Hsal031998.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990110.1:18966009-18979116[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0087 0.97 11.4 5.4 1 23 365 387 365 387 0.98 2 22 0.22 24 7.0 0.2 2 23 395 417 395 417 0.93 3 22 0.055 6.1 8.8 0.4 1 23 421 443 421 443 0.92 4 22 0.69 78 5.4 0.1 1 23 448 471 448 471 0.95 5 22 0.0039 0.43 12.5 2.2 3 23 476 497 475 497 0.96 6 22 0.0067 0.75 11.7 0.1 5 23 505 524 504 524 0.96 7 22 0.0067 0.75 11.7 0.1 5 23 532 551 531 551 0.96 8 22 0.0067 0.75 11.7 0.1 5 23 559 578 558 578 0.96 9 22 0.0067 0.75 11.7 0.1 5 23 586 605 585 605 0.96 10 22 0.0067 0.75 11.7 0.1 5 23 613 632 612 632 0.96 11 22 0.21 23 7.0 0.1 5 23 640 659 639 659 0.96 12 22 0.0067 0.75 11.7 0.1 5 23 667 686 666 686 0.96 13 22 0.0067 0.75 11.7 0.1 5 23 694 713 693 713 0.96 14 22 0.0067 0.75 11.7 0.1 5 23 721 740 720 740 0.96 15 22 0.0067 0.75 11.7 0.1 5 23 748 767 747 767 0.96 16 22 0.0067 0.75 11.7 0.1 5 23 775 794 774 794 0.96 17 22 0.035 3.9 9.5 0.4 1 22 833 854 833 858 0.93 18 22 0.0056 0.63 12.0 0.1 2 23 877 899 877 899 0.94 19 22 1.6 1.8e+02 4.2 0.4 2 23 918 940 917 940 0.95 20 22 0.0069 0.77 11.7 1.7 2 23 954 975 954 975 0.96 21 22 0.0058 0.65 11.9 0.0 3 23 982 1002 981 1002 0.95 22 22 0.001 0.11 14.3 0.4 1 21 1008 1028 1008 1029 0.94
Sequence Information
- Coding Sequence
- ATGAAGCCACTCGGCGCGCAACCGAGCCTGGCTGCTGGATTATGGCGGGAGTTCTGGGCGGTAAAAGAGGCctttccatcaAATACAGACATGCGGCAAAAGTGGTTGAGAGCTATTGGGCGACCAGACTGGAGCCCTCCTGGATACTCTCGTGTGTGCAGTGCTCACTTTAGCTATGAGCAGATAAACCATGATGGGCAGAGGATAAGGATTAAGGATGATGCAGTCCCAGTCAAGGATTTGCCAGCCAACTCCAACTTTGAGGCTTCAGAAGTGGAGGCATGCAGGTTCTGCCTGGCCGCAGAGGTGAGACTGTACAGCCTACAGGATGGAGTGCATAAGGTGTACCTGGAGTCCATAGTGGGATATAATaaaaattacaatatagaAGGACTTCCACAGTTTATCTGCTATGAGTGCGCAGCTCATCTCAAGAAATGCTATAATCTATTCGAAAAGAGTTTGACTGTACAAGCGACTTTACTTGATATATTTGCACAATGTGGAAAGATAACAACAAATCTTATTAACACAAAGAATCGGACGGAACTGAATTTGTCATCACCATTATCCGTACACGTAATTAAAACGAATTATGAATTCAAATACAATAACTTGGAAGATCATGAAGTTCATATGAACACAATTGAAGATAATATGAAAACTGTAGATAGCACTGATTACATTAGCAATATTAGCGTACCCAAATTAGAAGTTATGACTATAGGAATGCATTCTGAAGATACAAAAGAAGATATTATTAATACTGAAAAGTGTGTAGCAATGGATTTCAACACTGATGAAGACAAAAACTTCATAATAGATGATAGATCAGATGTGTTTGATGATGATTTAAATAATTCTTCAGATTTGAGTTCAGATGACGAAGTAAAACTTGAAATAGAGAACGTATTAGTTGATGACGAAACCAAACTAAAGAAACAGAGAAAATCTGCCAAGTCTAATCAGAAGGGGTTAACACCAGATGAAGTCAACATGCagaagtattataatattgttcaATTAACAttaGATCAACAAAAAGAAGAAAGGAGCAAAACCAAAGAGAAGAAACAATTTGGTGGAGAATCATTCACCTGTCAGATATGCTCAAAAGTGTTTGCGCATCACAACACTTATCAACTGCATACACAGAATCACGAGCCTAGTCGAGGGTGCGCGGAATGCCCTGTGTGCAAGCTGCGTTTCAAGAACGATGTTCTGGCGCGGTCTCACGCCAACCGCGCTCATGCCAAGAAATTCTTCTGCAAGTTGTGTCCGAAGGCTTTCAATAATGTCGGCGTAGCGAAGAAGCACTACTTGTGGCACTCGGGGCACGTGTACCGGTGCGGGCGCTGCGCGTTCAGCTCCGCGCACGCGTCGGCGCTCGGTGCGCATGCGCGCGCGGCGCACGGCGGCGAACACTGCGCGCGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCGTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATGTGAGTGGTCTCAGTCTCGGGGCGGCTGCGGCCGCGCCTTCGTCAGCCACAGGGGGCTGCTGCTGCACCAGCGCACCGTGCACAAGCACGCTGATTCCGAAGTATCGGTGTCAGCAGTGTGACCTCAACTTTAACTCGGAGGGCGCGAGAAGAGTCCACATACTAACCTCTAagcaacacaaaaaaaagacaacCTTATGtgaTACAACACCGCAAGACCCGAGCCTCAAGAACACTTGTAACAAATGCGGCGTAGAGTTCCCGACCCTCAAGCAATTGGTAGAGCACGGTAGAGCGGAGCACAGGCGGCCGAGGCAGAAGACTAGCTGGCGGCTGCCCGGCGACTCGTACCCGACGGAGTGCGCCCATTGTGGGGTCGTCGTGGGGAGCCGCGGGGAGCACTGGCGCCACGTGCGTCGCGCGCACCCCGCGCAGCGCGCCTCCTACCGCGCCGTCGTCACCGCCGTCTGCGACACTTGCGGGAAGGGCTTCCAGAACTCCACGAAGCTGCACCTGCACGAGCTGCGGCACGGCGCGCCGTCGGTGGCGTGCGGGTCGTGCACGCGCGTGTTCTACGACAAGTACGCGCTGGCGCGTCACGCCGCCGTGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCGGACTCGCCTTCAAGCAGCGCGGCAACCTCGACCGGCACTCCCGGGTACGTAGCTAA
- Protein Sequence
- MKPLGAQPSLAAGLWREFWAVKEAFPSNTDMRQKWLRAIGRPDWSPPGYSRVCSAHFSYEQINHDGQRIRIKDDAVPVKDLPANSNFEASEVEACRFCLAAEVRLYSLQDGVHKVYLESIVGYNKNYNIEGLPQFICYECAAHLKKCYNLFEKSLTVQATLLDIFAQCGKITTNLINTKNRTELNLSSPLSVHVIKTNYEFKYNNLEDHEVHMNTIEDNMKTVDSTDYISNISVPKLEVMTIGMHSEDTKEDIINTEKCVAMDFNTDEDKNFIIDDRSDVFDDDLNNSSDLSSDDEVKLEIENVLVDDETKLKKQRKSAKSNQKGLTPDEVNMQKYYNIVQLTLDQQKEERSKTKEKKQFGGESFTCQICSKVFAHHNTYQLHTQNHEPSRGCAECPVCKLRFKNDVLARSHANRAHAKKFFCKLCPKAFNNVGVAKKHYLWHSGHVYRCGRCAFSSAHASALGAHARAAHGGEHCARCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAVVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADSRGGCGRAFVSHRGLLLHQRTVHKHADVSGLSLGAAAAAPSSATGGCCCTSAPCTSTLIPKYRCQQCDLNFNSEGARRVHILTSKQHKKKTTLCDTTPQDPSLKNTCNKCGVEFPTLKQLVEHGRAEHRRPRQKTSWRLPGDSYPTECAHCGVVVGSRGEHWRHVRRAHPAQRASYRAVVTAVCDTCGKGFQNSTKLHLHELRHGAPSVACGSCTRVFYDKYALARHAAVHAPARPHRCARCGLAFKQRGNLDRHSRVRS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772959;
- 90% Identity
- iTF_00772959;
- 80% Identity
- iTF_00772959;