.64 11.9 6.6 1 23 158 180 158 180 0.97

3 13 0.73 82 5.3 0.7 1 23 181 203 181 203 0.95

4 13 1.2e-05 0.0014 20.3 1.0 1 23 217 239 217 239 0.99

5 13 2.3e-05 0.0025 19.5 0.9 1 23 251 273 251 273 0.98

6 13 2.5e-06 0.00028 22.5 2.7 1 23 279 301 279 301 0.99

7 13 1e-05 0.0012 20.5 3.8 2 23 308 329 308 329 0.98

8 13 8.5e-08 9.5e-06 27.1 0.7 1 23 335 357 335 357 0.96

9 13 0.0015 0.17 13.8 1.9 1 23 363 385 363 385 0.95

10 13 3.7e-06 0.00041 22.0 0.3 1 23 391 413 391 413 0.98

11 13 0.017 1.9 10.5 5.4 1 23 419 441 419 441 0.97

12 13 2.8e-07 3.1e-05 25.5 2.6 1 23 447 469 447 469 0.99

13 13 0.00041 0.046 15.5 1.2 1 22 475 496 475 497 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00017	0.019	16.7	4.6	1	23	131	153	131	153	0.99
2	13	0.0057	0.64	11.9	6.6	1	23	158	180	158	180	0.97
3	13	0.73	82	5.3	0.7	1	23	181	203	181	203	0.95
4	13	1.2e-05	0.0014	20.3	1.0	1	23	217	239	217	239	0.99
5	13	2.3e-05	0.0025	19.5	0.9	1	23	251	273	251	273	0.98
6	13	2.5e-06	0.00028	22.5	2.7	1	23	279	301	279	301	0.99
7	13	1e-05	0.0012	20.5	3.8	2	23	308	329	308	329	0.98
8	13	8.5e-08	9.5e-06	27.1	0.7	1	23	335	357	335	357	0.96
9	13	0.0015	0.17	13.8	1.9	1	23	363	385	363	385	0.95
10	13	3.7e-06	0.00041	22.0	0.3	1	23	391	413	391	413	0.98
11	13	0.017	1.9	10.5	5.4	1	23	419	441	419	441	0.97
12	13	2.8e-07	3.1e-05	25.5	2.6	1	23	447	469	447	469	0.99
13	13	0.00041	0.046	15.5	1.2	1	22	475	496	475	497	0.92

Sequence Information

Coding Sequence: ATGCTTAATGTAGAGACAACTTGTCGGACGTGTACGAGAAACTGTGAAGTATTGATGGACCCCTATGAGCCTTGGATCACAGAAAGTGAGAAATGTGTTCCGCTGTTAGAAATTTTGGAGGCATGCACGGCTACGCAGGTATCCAAAGAGGATGGATTTCCTCAGAAATTATGCAAAGAATGCGTCAAAGCCCTTGAGTTTATTTACACGTTCCGCACTCAAGTGCTTAGTTCCTATGAGaagtttaagaaaataaatgaagCTCAGACAAAtgttaaaaatgaattaattgaAGTTGAACTTAAGACTGAAAGCCAATTCGATTATGATTTTTGTTACGATGATTTCTTACTCGACGATTTTACCAAGCAAGAGCTTGAAGATAAAGGCTATGTGTGCAACGAGTGTAACAAACACTATACAAATGAGAAAAAGTTTTTGaatcatttaaaaacacatagTGATGCTAAATATTGCTGTCTGGTTTGTAGTAAAAGTTTCCACAAGCAGTCAAGCCTTGACCGCCACCTAACGAAGCACTACAAATGTATTGTATGCCTAAATCACTTTGAATCGGAAACGGCACTATTAGAACATATGAATCAGCATGTAGTTGTTGAAATTAAGACTGAACCGGAGGATACTCTGTACAAATGCTCTGAATGTGATGTAGTGTATACTAAGAATAGATCTTTAGCaatgcatatgaagaagcacaGGCAAAAAGGGGAAACGGTTAAAAAGAAGTCGTACCGCTGTGATGTTTGTGAGAAAGAGTTTGGTTTGAAGACATTGCTACGCCGGCACATGAAGCTGCACAGTGATGAACGTCCATATCAGTGCCTGAAGTGTAACAAGAGTTACTCGAGACAAGATCAGTATATGGAACATATGAATAGGCACAACGGGATCAAACCTAATGTTTGTCCTCATTGCAGTAAAGCATTCACCCAGCTGTGCAGTTTAAAGGACCACATCCGCACACACACCGGGGAGACCCCATACCTGTGCTCGGAGTGCGGGAAGGGCTTCAACAACAGCTCAAATCTGCGTCAGCACATGATAAGACATACGGGGTTGAAACCGTTTGCTTGTAACTTGTGTCCAAAGAGGTTCTCTACTAAAGGTCAAATGACTTGTCATATCGGCACCCACACGGGTGTGCATCCGTATAAGTGTGACGAGTGCGGTGCCGCCTTCACCAAGCCCAACTCGCTTAAGAAGCACAAGCTCATCCACCTGGGCATCAAGCCCTTCGCCTGCGACACCTGCGCCATGCGTTTCTCGTGCAAGGACCACTTGAAGCGCCACTACCGCATCCACACCGGCGAGAAGCCCTACCGCTGCCAGCATTGCGAACGCGCCTTCACGCAGAGCAATGACCTCGCCAAACACATGAGAATGCATGTGGGACAGAACATCTACCAATGCACTCAATGCGACATGCGCTTCCGTCTACTAAGCGAGCTGAAACAACACTACCCTACCCACTACATAGGCGACGGAGAGGCGTCTCTCATTCCCGTGACCAAGGAGGAGTCCGCCCCCGCGCCCCTGCAGGAGACCAAGGAGACCGAGGGCACTATCACCATCACTTTCAGCAGCAACGGGATGGACAAGGACGGGTTACATGGAAACATCACTATTGACATCACACCGCAGAATACATAG
Protein Sequence: MLNVETTCRTCTRNCEVLMDPYEPWITESEKCVPLLEILEACTATQVSKEDGFPQKLCKECVKALEFIYTFRTQVLSSYEKFKKINEAQTNVKNELIEVELKTESQFDYDFCYDDFLLDDFTKQELEDKGYVCNECNKHYTNEKKFLNHLKTHSDAKYCCLVCSKSFHKQSSLDRHLTKHYKCIVCLNHFESETALLEHMNQHVVVEIKTEPEDTLYKCSECDVVYTKNRSLAMHMKKHRQKGETVKKKSYRCDVCEKEFGLKTLLRRHMKLHSDERPYQCLKCNKSYSRQDQYMEHMNRHNGIKPNVCPHCSKAFTQLCSLKDHIRTHTGETPYLCSECGKGFNNSSNLRQHMIRHTGLKPFACNLCPKRFSTKGQMTCHIGTHTGVHPYKCDECGAAFTKPNSLKKHKLIHLGIKPFACDTCAMRFSCKDHLKRHYRIHTGEKPYRCQHCERAFTQSNDLAKHMRMHVGQNIYQCTQCDMRFRLLSELKQHYPTHYIGDGEASLIPVTKEESAPAPLQETKETEGTITITFSSNGMDKDGLHGNITIDITPQNT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654518;
90% Identity: -
80% Identity: -