Hsal011325.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990097.1:49147683-49158899[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1 1.2e+02 4.8 2.3 2 23 55 76 54 77 0.92 2 21 1.4 1.6e+02 4.4 0.2 2 23 100 121 100 121 0.94 3 21 0.00056 0.063 15.1 1.1 1 23 143 165 143 165 0.96 4 21 0.17 19 7.3 0.8 1 21 169 189 169 190 0.90 5 21 0.36 40 6.3 0.1 2 23 243 265 242 265 0.93 6 21 9.8e-05 0.011 17.5 0.5 1 23 287 309 287 309 0.98 7 21 0.0016 0.18 13.7 0.2 1 23 313 335 313 335 0.95 8 21 0.056 6.3 8.8 0.1 1 23 340 363 340 363 0.89 9 21 0.0035 0.39 12.6 4.4 1 23 369 392 369 392 0.95 10 21 5.5e-05 0.0061 18.3 0.2 1 23 399 422 399 422 0.98 11 21 1.8e-05 0.002 19.8 1.5 1 23 428 450 428 450 0.97 12 21 0.19 21 7.1 1.4 1 23 494 516 494 516 0.90 13 21 0.01 1.1 11.1 0.2 2 23 544 566 543 566 0.92 14 21 7.2e-05 0.0081 17.9 4.3 2 23 590 611 589 611 0.97 15 21 0.046 5.1 9.1 0.3 2 23 615 636 614 636 0.96 16 21 0.0086 0.96 11.4 5.3 1 23 641 664 641 664 0.95 17 21 3.1 3.4e+02 3.3 2.6 2 23 676 698 675 698 0.90 18 21 0.0011 0.12 14.2 0.3 1 23 704 727 704 727 0.96 19 21 4.6e-07 5.1e-05 24.8 2.0 2 23 732 753 731 753 0.97 20 21 0.00018 0.021 16.6 3.0 1 23 759 781 759 781 0.97 21 21 0.0008 0.089 14.6 2.6 1 23 787 810 787 810 0.97
Sequence Information
- Coding Sequence
- atggcatacagtgcttgtctacgATGGAGAAGTGAAGAAGCCATTCAGGCTGGTAAGGCATTGAGCGAAGCTGAAAGATGGCGTACCAGCCTAAGAAATAACATTTCTGCTATCATATCCATAACCACGGTTTACCCGTTCAAGTATAAAAGAGGGAATTTTCTCTGTTTCTTCTGCAAAGATACATTTCCAGAGGCAGAGAAGCTTCGTCAACACAATCGTATCCATCATTCTGAAGTGATGGAAATGCCTAAACCTAAAAAATACGACCCGACCAAAATTGATCTTGTAGACGCTACATGTAAGATATGCTTGGCTGAAATTAACGATTATGACACACTAAAAACCCATTTGACTGAGCATGGTAAAAAGCTGGATATGGCCCAGGGCGAAACTGTGCTTCCTTTCCGCTTACTCGACAGCAAACATGTTTGTCAGTTTTGCGGGAAGACTTACGACAACATTATTAGTTTATTCAAGCACATCAACGGACACTCTAATCATCACATTTGCGACAAATGTGGGAATAGATTTACAAGTTTTTTCCAGAAGGCTAACCATATACTTATGAAAAAATGCGGAACATCTCCCAAAATGGATCCCGGTGAGACGGGTAACAGTATCGCAGAGCAAGCACCGAAGGTCAAAGCGAACGATGACCGAAACAAGAAAGAACGAAGACTCCTTATTAAGTATGAACTTCCTAAAGTAGACGTCACTAACACTGAATGTGCTATATGCGATGAAGTCCAGGCTGATTTACATGATTTGAAACAGCATCTCTTAGAAGAACATAACAAAAACCTTGACCCAAAATCTAATGATGGTATACTTCCGTTCAAAGTCACCAAGGACGAGTTCAAATGCGCGATTTGCAGTGAAACATTTGCAGAGTTTAAAAGTTTAAACCAACATATGAACGTGCACTATCAGAATTTTATTTGTGAGCAGTGCGGAACGGGGTTTATTACCCCGGAGCGTTTGAGAACGCACGCATTTTCACATGAGACTGGTTCTTTTCCTTGCGACGCTTGTGAAAAAGTTTTTCGATCCTCAAATGCCAAGAACGAACATTACGCTCTCGTTCACATGCGTGTTAAGAGACACCGGTGTCCCCATTGTCCCGAGACATTTAGAAATTACTTCCAAAGAAACAAACACGTGTCGTCTGTCCACGGTCTCAAACTAAAAGAATTCAAGTGCAATTTGTGTCCTAAAGTGTTCACATTAAGTGGGAAATTAGGTGTTCATGTTAGGACAGTCCATTTAAAACTCAAGAGGCATTCGTGTGAAGTATGCGAATGGAAGTTTTACTCTAAATCTGAGTTAAAGGAGCACATGATCCGTCACGGATTACCGGCAAGACAACGACCAGGCCCCAGGACGAGTATTTGGCAAATGACCATATCAGAACGGCAGAACGCCGCCACATTTTTAGAGTTCACTACTATCAAGCCCTTCTTTTACCAGCAAGCTAATTTCAAATGCTTCTACTGTAACGAAGTCTTTCCTGAGATCCACTCCGTCTTACAACACACTGCATTCCACGTGACGCCCGAAAGGTGTTGCCTACTCAAACAGTATTTACGAAAAGGAAAAAGGGTTATAAAGGTCGATATATCAGCTCTCAAATGCAAGCTATGTGAGCAAAAATACTCGGACTTGGACGATATAAGAAAACATTTGATTGCGGCACACAAAAAGGAATTTAATACAGCAGGCAACGGCCTTATGGCCTATGATCTAAGCACAAATAACGGCTTACTTTCCTGTCACAAGTGCTCTAAAACGTTCAATTCTTTCTTCCTACTCAACAGGCATATGAATGTCCATTTCAGTGTCGTCTGCGAAACTTGCGGCCTGGGTTTCATGTCTCACCAACGCCTAATAAACCATAGGATAGTCCATCAAAACGGTGTACACAAGTGCGATAAATGTCAAGAAGTATTcacaactaaattaaaattaagatatcacttatttaaaaaacacgaGGTCACGAATTCGAAGAAGATAAAACCACTAAAATGCCCTCATTGCTTAGAAAGGTTCGCTGAGCATTATCGTAAAATGACGCATCTTAAGGAAGCGCATGGTATCACGTTCACCTTTGAATGCCAGGTTTGCAAGGCTGTATTCCCAACAAGACGAGCTTTAACTGAACACACAACCAAACTGCATACGCAAAGGATTCAATGCAAGATATGCGGGAAATGCTTTGGTACTCGATCGTTACTGAAGATGCATATGAGAGGTCATACGGGCGAGAGGAATTTCTTCTGTTCAATATGCCAAAAAGCTTACATGCACGAGAGGACGCTACGGCAGCACATGAGGGTTCACGGACCTGTGTGGAAGTTTACGTGCTCAGAGTGTGGCAGCGGCTTTCACAACAGAAACGATTATAATAAACATATGAAACAGTGGCATCCTCAGTGGCAATTTAAGACTATTGTtaaaaattttggaaatgaacTCATTAACTGA
- Protein Sequence
- MAYSACLRWRSEEAIQAGKALSEAERWRTSLRNNISAIISITTVYPFKYKRGNFLCFFCKDTFPEAEKLRQHNRIHHSEVMEMPKPKKYDPTKIDLVDATCKICLAEINDYDTLKTHLTEHGKKLDMAQGETVLPFRLLDSKHVCQFCGKTYDNIISLFKHINGHSNHHICDKCGNRFTSFFQKANHILMKKCGTSPKMDPGETGNSIAEQAPKVKANDDRNKKERRLLIKYELPKVDVTNTECAICDEVQADLHDLKQHLLEEHNKNLDPKSNDGILPFKVTKDEFKCAICSETFAEFKSLNQHMNVHYQNFICEQCGTGFITPERLRTHAFSHETGSFPCDACEKVFRSSNAKNEHYALVHMRVKRHRCPHCPETFRNYFQRNKHVSSVHGLKLKEFKCNLCPKVFTLSGKLGVHVRTVHLKLKRHSCEVCEWKFYSKSELKEHMIRHGLPARQRPGPRTSIWQMTISERQNAATFLEFTTIKPFFYQQANFKCFYCNEVFPEIHSVLQHTAFHVTPERCCLLKQYLRKGKRVIKVDISALKCKLCEQKYSDLDDIRKHLIAAHKKEFNTAGNGLMAYDLSTNNGLLSCHKCSKTFNSFFLLNRHMNVHFSVVCETCGLGFMSHQRLINHRIVHQNGVHKCDKCQEVFTTKLKLRYHLFKKHEVTNSKKIKPLKCPHCLERFAEHYRKMTHLKEAHGITFTFECQVCKAVFPTRRALTEHTTKLHTQRIQCKICGKCFGTRSLLKMHMRGHTGERNFFCSICQKAYMHERTLRQHMRVHGPVWKFTCSECGSGFHNRNDYNKHMKQWHPQWQFKTIVKNFGNELIN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -