Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990097.1:45199316-45204028[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.26 29 6.7 0.2 6 23 161 179 160 179 0.91

2 13 0.00045 0.05 15.4 2.1 1 23 192 214 192 214 0.97

3 13 0.0027 0.31 12.9 3.3 1 23 258 280 258 280 0.97

4 13 1.2e-05 0.0014 20.3 0.8 1 23 286 308 286 308 0.98

5 13 2.3e-07 2.5e-05 25.8 2.0 1 23 314 336 314 336 0.99

6 13 0.0011 0.13 14.1 7.8 1 23 342 364 342 364 0.98

7 13 5.1e-06 0.00057 21.5 2.7 3 23 372 392 370 392 0.97

8 13 5.8e-05 0.0066 18.2 2.3 1 23 396 418 396 418 0.96

9 13 7.7e-05 0.0086 17.8 3.3 1 23 424 446 424 446 0.97

10 13 2.8e-06 0.00031 22.3 5.1 1 23 452 474 452 474 0.98

11 13 2e-05 0.0022 19.7 2.7 2 23 482 503 481 503 0.97

12 13 7.8e-05 0.0088 17.8 2.4 1 23 509 532 509 532 0.95

13 13 3e-07 3.4e-05 25.4 1.1 1 23 538 560 538 560 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.26	29	6.7	0.2	6	23	161	179	160	179	0.91
2	13	0.00045	0.05	15.4	2.1	1	23	192	214	192	214	0.97
3	13	0.0027	0.31	12.9	3.3	1	23	258	280	258	280	0.97
4	13	1.2e-05	0.0014	20.3	0.8	1	23	286	308	286	308	0.98
5	13	2.3e-07	2.5e-05	25.8	2.0	1	23	314	336	314	336	0.99
6	13	0.0011	0.13	14.1	7.8	1	23	342	364	342	364	0.98
7	13	5.1e-06	0.00057	21.5	2.7	3	23	372	392	370	392	0.97
8	13	5.8e-05	0.0066	18.2	2.3	1	23	396	418	396	418	0.96
9	13	7.7e-05	0.0086	17.8	3.3	1	23	424	446	424	446	0.97
10	13	2.8e-06	0.00031	22.3	5.1	1	23	452	474	452	474	0.98
11	13	2e-05	0.0022	19.7	2.7	2	23	482	503	481	503	0.97
12	13	7.8e-05	0.0088	17.8	2.4	1	23	509	532	509	532	0.95
13	13	3e-07	3.4e-05	25.4	1.1	1	23	538	560	538	560	0.99

Sequence Information

Coding Sequence: ATGATGGAGACTGTAAAAccatgttgttgttgttgctgtcAACTTCGGTCTCCGTTAAAAGATTTGAATACGCCATATAGCCGTCTTGGCATAACGGAGATATACTCGCAAATGTTTGAAGATTGTTTCAAGATTCAACTAGCACTGGACAGCAATGTGTATGGGATCTGTGAGGTGTGTGTCGGGCGCCTTCAGGATGCGAGTGACTTCAAGCTGCAAGCTCAACGCAGCCAGGAGGAGCTGCGGGCGCAGCTGGCGAGACCACCGCAAGGCAAAGATCTGGAGCCAGCTATCAAGACTGAACCGATAGATAACGACGCGATGGGCGATACTGCGCTCACGccatCAACGTCTAACTTTGAAGTACCGCCGAGCCTGAAACTAGATTGGTCCGTGCCCGTCTGCGGTTGGGTACAGACGGGATACCTACCTTCCGTGAAGCTCGAGCGCCCGGACACGTCGCCGCACGCGTACCTGTCATGCCCCGCGACGATTGACCATAAATCGAGTCTGGCGACGCACATGAGAGAGATGCACGATGACACCTTTGGGGTTCGCATCGAGGAAGCAGCGTACACATGCGACACTTGCGGAGAACAGTTCACAATGAAGCTTAGTCTAACCCAGCACATACACCAACACATGATGGATTCTTCTTACCCCAACAGTATTCACACGGGAGTAAATCTTCTCAGCTGCGAAATTAGTCCCACACAGTTCACTAACAGCCGGAACTTAGAACATAAACGGAGTCATTCGGGAGAGAAAGCCCACATATGTGAAATATGTCACAAACAGTTTGGccgaaaaagtattttaaacgaACACAAGAGAATACATACGGGAGAAAAACCTTACAGTTGCGAAGTTTGTAACAAGCGGTTCTCGCAAAACGGCATTTTAAAGAAGCACATGAGTGTACACACGGGACAGAAGCCGTACAAATGTAAAATATGCGACAAACAATTCAGGTTAAAAGAATCGCTTAAAGCGCACATGAAAATGCATGAAGGGCAGAAATCTTTCTGTTGTAAAACTTGTCACAAGCAATTCATAACGAAACGCCAACTAGAAGAGCATAGCAGAACCCATACGGGACAGAAACCGTACggctgtgaaatatgtaaaaagCAATACACAACTCAACATAATTTGAACCAACACATGAGATTACACACAGGATGCTTTAGTTGTGAGACTTGTAACAAACGTTTTCCAACGAAATCCAAACTGAGATTGCACAACCTGTCTCATACAGGAGAGAAACAGCACACCTGTGAAACTTGTAATAAGCAGTTCATAACAAAATACCTCCTGAAAGTTCACAACAGAGTCCACACAGGAGAGTATCCTTTCAGTTGTGATATTTGTAAGAAGCGATTCACACAAAAACACTACTTGAAAAACCACATGGTGACACATGAAACGGTAAGGAAATCCGTCAGCTGTGAGCTGTGTAACAAGCAATTTACATCAAAATGCAGTCTGAAAGTGCACATGATAACTCACACAGGAGAAAAATCTCATCGGTGTGAAATATGCAACAAGCGATTCGCGCTGAAAACTACCTTGACGAGACACACGAAGGCAATACATAACAAGGCACCGCAGTACAGCTGTGTGATATGTGAAAAGGAGTTCACTGATAAAGACTTCTTGAAGAGACACATCAGAACACATACCAACTGTGAAACGTGTCACACAAGTAATCCGCAGCAAGCTTCCTCTTAA
Protein Sequence: MMETVKPCCCCCCQLRSPLKDLNTPYSRLGITEIYSQMFEDCFKIQLALDSNVYGICEVCVGRLQDASDFKLQAQRSQEELRAQLARPPQGKDLEPAIKTEPIDNDAMGDTALTPSTSNFEVPPSLKLDWSVPVCGWVQTGYLPSVKLERPDTSPHAYLSCPATIDHKSSLATHMREMHDDTFGVRIEEAAYTCDTCGEQFTMKLSLTQHIHQHMMDSSYPNSIHTGVNLLSCEISPTQFTNSRNLEHKRSHSGEKAHICEICHKQFGRKSILNEHKRIHTGEKPYSCEVCNKRFSQNGILKKHMSVHTGQKPYKCKICDKQFRLKESLKAHMKMHEGQKSFCCKTCHKQFITKRQLEEHSRTHTGQKPYGCEICKKQYTTQHNLNQHMRLHTGCFSCETCNKRFPTKSKLRLHNLSHTGEKQHTCETCNKQFITKYLLKVHNRVHTGEYPFSCDICKKRFTQKHYLKNHMVTHETVRKSVSCELCNKQFTSKCSLKVHMITHTGEKSHRCEICNKRFALKTTLTRHTKAIHNKAPQYSCVICEKEFTDKDFLKRHIRTHTNCETCHTSNPQQASS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -