Hsal010733.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990097.1:40691219-40698285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.01 1.2 11.1 0.6 1 20 362 381 362 382 0.95 2 16 0.42 47 6.1 0.5 3 23 412 433 410 433 0.93 3 16 5.5 6.2e+02 2.5 3.3 1 23 456 478 456 478 0.95 4 16 0.00085 0.096 14.5 0.6 1 23 482 504 482 504 0.98 5 16 0.1 11 8.0 2.5 1 23 509 532 509 532 0.92 6 16 0.016 1.8 10.5 0.4 2 23 540 562 539 562 0.95 7 16 0.00034 0.038 15.8 3.4 1 23 569 592 569 592 0.96 8 16 0.013 1.5 10.8 3.6 1 23 598 620 598 620 0.98 9 16 0.34 38 6.4 0.4 9 23 633 647 632 647 0.96 10 16 8.6e-07 9.6e-05 24.0 1.3 1 23 658 680 658 680 0.98 11 16 9.6e-07 0.00011 23.8 2.4 2 23 710 731 710 731 0.98 12 16 7.2e-07 8.1e-05 24.2 2.0 1 23 736 758 736 758 0.98 13 16 9.6e-07 0.00011 23.8 2.4 2 23 788 809 788 809 0.98 14 16 7.2e-07 8.1e-05 24.2 2.0 1 23 814 836 814 836 0.98 15 16 2.6e-06 0.0003 22.4 1.6 2 23 866 887 866 887 0.98 16 16 2.2e-06 0.00025 22.7 1.9 1 23 892 914 892 914 0.98
Sequence Information
- Coding Sequence
- ATGGAGGGAAGCGGATGCAGCTGCACGTTCTCGGACGAAGTCCGCGTGAAACGGGAACCTGATTCTGTGTTTAACGAACATATACAAGGTAATGATGAAGAGGAATTTACGAAACTTGTCAAGCAGGAAGTTGTGTATACCAAAGTGGAGGTGGAATGGCAAGATGGTGCGGGCTTCCATGATGTGGGTAGTGCCCCTCTAGACAATCTATATACTGGACATGAGGTGAAGGATGAACTAGTGCTGGGGCCAGAGGGCCTTCAGCCCCTTGCTATAGCCTTTACGCTTCAGGCGCAGGCTTCAGATGTCAAAGAACAGCCCGCGCTGAGGGACTGTGTGGTGAAGCTTGAGCGCATCCAACACCTTGAAGCGCTGCTCAGCACCAACACATGCCGGAGTAAGGATTGGACAGCAAGCCTAAAGAAAGTTATGAAACATGTTCAATATACTACAGAGCAAGAAGAGAGCGGGCGAAGTGACACCGATAACAGCGATACCGGTGAGGGGATTgTACAAGGTAATGATGAAGAGGAATTTACGAAACTTGTCAAGCAGGAAGTTGTTTATACCAAAGTGGAGGTGGAGTGGCAAGATGGTGCGGGCTTCCATGATGTGGGTAGTGCCCCTCTAGACAATCTATATACTGGACATGAGGTGAAGGATGAACTAGTGCTGGGGCCAGAGGGCCTTCAGCCCCTTGCCATAGCCTTTACGCTTCAGGCGCAGGCTTCAGATGTCAAAGAACAGCCCGCGCTGAGGGACTGTGTGGTGAAGCTTGAGCGCATCCAACACCTTGAAGCGCTGCTCAGCACCAACACATGCCGGAGTAAGGATTGGACAGCAAGCCTAAAGAAAGTTATGAAACATGTTCAATATACTACAGAGCAAGAAGAGAGCGGGCGAAGTGACACCGATAACAGCGATACCGGTGAGGGGATTggatcGGACGACGACGCgcccaagaaaaaaagaaatatagcgGACTCCAGCGCTACCCCCGAGCGCGCAGAGCACAGGGTCAATCTGACCGCCATCCTGCAGTTCTCCAACGCCAGTCCGTTCCGCGACAAGACTGCCCGCGGCTTCTCCTGCCTCTACTGCCGCAAACACTTCCCCAACATCCGCGAGCTCAGAGCCCACACCGCGCCGCAGTCCGAGAAAGACAAACTCAACTCCATGCTCGACTACTCCCTCAGCAATAACCCTATCAAACTGGACATCACCGACCTCGCCTGCACCGTCTGCCACCAGCCCATGACCGATCTCAACCAACTCAAAGACCATCTTGTCTCCTTCCACGATAAGACCATctataaaaacattaaagacATCATCCTCCCCTTCCGTCTCGACGACGGCCATAACTTCACCTGCGTCATCTGTTCCGTCATTCACGTCTCCTTCAAAAACCTCTACCATCACATGAGCAGCCACTACACCAACTACTGCTGCAGTAGCTGCGGCCTCGGATATATCACTATAGCTGCTCTCCGGAAACACATCAAAACCCACGAGCGAGGGAACTTCCCTTGCGCTTACTGTCATAAAAAATACTCCTCCTTAACTAAGAAGAACAATCATGAGAAAGGTGCTCATAAAGACGGTTGGCTGCGGAACAAGTGCCCGCACTGTCCTGAGATATTTGTTAATTACTACGATCGAAGCGAGCACCTAGCAAAAGTTCATAACGAAACCCCTATTCAATATCCGTGCAACGCGTGCAATAAGGTTTACAAAAAGAAATTCGAGCTGAATCGACATATTAAACACCGGCATTTACGGCATAGGAGCTTCTGCTGCGACAAGTGTAGTGCTGAATTCTTCTCCAAACGCGGTCTGGATAGTCATATGAGGAAACACTCCGTTGGAGGAGTGCACAATGACGTATTAGCAAGTACTTTCTCCAAAGCCAGCACTCTGAAAGACCATGTGCGGAAACACGAAACCGGGAAGAAAACGCCCTTATACACATTCGAATGTGAAATCTGCAAAAAGACGTTTGTACAGGAACGTAGTTTAAAAACCCATATGCGTTTACATCTGGACTATTTAAAAGGCGATGGAAAACATCTCAGAGATGAAAGACCCGTTGATCACATGTCGAAGCCTTCTGGAGGAGAGGTGCCAACCTGCAGCATATGTTCAAAAACTTTCACCAGAGCCAGGACTCTGAAAGACCATATGAGAACTCACGATGATAGGAGATTTCAATGTGAGGTGTGCCAAAGGACATTTGTTCAGAAACGTAGCCTCAAGAACCATATGAGGTTACATCTGGACCATTTAAAAGATGATGGGAAACATCTCAGAGATGAAAGACCCGTTGATCACATGTCGAAGCCTTCTGGAGGAGAGGTGCCAACCTGCAGCATATGTTCAAAAACTTTCACCAGAGCCAGGACTCTGAAAGACCATATGAGAACTCACGATGATAGGAGATTTCAATGTGAGGTGTGCCAAAGGACATTTGTTCAGAAACGTAGCCTCAAGAACCATATGAGGTTACATCTGGACCATTTAGAAGATGATGGGAAACATCTCAGAGATGAAAGACCCGTTGATCACATGTCGAAGCCTTCTGGAGGAGAGGTGCCAACCTGCAGCATATGTGCAAAAACTTTCACCAGAGCCAGGACTCTGAAAGACCATATGAGAACTCACGATGATAGGAAATTTCAATGTGAGGTGTGCCAAAGGACATTTGTTCAGAAACGTAGCCTCAGGAACCATATGAGTTCGCATCAGGACTATTTAGAAGACAATGTGAAACATCTCATAGATGACAAGACCTTGAATGTAATAGCCGCTGAGAATGAGAAAGCGGAAGAGGAAATAAGAGAACAGTGTACATAG
- Protein Sequence
- MEGSGCSCTFSDEVRVKREPDSVFNEHIQGNDEEEFTKLVKQEVVYTKVEVEWQDGAGFHDVGSAPLDNLYTGHEVKDELVLGPEGLQPLAIAFTLQAQASDVKEQPALRDCVVKLERIQHLEALLSTNTCRSKDWTASLKKVMKHVQYTTEQEESGRSDTDNSDTGEGIVQGNDEEEFTKLVKQEVVYTKVEVEWQDGAGFHDVGSAPLDNLYTGHEVKDELVLGPEGLQPLAIAFTLQAQASDVKEQPALRDCVVKLERIQHLEALLSTNTCRSKDWTASLKKVMKHVQYTTEQEESGRSDTDNSDTGEGIGSDDDAPKKKRNIADSSATPERAEHRVNLTAILQFSNASPFRDKTARGFSCLYCRKHFPNIRELRAHTAPQSEKDKLNSMLDYSLSNNPIKLDITDLACTVCHQPMTDLNQLKDHLVSFHDKTIYKNIKDIILPFRLDDGHNFTCVICSVIHVSFKNLYHHMSSHYTNYCCSSCGLGYITIAALRKHIKTHERGNFPCAYCHKKYSSLTKKNNHEKGAHKDGWLRNKCPHCPEIFVNYYDRSEHLAKVHNETPIQYPCNACNKVYKKKFELNRHIKHRHLRHRSFCCDKCSAEFFSKRGLDSHMRKHSVGGVHNDVLASTFSKASTLKDHVRKHETGKKTPLYTFECEICKKTFVQERSLKTHMRLHLDYLKGDGKHLRDERPVDHMSKPSGGEVPTCSICSKTFTRARTLKDHMRTHDDRRFQCEVCQRTFVQKRSLKNHMRLHLDHLKDDGKHLRDERPVDHMSKPSGGEVPTCSICSKTFTRARTLKDHMRTHDDRRFQCEVCQRTFVQKRSLKNHMRLHLDHLEDDGKHLRDERPVDHMSKPSGGEVPTCSICAKTFTRARTLKDHMRTHDDRKFQCEVCQRTFVQKRSLRNHMSSHQDYLEDNVKHLIDDKTLNVIAAENEKAEEEIREQCT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -